Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g0457 | ATGGATGTCGACTCTGGCGAGGCAGTGGTGACAGAGGCGGGGGAAGCTCATGAAGTTGGCAACTGTGACGGCCGTGGCGGCGGCGGCGGAAACGGATCGAATTCCGGCGAAGAAGATAAAGGGTCATCTTTGTTGTTGTTTGAAGATGGTGAGAAGAATTCTGGTGGGAACAGGTGGCCAAGACAAGAGACTTTGGCTTTGTTGAAGATAAGATCTGATATGGATGCAATTTTTAGAGATGCAACTCATAAAGCTCCATTGTGGGATGAAGTTTCAAGGAAATTAGGAGAGCTTGGATTCAATCGAACTCCAAAGAAATGCAAGGAGAAATTTGAGAATGTTTATAAGTATCACAAGAGAACCAAAGATGTTCGAAGTGGGAAATCCGATAATAGCAAAAAAGTTTATAGATTTTCAGATGAATTGGAGGCTTTTGATCACCATAATAGCCATCACCAAAATCACATTTTATTCCAATCTCACCACCACCAGCCGCCGCAGCTGCCACCACTGCCGCCAGTTCCTCCGACGACGACAACAACACCGCCTCCAGTGATGAAAACAGTCAACTCTACTGTTTCATCCACCATGAACACTACAACAAACAACAACTCTTTGCCACCAAAGTCTTCTAATAACCCTCTTTCCAATTTGCCAAACATGGCTGCCAATGTGATGTTTTCGAGCTCCACTTCATCGTCAACGGCGTCGGAGGAAGATCCATTTCGGAGTAGCAGGAGGAGGAGGAAGAAGAGGAAGTGGAGTGATTTCTTCTTGAGATTAACAAAGGAGGTAATAGAGAAGCAAGAAGGGCTTCAATTAAAGTTCCTAGAAGCCTTGGAGAGAATAGAGAATCGAAGGAAATTGAGAGATGAAGCATGGAGAATGAAAGAAATGAAAAGGGTTAATCAAGAACATGAAGTTTTAGTTCAAGAGATGTCCATGGCCGCTGCGAAAGATGCAGCCGTCGTCGCATTTTTGCAAAAGATAGCTCCATCTTCGGCTCCGCCACCGCCACCTCCACCGCCACCGCCACCAATGACAACTCAGTCGCAAAACAACGAGAATAACGGAAAGATGACGTCCGTAACGACAAATGGAAAGGTGAGTAGCATTGGAGGAAGCCCTTCAAGATGGCCAAAAGGTGAAGTTGAAGCATTGATAAGACTAAGGACAGAAATGGAAATGAAATATCAAGAGAATGGGCCAAAAGGATTATTATGGGAGGAGATTTCAGCAGCAATGAGAGGGCTTGGATACAATAGAAGCTCAAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAATACTTCAAAAAGGTGAAAGATAGCAACAAGAAGAGAGCAGAAGATTCCAAGACATGTCCTTACTTTCACCAATTAGATGCTCTTTATAGAGAGAAAGAAAAAAATATGAATAATTTTGATATCAATAGCCAAATGGAGCCATTGATGGTTGAACCAGAACAACAATGGCCACCTCCATTTCAAGCCAATAATCAAATCATGGGAAGTTTACAAAGAATAAATGATGAAGGAAATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGAGGAAGTAGTAGCACAGATGTGGAAGATTGA | 1626 | 42.62 | MDVDSGEAVVTEAGEAHEVGNCDGRGGGGGNGSNSGEEDKGSSLLLFEDGEKNSGGNRWPRQETLALLKIRSDMDAIFRDATHKAPLWDEVSRKLGELGFNRTPKKCKEKFENVYKYHKRTKDVRSGKSDNSKKVYRFSDELEAFDHHNSHHQNHILFQSHHHQPPQLPPLPPVPPTTTTTPPPVMKTVNSTVSSTMNTTTNNNSLPPKSSNNPLSNLPNMAANVMFSSSTSSSTASEEDPFRSSRRRRKKRKWSDFFLRLTKEVIEKQEGLQLKFLEALERIENRRKLRDEAWRMKEMKRVNQEHEVLVQEMSMAAAKDAAVVAFLQKIAPSSAPPPPPPPPPPPMTTQSQNNENNGKMTSVTTNGKVSSIGGSPSRWPKGEVEALIRLRTEMEMKYQENGPKGLLWEEISAAMRGLGYNRSSKRCKEKWENINKYFKKVKDSNKKRAEDSKTCPYFHQLDALYREKEKNMNNFDINSQMEPLMVEPEQQWPPPFQANNQIMGSLQRINDEGNQEEEEEEEEEEEEEEEDGGSSSTDVED | 541 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 11466074 | 11468298 | - | CcPI632755_08g004570.1 | Cco08g0457 | 184931 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g0457 | 541 | FunFam | Trihelix transcription factor GT-2 | 379 | 440 | - | - | |
