Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0484 ATGATAAGTGAGACTTTAAGCATTGAGATTAGGGAAAATATCAGCACCACCCATTCGATTTTGGAGCTTTACATCTCTCTTGTAGGGTTAGAGTTGTCTTATAAGTATCTCAATGTTGCTTCCTTGTGTTGCGGTGCAAATCATTCTTTAATTGGATATTTGAATAATAATCGAGTGGCTAGAGCGTGGCTGACCAACTTTCTGGAGAAGATCAAGCATTTGGTCGAATTGCTTGGTTTAAGCTTGTTGGTTGTGCCATTCTGTGGGACTGTGGAGAAGACCCATGCCCCTTCGGCGAGATTGACTTGTACCTTCATTTGCAAACATGTCAAAGTTAAGAGCTGGGTTAATGATGCTGAAGATGAAACCTTTGTTGGTCTAAGTGCAAGGTTTGGGACTTTGGTGCCTTCTCAGGCTGAAGATGATCTCAAACTACTAGCTGTTTATATGAATCCTAGAAATGGCTGTGCTAGTTCTTCTTCAAAGCTATCTGGATCAATTGCCTTGTCTATACGTGGTGAATGTGACTTCACAATTAAGGCAGAAATTGCACAGGCAGGGGGTGCTGCAGCCCTGTTGGTGATAAATGACAAAGAAGATCTTTACAAGATGGTCTGTTCTGAAAAAGACACTCCTCTCAACATTTCAATTCCTGTTGTGATGCTTCCCAAGTCCAGCGGAGATGCTCTCAACAAATTAATAACTGACGGAAAGAGAGTGAAACTTCTATTATATGCTCCAAAACGTCCAGTTGTGGACTTCTCTGTTGTATTTTTGTGGATGATGGCTGTTGGAACAGTTGCATGTGCTACACTTTGGTCAGAGATCACTGCTGAGCAGACTGAGGAGCGCTATAATGAATTATCACCGAAGGAATCTTCCAATCGTGGAGCAGCCAAAGATGACTTTGATAATGAAACCCTCGATATTAATGTCAAGAGTGCAGTAGTATTTGTCATTACGGCATCTAGTTTCTTGGTGCTGCTATATTTTTTTATGTCTTCTTGGTTCGTTTGGCTGTTGATTGTAATGTTCTGCATTGGTGGTGTAGAGGGTATGCATTCCTGTGTATTAGGACTGATATTAAGAAAACGGAAAAGTTGTGAGATGAAGACTGTGAATTTGCCTGTAGTAGGGGAGGTCACTATTCTTTCACTTGTTGTGCTGCTTTGTTGTATAACTTTTGCGGTTGTCTGGGCTCTGAATCGGCGTGCATCATATTCTTGGATTGGTCAAAATATTCTTGGTATTTGCCTGATGATAACAGTCTTGCAGATGGCCCGATTACCTAATATTAAGGTAGCAACAGTACTTCTTTGCTGTGCATTTATCTATGACATCTTCTGGGTGTTCATATCACCAGTAATATTCCACGAGAGTGTAATGATTGCGCAAATATACCTTTATGGAGGGAGATTGGATTCCAAGCTTCAAAGTTCGAATCAAATGGGAATAAAAAAGGGTTGTGGAGATCTATTCACAAGGCTATGCATAGCTGAAAATTGGTACAAAATTATTCTTGGTAAAGGCCATAAGATTCAGTTCTGGGAGGATTTTTGGATTGGTGACCAGAAACTTAAAGTGGCCTTCCCAAGAATTTATAATGTGGCTTCTATGAAGAATGGTTTAACTAATCAGCATTGGTCAACCTCATCCAGCGGCTGGGTTATACCGTTGAGAAGGCATTTGTCCAGTGACGAAGCTACAAATTGGTGTCCCCTCCAATCTTCTTGA 1734 40.89 MISETLSIEIRENISTTHSILELYISLVGLELSYKYLNVASLCCGANHSLIGYLNNNRVARAWLTNFLEKIKHLVELLGLSLLVVPFCGTVEKTHAPSARLTCTFICKHVKVKSWVNDAEDETFVGLSARFGTLVPSQAEDDLKLLAVYMNPRNGCASSSSKLSGSIALSIRGECDFTIKAEIAQAGGAAALLVINDKEDLYKMVCSEKDTPLNISIPVVMLPKSSGDALNKLITDGKRVKLLLYAPKRPVVDFSVVFLWMMAVGTVACATLWSEITAEQTEERYNELSPKESSNRGAAKDDFDNETLDINVKSAVVFVITASSFLVLLYFFMSSWFVWLLIVMFCIGGVEGMHSCVLGLILRKRKSCEMKTVNLPVVGEVTILSLVVLLCCITFAVVWALNRRASYSWIGQNILGICLMITVLQMARLPNIKVATVLLCCAFIYDIFWVFISPVIFHESVMIAQIYLYGGRLDSKLQSSNQMGIKKGCGDLFTRLCIAENWYKIILGKGHKIQFWEDFWIGDQKLKVAFPRIYNVASMKNGLTNQHWSTSSSGWVIPLRRHLSSDEATNWCPLQSS 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12257461 12285697 - CcPI632755_08g004840.1 Cco08g0484 184958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0484 577 FunFam Signal peptide peptidase-like 3 109 248 - -
Cco08g0484 577 Gene3D - 104 247 - -
Cco08g0484 577 Pfam Signal peptide peptidase 305 464 IPR007369 GO:0016020(InterPro)|GO:0042500(InterPro)
Cco08g0484 577 PANTHER SIGNAL PEPTIDE PEPTIDASE 155 464 IPR007369 GO:0005765(PANTHER)|GO:0016020(InterPro)|GO:0030660(PANTHER)|GO:0033619(PANTHER)|GO:0042500(PANTHER)|GO:0042500(InterPro)|GO:0071458(PANTHER)|GO:0071556(PANTHER)
Cco08g0484 577 SMART psh_8 306 521 IPR006639 GO:0016020(InterPro)|GO:0042500(InterPro)
Cco08g0484 577 SUPERFAMILY PA domain 135 202 IPR046450 -
Cco08g0484 577 Pfam PA domain 148 230 IPR003137 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0484 K09597 - - csv:101207965 632.098
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0372 Cco-Chr6:4156228 Cco08g0484 Cco-Chr8:12257461 3.20E-81 dispersed
Cco08g0484 Cco-Chr8:12257461 Cco10g2265 Cco-Chr10:35515033 5.60E-07 dispersed
Cco11g1453 Cco-Chr11:27318770 Cco08g0484 Cco-Chr8:12257461 2.80E-06 dispersed
Cco08g0484 Cco-Chr8:12257461 Cco01g0267 Cco-Chr1:2552844 2.70E-86 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1100 . . . . . . . . Cmo08g00877 Cmo17g00554 . . . . . . . . . . . . . . Cla08g00393 Cam08g0814 Cec08g0389 Cco08g0484 Clacu08g0523 . Cre08g0354 . . . Cone11ag0637 . . . . Blo02g00439 Blo07g00107 . Bda13g00263 . Bpe13g00727 Bma02g00979 Bma06g01433 . . . Cma08g00905 Cma17g00570 . Car17g00525 Cpe12g00484 . . . . . . . . . . . . . . . Lsi09g01570 . . Cme11g02164
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003023 1 2 2 2 0 2 2 2 2 1 2 1 2 1 1 3 2 1 2 2 1 1 1 1 1 3 1 3 4 1 50