Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g0454 | ATGCTTGGGGACTCCACTACTTCCGTCTTGGGCGGCGGCGCAGGAGGAGGAGAGGCCGCCTTGCCGGAGACGACTCATCATCACGATGGACTGATGGGGGACATGGAGGAGAATAATAACAATTCTGGTGAGGATGAGAGAGGGAGAAGCGGAGGTGGCGGCGGAGACGACGGTGACCGGAGCTTCGGCGGAAACCGGTGGCCGAGACAAGAAACTTTAGCTCTCTTGAAAATACGGTCAGAAATGGACGTGGCTTTTCGAGATGCAAGCGTTAAAGGCCCTTTGTGGGAACAAATTTCCAGGAAATTGGGGGAGCTTGGGTATCATCGAAGTGCAAAAAAATGCAAGGAGAAATTTGAGAATGTTTACAAATATCACAAAAGAACTAAAGAAGTTAGAAGTGGGAAACCAGATAGCAAAACTTATAAGTTCTTTGAACAATTAGAAGCTCTTGAGAATCACCCTCCTCTTAATTTCCACTCCCATTTGTCTAAACCAACTCCTCCGCCACAGCCGCCACCGCCTACCGCCGTCATTTCCCCCATTCCTTCAAGTACTGTTCCATCCACCACTCTACCTCACTTGATGAACATATCATTCTCTCAACCAAACCCCACAATTCATCTCCCATCTCCTCCGCCCCCTCCTGCTCCGTTGCCATTGAATAACCCTACAAGTTTACCCACCACCGTCCCTCCCTCCCTGCCGTTTCAAATCAATGTCTCTTCAGCGGGAGTGGGGTTTCAGAGCATTGAAGCGGATCTCATCTCGAACTCGACGTCTGATGATATCAATTCGTCAACGTCATCAGATGAGGCGTCGAGAAAGAGGAGGAGGAAGAGGAAATGGAAGGACTTTTTTGAGAGATTGATGAAGGAAGTGATTCAAAAGCAAGAGGAAATGCAAAAGAGATTCTTGGAAGCAATTGAGAAGAGGGAGCAAGAGAGAGTTGTGAGAGAAGAAGCTTGGAGGATGCAAGAGATGGCCAAAATCAATAGAGAAAGAGAGATTTTAGCTCAAGAAAGATCAATGGCGGCTGCAAAAGATGCTGCGATTACATCGTTCCTTCAAAAAATAACTGAATCCCAACACAACAATAACAACAACAACGCATCACAACCGTCACCACCGCCACCGCCACCGCCATCGTCCCAACAACAACAACAACCAATTCCAACGTCAAATCCAACACCAGTCGTGCAACCTTCACCGCGACCGCCACCTCCGGCCGCACCACAAGCTTCCACATTGCAAGTTGTTGTTCCCAATTCCACCCCACAAAAAGTGGGGAACAATAATGAATTGTTGCAAATGGAAATCATGAAAATGGATCATAATGGTGGGGAGAATTATAGCATTAGCCCAGCTTCAAGCTCATCAAGATGGCCAAAAGTGGAAGTTCAAGCACTTATCAAATTGAGAACAAACCTTGAAACCAAATATCAAGAGAATGGGCCAAAAGGGCCTTTATGGGAAGAGATATCATCAGCCATGAAGAAACTTGGGTACAACAGAAATGCAAAGAGGTGCAAAGAGAAGTGGGAAAACATAAACAAATACTTCAAGAAAGTGAAGGAAAGTAGAAAAGCAAGGCCTGAAGATTCCAAGACTTGCCCTTATTTTCACCAGCTTGATGCTTTGTATAGGGAGAAGAGCAACAACACAAACAACAACATAATCGGATCCTCGACGCAAATTATGCAGCATCAACAGCAGCCATTGATGGTTCGCCCCGAGCAACAATGGCCTCCCCAACAAGAGATCACCCGCCCCGACTCAGGAAACGAAGAGATGGAGAGTGAACCAATGGATCGTGATGATAAAGACGACGATGACGAAGATGAAGAGGAAGAGGACGAAGGTGGAGGGAACTATGAGATTGTGGCAAGCAAACCGGCTTCAGTGAGTGCTGCAGAGTGA | 1920 | 46.88 | MLGDSTTSVLGGGAGGGEAALPETTHHHDGLMGDMEENNNNSGEDERGRSGGGGGDDGDRSFGGNRWPRQETLALLKIRSEMDVAFRDASVKGPLWEQISRKLGELGYHRSAKKCKEKFENVYKYHKRTKEVRSGKPDSKTYKFFEQLEALENHPPLNFHSHLSKPTPPPQPPPPTAVISPIPSSTVPSTTLPHLMNISFSQPNPTIHLPSPPPPPAPLPLNNPTSLPTTVPPSLPFQINVSSAGVGFQSIEADLISNSTSDDINSSTSSDEASRKRRRKRKWKDFFERLMKEVIQKQEEMQKRFLEAIEKREQERVVREEAWRMQEMAKINREREILAQERSMAAAKDAAITSFLQKITESQHNNNNNNASQPSPPPPPPPSSQQQQQPIPTSNPTPVVQPSPRPPPPAAPQASTLQVVVPNSTPQKVGNNNELLQMEIMKMDHNGGENYSISPASSSSRWPKVEVQALIKLRTNLETKYQENGPKGPLWEEISSAMKKLGYNRNAKRCKEKWENINKYFKKVKESRKARPEDSKTCPYFHQLDALYREKSNNTNNNIIGSSTQIMQHQQQPLMVRPEQQWPPQQEITRPDSGNEEMESEPMDRDDKDDDDEDEEEEDEGGGNYEIVASKPASVSAAE | 639 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 11275473 | 11278057 | + | CcPI632755_08g004540.1 | Cco08g0454 | 184928 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g0454 | 639 | ProSiteProfiles | Myb-like domain profile. | 65 | 123 | IPR001005 | - | |
