Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0422 ATGTCCCGATCGCTGGTGCAGCCGATCGGGCAGAAGAGGCTGACCAACGTTGCGGTGGTTCGTTTGAAGAAACACGGTCTTCGTTTCGAGATTGCCTGTTACAAGAACAAGGTCCTTTCTTGGCGCTCTGGCGTGGAAAAGGATTTGGATGAGGTCTTGCAATCACAAATTGTTTATTCGAATGTTTCGAAAGGAGTTCTTGCAAAAACAAAAGATTTAAAAGCAGCTTTTGGTACAGATGATCAGATGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAATTGCAGGGAAGGAGAGGGAGGCTCAATTATCTAATCAGTTTCGTGATATCGCAACCATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAGCGACTCCTGCGTGAAATTCATTTTGCTGTTGATCCAAACCACAGCTCAAAGAAACAGGCACTAGAGGTCATTCATGAGCTCCAGAAACAGTTCCCAATTAAACGTTCGCCTATGAGAATACGATATGTTGTACCTGAACAGAACTCCCCATCTCTCCTTGATAAGTTAAATGCTTGGAGTGCTAGTATCATTTCCAATGATCAGTCTGGAAATCAGCAACGAAGCATTATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGTAATCCATTAATGAGTGAACTACAAGGCAGATTTGAAGTTCTCTCTTTTTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATATGACGACGATTATGAGAATATGGAACTGCCACCAAGGCAAGTAAAGGAATCGGAATCGGCTATTCCCCAGCTAAGTGAAGCTTTACAAAAGCAGACAATCTCTGTCAATGGCGAGAATGCCCCGAAGGAAGGAAAACGCTGCAGCACATGCAACGTAGTTGTGGGGGATGCTACTCAGTTTAGAGAGCATCACAAGAGTGAATGGCACAAGCATAATGTCAAGCGCAAAACCAAGAATCTTCCACCTTTGACTGAAGAAGAGTGCACGGTAGAATTGGCAATGGGCGAGTCGGAGTCCGACCTGAAGGAGTATTCATTTTGA 1080 43.52 MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVVPEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDYENMELPPRQVKESESAIPQLSEALQKQTISVNGENAPKEGKRCSTCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGESESDLKEYSF 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9889062 9892161 - CcPI632755_08g004220.1 Cco08g0422 184896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0422 359 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Cco08g0422 359 Gene3D - 1 96 IPR036786 -
Cco08g0422 359 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Cco08g0422 359 FunFam SBDS, ribosome maturation factor 3 96 - -
Cco08g0422 359 FunFam SBDS, ribosome maturation factor 100 172 - -
Cco08g0422 359 Pfam SBDS protein, C-terminal domain 174 239 IPR046928 -
Cco08g0422 359 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 248 IPR039100 -
Cco08g0422 359 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Cco08g0422 359 SUPERFAMILY beta-beta-alpha zinc fingers 288 329 IPR036236 -
Cco08g0422 359 Gene3D - 100 172 IPR037188 -
Cco08g0422 359 NCBIfam ribosome assembly factor SBDS 13 231 IPR002140 GO:0042256(InterPro)
Cco08g0422 359 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254(InterPro)
Cco08g0422 359 ProSitePatterns Zinc finger C2H2 type domain signature. 300 322 IPR013087 -
Cco08g0422 359 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Cco08g0422 359 Gene3D - 174 251 - -
Cco08g0422 359 SMART ZnF_U1_5 295 329 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0422 K14574 - csv:101215380 682.559