Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0472 ATGATTAATTCATTATGGGTTTGTCGTGGTCCAGGGAACAAAGAGTGTTCAAACAATACTTGTTATGTAGCATATCACCCTCTTTGTGCACGAGCTGCTGGTCTTTGTGTAGAGCTTGAGGAAGATGACAGGCTCCATCTACTTGCTGCGGATGAAGATGAAGAAGATCAGTGTATTCGATTACTTTCCTTTTGCAAGAAACACAGGCCACCATCTAATGAGCGTTTAATGGCTGAGGATCGTATAGGGCAAGCTGGACAGCAGTGCTCTAATTATACTCCACCATGCAATCCATCTGGTTGTGCTCGTACAGTCATTTGGGCTGTAAAGTGGCTAATGGCACTTATATCCACGTTTTGGGAGGATGCTTGGGCTAGTGACACTCAGATTTTCTTGCCCTTTGATCCAAGAAAGGGGCTCAGAAGTCTTAATACAGCTGATGAACTTCAGAGGAAGGCCTTATGTAACCTTCTTGAGCCTTATAATTACTTTGGGAGAAGAGGGCGCAAAGCACCTGAAGCCGTTGCTGCTGCATCTTTGAAACGATTGTTTGTTGAAAATCAGCCTTATATAGCGAGCGGTTATTCCCAACATTTGTTATCAGGAAATTTATTGCCTTCCAGTGGAGTCCTAGGCATGAAATTTTCTCTTCAACATTTGAAAGCCTGTCAGCTTGATCCTCGAAACATACTTTCTGTGGCTGAAAAATACAAATTTATGAGGGAGACATTCAGGAAGAGACTTGCATTTGGGAAGTCTGGGATTCATGGATTTGGAATCTTTGCTAAGCATCCACATAGAGCAGGGGATATGGTAATCGAATACACTGGAGAAATTGTTAGACCTCCCATTGCTGACAGGAGGGAGCGGTTCATATATAATTTACTGGTGGGTGCTGGCACCTACATGTTTAGAATCGATGACGAACGAGTAATTGACGCTACAAGGGCTGGGAGCATTGCTCATCTGATCAACCACTCTTGTGAACCGAATTGCTACTCCAGAGTTATAAGTGTCAATGGAGATGAGCACATAATAATATTTGCAAAGAGGGACATTAAGCGATGGGAAGAACTTACATATGATTATAGGTTTTTTTCCATTGATGAACAACTAGCTTGCTATTGCGGGTATCCTAGATGTCGTGGTGTAGTCAATGATATGGAAGAAGAGGAACGAGTTTCAAAGCTACACGTATCTCGAACAGATTTAAACTATCATGTAAAGTTCGCCAATGGCAGCTCTCCTCCGGCAAACTTGACAATGACATTTGCCATTCTTGCGACGCGCACTGGAAGTTGGTATTCAAGTTCTGGATTCACAAGTTGTGCTTCTCGTTCTAGTGTCGCTACGAGCACATCCGTTTCTACGACTCAAATCCGAGAGCTTAAAGAAGTAAACCCAAGTGTAGCAATTTTGAGAAAGGATGAAGAAGTAGAGGAAGTGGAAATGGAGATTGGATATCCAACAGATGTGAAGCATGTGACACACATTGGATTGGATGGCTCTACAACTACAAACCCTAATATTAAGGGTAATCATTGGGAAAATCTCAATAACTTTGTTCCTTCTGAGTTTCTTAATTCTTTTCCTTCCATTTCTTTAAGGCAATTTGAACTTTCAATGGCTGCTCAAGCACAATCTTCTCTTCTAGCAACATGA 1662 42.0 MINSLWVCRGPGNKECSNNTCYVAYHPLCARAAGLCVELEEDDRLHLLAADEDEEDQCIRLLSFCKKHRPPSNERLMAEDRIGQAGQQCSNYTPPCNPSGCARTVIWAVKWLMALISTFWEDAWASDTQIFLPFDPRKGLRSLNTADELQRKALCNLLEPYNYFGRRGRKAPEAVAAASLKRLFVENQPYIASGYSQHLLSGNLLPSSGVLGMKFSLQHLKACQLDPRNILSVAEKYKFMRETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGEIVRPPIADRRERFIYNLLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKRWEELTYDYRFFSIDEQLACYCGYPRCRGVVNDMEEEERVSKLHVSRTDLNYHVKFANGSSPPANLTMTFAILATRTGSWYSSSGFTSCASRSSVATSTSVSTTQIRELKEVNPSVAILRKDEEVEEVEMEIGYPTDVKHVTHIGLDGSTTTNPNIKGNHWENLNNFVPSEFLNSFPSISLRQFELSMAAQAQSSLLAT 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11994149 12008256 - CcPI632755_08g004720.1 Cco08g0472 184946

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0472 553 Gene3D SET domain 219 402 IPR046341 -
Cco08g0472 553 Pfam SET domain 257 363 IPR001214 GO:0005515(InterPro)
Cco08g0472 553 ProSiteProfiles CRIB domain profile. 486 499 IPR000095 -
Cco08g0472 553 ProSiteProfiles Extended PHD (ePHD) domain profile. 1 69 IPR034732 -
Cco08g0472 553 ProSiteProfiles Post-SET domain profile. 370 386 IPR003616 -
Cco08g0472 553 ProSiteProfiles SET domain profile. 246 364 IPR001214 GO:0005515(InterPro)
Cco08g0472 553 FunFam Histone-lysine N-methyltransferase 182 403 - -
Cco08g0472 553 PANTHER PHD FINGER PROTEINS 15 399 IPR050701 GO:0000785(PANTHER)|GO:0006357(PANTHER)|GO:0018024(PANTHER)
Cco08g0472 553 CDD SET_SETD1-like 233 382 - -
Cco08g0472 553 SUPERFAMILY SET domain 244 383 IPR046341 -
Cco08g0472 553 SMART set_7 246 370 IPR001214 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0472 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0122 Cco-Chr6:1155487 Cco08g0472 Cco-Chr8:11994149 1.80E-35 dispersed
Cco08g0472 Cco-Chr8:11994149 Cco08g1066 Cco-Chr8:22473188 3.40E-38 dispersed
Cco08g0472 Cco-Chr8:11994149 Cco03g0486 Cco-Chr3:5107409 2.60E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1087 . . Bda03g01082 . . . Bma04g00996 . . . . . . . . . . . . . . . . . Cla08g00382 Cam08g0802 Cec08g0372 Cco08g0472 Clacu08g0515 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005576 1 2 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 4 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59743 PF00856 SET 3.00E-17 No_clan Cco TR