Cco08g0457 | 541 | MobiDBLite | consensus disorder prediction | 513 | 541 | - | - | |
Cco08g0457 | 541 | ProSiteProfiles | Myb-like domain profile. | 51 | 115 | IPR001005 | - | |
Cco08g0457 | 541 | MobiDBLite | consensus disorder prediction | 160 | 181 | - | - | |
Cco08g0457 | 541 | ProSiteProfiles | Myb-like domain profile. | 377 | 435 | IPR001005 | - | |
Cco08g0457 | 541 | MobiDBLite | consensus disorder prediction | 194 | 251 | - | - | |
Cco08g0457 | 541 | MobiDBLite | consensus disorder prediction | 331 | 378 | - | - | |
Cco08g0457 | 541 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 336 | 447 | - | - | |
Cco08g0457 | 541 | Coils | Coil | 503 | 530 | - | - | |
Cco08g0457 | 541 | MobiDBLite | consensus disorder prediction | 489 | 541 | - | - | |
Cco08g0457 | 541 | PANTHER | FI21293P1 | 32 | 520 | - | - | |
Cco08g0457 | 541 | MobiDBLite | consensus disorder prediction | 165 | 181 | - | - | |
Cco08g0457 | 541 | CDD | GT1 | 377 | 442 | - | - | |
Cco08g0457 | 541 | Gene3D | - | 379 | 440 | - | - | |
Cco08g0457 | 541 | Gene3D | - | 59 | 120 | - | - | |
Cco08g0457 | 541 | MobiDBLite | consensus disorder prediction | 332 | 349 | - | - | |
Cco08g0457 | 541 | MobiDBLite | consensus disorder prediction | 493 | 510 | - | - | |
Cco08g0457 | 541 | MobiDBLite | consensus disorder prediction | 1 | 59 | - | - | |
Cco08g0457 | 541 | MobiDBLite | consensus disorder prediction | 350 | 373 | - | - | |
Cco08g0457 | 541 | Pfam | Myb/SANT-like DNA-binding domain | 57 | 137 | IPR044822 | - | |
Cco08g0457 | 541 | Pfam | Myb/SANT-like DNA-binding domain | 377 | 464 | IPR044822 | - | |
Cco08g0457 | 541 | MobiDBLite | consensus disorder prediction | 194 | 239 | - | - | |
Cco08g0457 | 541 | FunFam | Trihelix transcription factor GT-2 | 59 | 120 | - | - | |
Cco08g0457 | 541 | SMART | sant | 55 | 117 | IPR001005 | - | |
Cco08g0457 | 541 | SMART | sant | 375 | 437 | IPR001005 | - | |
Cco08g0457 | 541 | CDD | GT1 | 57 | 122 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco08g0457 | Cco-Chr8:11466074 | Cco10g1917 | Cco-Chr10:32784669 | 3.70E-21 | dispersed | |
Cco08g0454 | Cco-Chr8:11275473 | Cco08g0457 | Cco-Chr8:11466074 | 1.50E-90 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59742 | PF13837 | Myb_DNA-bind_4 | 4.00E-22 | CL0123 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g0457 | - | - | - | 0.0 |