Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0454 ATGCTTGGGGACTCCACTACTTCCGTCTTGGGCGGCGGCGCAGGAGGAGGAGAGGCCGCCTTGCCGGAGACGACTCATCATCACGATGGACTGATGGGGGACATGGAGGAGAATAATAACAATTCTGGTGAGGATGAGAGAGGGAGAAGCGGAGGTGGCGGCGGAGACGACGGTGACCGGAGCTTCGGCGGAAACCGGTGGCCGAGACAAGAAACTTTAGCTCTCTTGAAAATACGGTCAGAAATGGACGTGGCTTTTCGAGATGCAAGCGTTAAAGGCCCTTTGTGGGAACAAATTTCCAGGAAATTGGGGGAGCTTGGGTATCATCGAAGTGCAAAAAAATGCAAGGAGAAATTTGAGAATGTTTACAAATATCACAAAAGAACTAAAGAAGTTAGAAGTGGGAAACCAGATAGCAAAACTTATAAGTTCTTTGAACAATTAGAAGCTCTTGAGAATCACCCTCCTCTTAATTTCCACTCCCATTTGTCTAAACCAACTCCTCCGCCACAGCCGCCACCGCCTACCGCCGTCATTTCCCCCATTCCTTCAAGTACTGTTCCATCCACCACTCTACCTCACTTGATGAACATATCATTCTCTCAACCAAACCCCACAATTCATCTCCCATCTCCTCCGCCCCCTCCTGCTCCGTTGCCATTGAATAACCCTACAAGTTTACCCACCACCGTCCCTCCCTCCCTGCCGTTTCAAATCAATGTCTCTTCAGCGGGAGTGGGGTTTCAGAGCATTGAAGCGGATCTCATCTCGAACTCGACGTCTGATGATATCAATTCGTCAACGTCATCAGATGAGGCGTCGAGAAAGAGGAGGAGGAAGAGGAAATGGAAGGACTTTTTTGAGAGATTGATGAAGGAAGTGATTCAAAAGCAAGAGGAAATGCAAAAGAGATTCTTGGAAGCAATTGAGAAGAGGGAGCAAGAGAGAGTTGTGAGAGAAGAAGCTTGGAGGATGCAAGAGATGGCCAAAATCAATAGAGAAAGAGAGATTTTAGCTCAAGAAAGATCAATGGCGGCTGCAAAAGATGCTGCGATTACATCGTTCCTTCAAAAAATAACTGAATCCCAACACAACAATAACAACAACAACGCATCACAACCGTCACCACCGCCACCGCCACCGCCATCGTCCCAACAACAACAACAACCAATTCCAACGTCAAATCCAACACCAGTCGTGCAACCTTCACCGCGACCGCCACCTCCGGCCGCACCACAAGCTTCCACATTGCAAGTTGTTGTTCCCAATTCCACCCCACAAAAAGTGGGGAACAATAATGAATTGTTGCAAATGGAAATCATGAAAATGGATCATAATGGTGGGGAGAATTATAGCATTAGCCCAGCTTCAAGCTCATCAAGATGGCCAAAAGTGGAAGTTCAAGCACTTATCAAATTGAGAACAAACCTTGAAACCAAATATCAAGAGAATGGGCCAAAAGGGCCTTTATGGGAAGAGATATCATCAGCCATGAAGAAACTTGGGTACAACAGAAATGCAAAGAGGTGCAAAGAGAAGTGGGAAAACATAAACAAATACTTCAAGAAAGTGAAGGAAAGTAGAAAAGCAAGGCCTGAAGATTCCAAGACTTGCCCTTATTTTCACCAGCTTGATGCTTTGTATAGGGAGAAGAGCAACAACACAAACAACAACATAATCGGATCCTCGACGCAAATTATGCAGCATCAACAGCAGCCATTGATGGTTCGCCCCGAGCAACAATGGCCTCCCCAACAAGAGATCACCCGCCCCGACTCAGGAAACGAAGAGATGGAGAGTGAACCAATGGATCGTGATGATAAAGACGACGATGACGAAGATGAAGAGGAAGAGGACGAAGGTGGAGGGAACTATGAGATTGTGGCAAGCAAACCGGCTTCAGTGAGTGCTGCAGAGTGA 1920 46.88 MLGDSTTSVLGGGAGGGEAALPETTHHHDGLMGDMEENNNNSGEDERGRSGGGGGDDGDRSFGGNRWPRQETLALLKIRSEMDVAFRDASVKGPLWEQISRKLGELGYHRSAKKCKEKFENVYKYHKRTKEVRSGKPDSKTYKFFEQLEALENHPPLNFHSHLSKPTPPPQPPPPTAVISPIPSSTVPSTTLPHLMNISFSQPNPTIHLPSPPPPPAPLPLNNPTSLPTTVPPSLPFQINVSSAGVGFQSIEADLISNSTSDDINSSTSSDEASRKRRRKRKWKDFFERLMKEVIQKQEEMQKRFLEAIEKREQERVVREEAWRMQEMAKINREREILAQERSMAAAKDAAITSFLQKITESQHNNNNNNASQPSPPPPPPPSSQQQQQPIPTSNPTPVVQPSPRPPPPAAPQASTLQVVVPNSTPQKVGNNNELLQMEIMKMDHNGGENYSISPASSSSRWPKVEVQALIKLRTNLETKYQENGPKGPLWEEISSAMKKLGYNRNAKRCKEKWENINKYFKKVKESRKARPEDSKTCPYFHQLDALYREKSNNTNNNIIGSSTQIMQHQQQPLMVRPEQQWPPQQEITRPDSGNEEMESEPMDRDDKDDDDEDEEEEDEGGGNYEIVASKPASVSAAE 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11275473 11278057 + CcPI632755_08g004540.1 Cco08g0454 184928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0454 639 ProSiteProfiles Myb-like domain profile. 65 123 IPR001005 -