Cco08g0454 | 639 | MobiDBLite | consensus disorder prediction | 599 | 623 | - | - | |
Cco08g0454 | 639 | MobiDBLite | consensus disorder prediction | 566 | 639 | - | - | |
Cco08g0454 | 639 | Coils | Coil | 284 | 315 | - | - | |
Cco08g0454 | 639 | MobiDBLite | consensus disorder prediction | 395 | 413 | - | - | |
Cco08g0454 | 639 | ProSiteProfiles | Myb-like domain profile. | 454 | 518 | IPR001005 | - | |
Cco08g0454 | 639 | MobiDBLite | consensus disorder prediction | 206 | 230 | - | - | |
Cco08g0454 | 639 | FunFam | Trihelix transcription factor GT-2 | 67 | 128 | - | - | |
Cco08g0454 | 639 | FunFam | Trihelix transcription factor GT-2 | 462 | 523 | - | - | |
Cco08g0454 | 639 | MobiDBLite | consensus disorder prediction | 162 | 181 | - | - | |
Cco08g0454 | 639 | MobiDBLite | consensus disorder prediction | 363 | 416 | - | - | |
Cco08g0454 | 639 | MobiDBLite | consensus disorder prediction | 566 | 591 | - | - | |
Cco08g0454 | 639 | MobiDBLite | consensus disorder prediction | 156 | 230 | - | - | |
Cco08g0454 | 639 | MobiDBLite | consensus disorder prediction | 259 | 280 | - | - | |
Cco08g0454 | 639 | Pfam | Myb/SANT-like DNA-binding domain | 65 | 151 | IPR044822 | - | |
Cco08g0454 | 639 | Pfam | Myb/SANT-like DNA-binding domain | 460 | 547 | IPR044822 | - | |
Cco08g0454 | 639 | PANTHER | FI21293P1 | 38 | 609 | - | - | |
Cco08g0454 | 639 | MobiDBLite | consensus disorder prediction | 22 | 54 | - | - | |
Cco08g0454 | 639 | SMART | sant | 63 | 125 | IPR001005 | - | |
Cco08g0454 | 639 | SMART | sant | 458 | 520 | IPR001005 | - | |
Cco08g0454 | 639 | CDD | GT1 | 65 | 130 | - | - | |
Cco08g0454 | 639 | MobiDBLite | consensus disorder prediction | 1 | 67 | - | - | |
Cco08g0454 | 639 | CDD | GT1 | 461 | 525 | - | - | |
Cco08g0454 | 639 | Gene3D | - | 67 | 128 | - | - | |
Cco08g0454 | 639 | Gene3D | - | 462 | 523 | - | - | |
Cco08g0454 | 639 | MobiDBLite | consensus disorder prediction | 372 | 387 | - | - | |
Cco08g0454 | 639 | MobiDBLite | consensus disorder prediction | 182 | 205 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0119 | Cco-Chr1:1002593 | Cco08g0454 | Cco-Chr8:11275473 | 3.20E-94 | dispersed | |
Cco01g1156 | Cco-Chr1:17027405 | Cco08g0454 | Cco-Chr8:11275473 | 4.30E-27 | dispersed | |
Cco02g0069 | Cco-Chr2:731057 | Cco08g0454 | Cco-Chr8:11275473 | 4.70E-87 | dispersed | |
Cco06g1051 | Cco-Chr6:15161670 | Cco08g0454 | Cco-Chr8:11275473 | 8.50E-38 | dispersed | |
Cco08g0454 | Cco-Chr8:11275473 | Cco10g1917 | Cco-Chr10:32784669 | 1.20E-34 | dispersed | |
Cco08g0454 | Cco-Chr8:11275473 | Cco08g0457 | Cco-Chr8:11466074 | 1.50E-90 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59741 | PF13837 | Myb_DNA-bind_4 | 2.90E-21 | CL0123 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g0454 | - | - | - | 0.0 |