Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0457 ATGGATGTCGACTCTGGCGAGGCAGTGGTGACAGAGGCGGGGGAAGCTCATGAAGTTGGCAACTGTGACGGCCGTGGCGGCGGCGGCGGAAACGGATCGAATTCCGGCGAAGAAGATAAAGGGTCATCTTTGTTGTTGTTTGAAGATGGTGAGAAGAATTCTGGTGGGAACAGGTGGCCAAGACAAGAGACTTTGGCTTTGTTGAAGATAAGATCTGATATGGATGCAATTTTTAGAGATGCAACTCATAAAGCTCCATTGTGGGATGAAGTTTCAAGGAAATTAGGAGAGCTTGGATTCAATCGAACTCCAAAGAAATGCAAGGAGAAATTTGAGAATGTTTATAAGTATCACAAGAGAACCAAAGATGTTCGAAGTGGGAAATCCGATAATAGCAAAAAAGTTTATAGATTTTCAGATGAATTGGAGGCTTTTGATCACCATAATAGCCATCACCAAAATCACATTTTATTCCAATCTCACCACCACCAGCCGCCGCAGCTGCCACCACTGCCGCCAGTTCCTCCGACGACGACAACAACACCGCCTCCAGTGATGAAAACAGTCAACTCTACTGTTTCATCCACCATGAACACTACAACAAACAACAACTCTTTGCCACCAAAGTCTTCTAATAACCCTCTTTCCAATTTGCCAAACATGGCTGCCAATGTGATGTTTTCGAGCTCCACTTCATCGTCAACGGCGTCGGAGGAAGATCCATTTCGGAGTAGCAGGAGGAGGAGGAAGAAGAGGAAGTGGAGTGATTTCTTCTTGAGATTAACAAAGGAGGTAATAGAGAAGCAAGAAGGGCTTCAATTAAAGTTCCTAGAAGCCTTGGAGAGAATAGAGAATCGAAGGAAATTGAGAGATGAAGCATGGAGAATGAAAGAAATGAAAAGGGTTAATCAAGAACATGAAGTTTTAGTTCAAGAGATGTCCATGGCCGCTGCGAAAGATGCAGCCGTCGTCGCATTTTTGCAAAAGATAGCTCCATCTTCGGCTCCGCCACCGCCACCTCCACCGCCACCGCCACCAATGACAACTCAGTCGCAAAACAACGAGAATAACGGAAAGATGACGTCCGTAACGACAAATGGAAAGGTGAGTAGCATTGGAGGAAGCCCTTCAAGATGGCCAAAAGGTGAAGTTGAAGCATTGATAAGACTAAGGACAGAAATGGAAATGAAATATCAAGAGAATGGGCCAAAAGGATTATTATGGGAGGAGATTTCAGCAGCAATGAGAGGGCTTGGATACAATAGAAGCTCAAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAATACTTCAAAAAGGTGAAAGATAGCAACAAGAAGAGAGCAGAAGATTCCAAGACATGTCCTTACTTTCACCAATTAGATGCTCTTTATAGAGAGAAAGAAAAAAATATGAATAATTTTGATATCAATAGCCAAATGGAGCCATTGATGGTTGAACCAGAACAACAATGGCCACCTCCATTTCAAGCCAATAATCAAATCATGGGAAGTTTACAAAGAATAAATGATGAAGGAAATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGAGGAAGTAGTAGCACAGATGTGGAAGATTGA 1626 42.62 MDVDSGEAVVTEAGEAHEVGNCDGRGGGGGNGSNSGEEDKGSSLLLFEDGEKNSGGNRWPRQETLALLKIRSDMDAIFRDATHKAPLWDEVSRKLGELGFNRTPKKCKEKFENVYKYHKRTKDVRSGKSDNSKKVYRFSDELEAFDHHNSHHQNHILFQSHHHQPPQLPPLPPVPPTTTTTPPPVMKTVNSTVSSTMNTTTNNNSLPPKSSNNPLSNLPNMAANVMFSSSTSSSTASEEDPFRSSRRRRKKRKWSDFFLRLTKEVIEKQEGLQLKFLEALERIENRRKLRDEAWRMKEMKRVNQEHEVLVQEMSMAAAKDAAVVAFLQKIAPSSAPPPPPPPPPPPMTTQSQNNENNGKMTSVTTNGKVSSIGGSPSRWPKGEVEALIRLRTEMEMKYQENGPKGLLWEEISAAMRGLGYNRSSKRCKEKWENINKYFKKVKDSNKKRAEDSKTCPYFHQLDALYREKEKNMNNFDINSQMEPLMVEPEQQWPPPFQANNQIMGSLQRINDEGNQEEEEEEEEEEEEEEEDGGSSSTDVED 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11466074 11468298 - CcPI632755_08g004570.1 Cco08g0457 184931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0457 541 FunFam Trihelix transcription factor GT-2 379 440 - -
Cco08g0457 541 MobiDBLite consensus disorder prediction 513 541 - -
Cco08g0457 541 ProSiteProfiles Myb-like domain profile. 51 115 IPR001005 -
Cco08g0457 541 MobiDBLite consensus disorder prediction 160 181 - -
Cco08g0457 541 ProSiteProfiles Myb-like domain profile. 377 435 IPR001005 -
Cco08g0457 541 MobiDBLite consensus disorder prediction 194 251 - -
Cco08g0457 541 MobiDBLite consensus disorder prediction 331 378 - -
Cco08g0457 541 SUPERFAMILY Formin homology 2 domain (FH2 domain) 336 447 - -
Cco08g0457 541 Coils Coil 503 530 - -
Cco08g0457 541 MobiDBLite consensus disorder prediction 489 541 - -
Cco08g0457 541 PANTHER FI21293P1 32 520 - -
Cco08g0457 541 MobiDBLite consensus disorder prediction 165 181 - -
Cco08g0457 541 CDD GT1 377 442 - -
Cco08g0457 541 Gene3D - 379 440 - -
Cco08g0457 541 Gene3D - 59 120 - -
Cco08g0457 541 MobiDBLite consensus disorder prediction 332 349 - -
Cco08g0457 541 MobiDBLite consensus disorder prediction 493 510 - -
Cco08g0457 541 MobiDBLite consensus disorder prediction 1 59 - -
Cco08g0457 541 MobiDBLite consensus disorder prediction 350 373 - -
Cco08g0457 541 Pfam Myb/SANT-like DNA-binding domain 57 137 IPR044822 -
Cco08g0457 541 Pfam Myb/SANT-like DNA-binding domain 377 464 IPR044822 -
Cco08g0457 541 MobiDBLite consensus disorder prediction 194 239 - -
Cco08g0457 541 FunFam Trihelix transcription factor GT-2 59 120 - -
Cco08g0457 541 SMART sant 55 117 IPR001005 -
Cco08g0457 541 SMART sant 375 437 IPR001005 -
Cco08g0457 541 CDD GT1 57 122 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0457 Cco-Chr8:11466074 Cco10g1917 Cco-Chr10:32784669 3.70E-21 dispersed
Cco08g0454 Cco-Chr8:11275473 Cco08g0457 Cco-Chr8:11466074 1.50E-90 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59742 PF13837 Myb_DNA-bind_4 4.00E-22 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0457 - - - 0.0