Cco08g0454 639 MobiDBLite consensus disorder prediction 599 623 - -
Cco08g0454 639 MobiDBLite consensus disorder prediction 566 639 - -
Cco08g0454 639 Coils Coil 284 315 - -
Cco08g0454 639 MobiDBLite consensus disorder prediction 395 413 - -
Cco08g0454 639 ProSiteProfiles Myb-like domain profile. 454 518 IPR001005 -
Cco08g0454 639 MobiDBLite consensus disorder prediction 206 230 - -
Cco08g0454 639 FunFam Trihelix transcription factor GT-2 67 128 - -
Cco08g0454 639 FunFam Trihelix transcription factor GT-2 462 523 - -
Cco08g0454 639 MobiDBLite consensus disorder prediction 162 181 - -
Cco08g0454 639 MobiDBLite consensus disorder prediction 363 416 - -
Cco08g0454 639 MobiDBLite consensus disorder prediction 566 591 - -
Cco08g0454 639 MobiDBLite consensus disorder prediction 156 230 - -
Cco08g0454 639 MobiDBLite consensus disorder prediction 259 280 - -
Cco08g0454 639 Pfam Myb/SANT-like DNA-binding domain 65 151 IPR044822 -
Cco08g0454 639 Pfam Myb/SANT-like DNA-binding domain 460 547 IPR044822 -
Cco08g0454 639 PANTHER FI21293P1 38 609 - -
Cco08g0454 639 MobiDBLite consensus disorder prediction 22 54 - -
Cco08g0454 639 SMART sant 63 125 IPR001005 -
Cco08g0454 639 SMART sant 458 520 IPR001005 -
Cco08g0454 639 CDD GT1 65 130 - -
Cco08g0454 639 MobiDBLite consensus disorder prediction 1 67 - -
Cco08g0454 639 CDD GT1 461 525 - -
Cco08g0454 639 Gene3D - 67 128 - -
Cco08g0454 639 Gene3D - 462 523 - -
Cco08g0454 639 MobiDBLite consensus disorder prediction 372 387 - -
Cco08g0454 639 MobiDBLite consensus disorder prediction 182 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0119 Cco-Chr1:1002593 Cco08g0454 Cco-Chr8:11275473 3.20E-94 dispersed
Cco01g1156 Cco-Chr1:17027405 Cco08g0454 Cco-Chr8:11275473 4.30E-27 dispersed
Cco02g0069 Cco-Chr2:731057 Cco08g0454 Cco-Chr8:11275473 4.70E-87 dispersed
Cco06g1051 Cco-Chr6:15161670 Cco08g0454 Cco-Chr8:11275473 8.50E-38 dispersed
Cco08g0454 Cco-Chr8:11275473 Cco10g1917 Cco-Chr10:32784669 1.20E-34 dispersed
Cco08g0454 Cco-Chr8:11275473 Cco08g0457 Cco-Chr8:11466074 1.50E-90 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59741 PF13837 Myb_DNA-bind_4 2.90E-21 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0454 - - - 0.0