Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0447 ATGTCGTTTCGTAGTATAGTTCGTGACGTTAGAGAGGGGTTTGGAAGTTTATCCCGACGTAGTTTTGAGGTGAGACTGCCCGGTCACCAGCGGGGTAAATCTCATGGATCAGTCCATGATTTGCACGACCAACCTCTGGTAATTCAGAATAGTCGTTGGGCTAGCCTCCCGCCTGAGCTATTGCGGGATGTAGTCATGAGACTGGAGAAGAGTGAGAGTGTGTGGCCTGCTCGCAAACATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCGTGGAGGGAAATGTGCAGAGAGATAGTAAAAAGTCCCGAGTTCTCTGGAAAAATCACCTTCCCTGTCTCTTTAAAACAGCCAGGGACTCGTGATGGAACCATTCAATGCTTCATTAAGAGGGACAAATCTAATTTGACTTATCACCTTTACCTTTGCCTTAGTCCTGCTTTACTTGTTGATAATGGGAAGTTTCTTCTTTCTGCCAAAAGAACGAGGAGAACGACCTGCACCGAATACGTGATCTCCATGGATGCAGATAATATATCAAGATCGAGCAATACCTACATTGGAAAACTACGGTCAAATTTTCTTGGGACCAAGTTCATTATCTATGATACACAACCTCCATACAACAATGCCCAGATTTCCCCACCGGGCCGTAGCCGTAGATACTCGAAGAAAGTTTCCCCAAAAGTCCCAACTGGTAGCTATGAGATTGCTCAAGTCACTTACGAACTGAACGTTCTTGGTACAAGAGGCCCTCGAAAGATGCACTGCACGATGCACTCTATCCCTGCCTCATCTCTTGAGGCCGGTGGTACTGTTCCAGGCCAGCCCGAGGTTGTCCCTCGACTCCTTGGGGATTCATTTCGAAGTATATCATTCTCCAAGTCTGTCTTCAATTCTACAGAGTTCAGTAGTTCCCGTTTCTCTGACATTGTTGGCTCTCAAGACGAAGATCAAATGGGGAAGGAGAGACCATTGATTCTTAGGAACAAGCCACCGCGGTGGCATGAGCAGTTGCAGTGTTGGTGCCTTAATTTCCGGGGGCGAGTAACCATTGCTTCTGTCAAGAACTTTCAACTGATAGCTGCTACAGAGCCATCTTCTTCCACAGCTACAAACCAATCACAGCCAAACCAACACGCCCAATCTTCCCAATCTGACCATGACAAGATCATTCTTCAATTTGGGAAGGTCGGGAAGGACATGTTTACGATGGATTACCGATATCCATTGTCAGCATTTCAAGCCTTTGCAATCTGTTTGAGTAGCTTTGACACCAAATTGGCTTGTGAATAA 1293 46.25 MSFRSIVRDVREGFGSLSRRSFEVRLPGHQRGKSHGSVHDLHDQPLVIQNSRWASLPPELLRDVVMRLEKSESVWPARKHVVACAAVCRSWREMCREIVKSPEFSGKITFPVSLKQPGTRDGTIQCFIKRDKSNLTYHLYLCLSPALLVDNGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGRSRRYSKKVSPKVPTGSYEIAQVTYELNVLGTRGPRKMHCTMHSIPASSLEAGGTVPGQPEVVPRLLGDSFRSISFSKSVFNSTEFSSSRFSDIVGSQDEDQMGKERPLILRNKPPRWHEQLQCWCLNFRGRVTIASVKNFQLIAATEPSSSTATNQSQPNQHAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10908332 10910943 - CcPI632755_08g004470.1 Cco08g0447 184921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0447 430 CDD F-box_AtTLP-like 53 97 - -
Cco08g0447 430 PRINTS Tubby superfamily signature 408 430 IPR000007 -
Cco08g0447 430 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Cco08g0447 430 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Cco08g0447 430 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cco08g0447 430 PRINTS Tubby superfamily signature 387 406 IPR000007 -
Cco08g0447 430 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cco08g0447 430 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Cco08g0447 430 MobiDBLite consensus disorder prediction 366 386 - -
Cco08g0447 430 Gene3D - 48 101 - -
Cco08g0447 430 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515(InterPro)
Cco08g0447 430 SUPERFAMILY Tubby C-terminal domain-like 102 430 IPR025659 -
Cco08g0447 430 Pfam Tub family 114 425 IPR000007 -
Cco08g0447 430 PANTHER TUBBY-RELATED 48 429 - -
Cco08g0447 430 FunFam Tubby-like F-box protein 110 430 - -
Cco08g0447 430 FunFam Tubby-like F-box protein 48 101 - -
Cco08g0447 430 Gene3D Tubby Protein; Chain A 112 424 IPR025659 -
Cco08g0447 430 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Cco08g0447 430 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
Cco08g0447 430 ProSitePatterns Tub family signature 2. 415 430 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1156 Cco-Chr5:10642680 Cco08g0447 Cco-Chr8:10908332 2.80E-189 dispersed
Cco05g2127 Cco-Chr5:30253926 Cco08g0447 Cco-Chr8:10908332 8.00E-117 dispersed
Cco06g0552 Cco-Chr6:5948576 Cco08g0447 Cco-Chr8:10908332 2.10E-108 dispersed
Cco07g0911 Cco-Chr7:21060072 Cco08g0447 Cco-Chr8:10908332 2.70E-39 dispersed
Cco08g0447 Cco-Chr8:10908332 Cco08g0837 Cco-Chr8:20209781 1.80E-196 dispersed
Cco08g0447 Cco-Chr8:10908332 Cco05g0677 Cco-Chr5:5583842 3.60E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59740 PF01167 Tub 6.80E-118 CL0395 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0447 K19600 - csv:101206041 840.876