Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0582 ATGGAAGCCGAGAGGCTTCTCAGAGATGGGCCCAGGAATAATTGGACTCGACAAGAGATTCGGGACATTTACGACTCTCCCGTGCTTGATCTGCTTTTCCATGGCGCGCAAGTTCATAGGCACACACACAATTTCCGGGAGGTGCAGCAGTGTACTCTCCTTTCAATCAAAACAGGTGGGTGTAGTGAGGATTGTTCCTACTGTCCTCAATCATCGAGATATGACACTGGAGTGAAAGCTCAAAAACTTATGACCAAGGATGTCGTCCTGGAGGCAGCCAAAAAGGCAAAAGAGGCTGGTAGCACAAGATTTTGTATGGGTGCTGCATGGAGAGACACAATAGGAAGAAAAACTAATTTCAATCAGATCCTTGATTATGTAAAAGAAATAAGAGAGATGGGGATGGAGGTCTGCTGCACCCTGGGCATGATAGAGAAGCAACAAGCTATTGACCTCAAAAAGGCAGGCCTAACAGCTTATAACCACAACCTAGACACGTCAAGGGAATACTATCCGAACATTATAACCACGAGGAGTTATGATGAGCGTTTGAAAACCCTAGAATTTGTTCGTGATGCTGGAATCAATGTCTGCTCAGGAGGAATAATTGGGCTTGGAGAGGCAGAAGAGGACCGTGTCGGTTTGCTGCATACCTTGGCAACGCTGCCTACACATCCTGAGAGTGTTCCCATCAACGCACTGGTTGCAGTGAAAGGAACCCCTCTTCAAGATCAAAAACCTGTTGAAATATGGGAGATGATTCGAATGATCGCTACAGCACGTATCACGATGCCGAAAGCGATGGTAAGGTTGTCAGCAGGTAGAGTGAAGTTCTCAGTGCCCGAGCAGGCGTTATGCTTCCTTGCGGGAGCAAATTCTATCTTCACCGGGGAAAAACTGCTAACGACGCCAAATAATGATTTTGATGCTGATCAACTCATGTTCAAGATGCTGGGTCTGATTCCAAAAGCTCCCAGTTTCACTGAAGATGTTGAGAAAGCCCCTGAAGAAGAGTCATTACAAGAAGCTGCTTCCAGTTCGTAA 1044 46.36 MEAERLLRDGPRNNWTRQEIRDIYDSPVLDLLFHGAQVHRHTHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMTKDVVLEAAKKAKEAGSTRFCMGAAWRDTIGRKTNFNQILDYVKEIREMGMEVCCTLGMIEKQQAIDLKKAGLTAYNHNLDTSREYYPNIITTRSYDERLKTLEFVRDAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALVAVKGTPLQDQKPVEIWEMIRMIATARITMPKAMVRLSAGRVKFSVPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKMLGLIPKAPSFTEDVEKAPEEESLQEAASSS 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15086139 15090509 + CcPI632755_08g005820.1 Cco08g0582 185056

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0582 347 SMART BATS_2 230 322 IPR010722 -
Cco08g0582 347 SFLD biotin synthase 11 327 IPR024177 -
Cco08g0582 347 SMART MiaB 51 259 IPR006638 GO:0003824(InterPro)|GO:0051536(InterPro)
Cco08g0582 347 FunFam Biotin synthase 12 325 - -
Cco08g0582 347 Pfam Radical SAM superfamily 56 217 IPR007197 GO:0003824(InterPro)|GO:0051536(InterPro)
Cco08g0582 347 CDD Radical_SAM 58 258 - -
Cco08g0582 347 MobiDBLite consensus disorder prediction 328 347 - -
Cco08g0582 347 PIRSF Biotin_synth 2 329 IPR024177 -
Cco08g0582 347 NCBIfam biotin synthase BioB 14 320 IPR002684 GO:0004076(InterPro)|GO:0009102(InterPro)
Cco08g0582 347 SUPERFAMILY Radical SAM enzymes 13 323 - -
Cco08g0582 347 Gene3D Aldolase class I 12 324 IPR013785 -
Cco08g0582 347 ProSiteProfiles Radical SAM core domain profile. 46 275 IPR007197 GO:0003824(InterPro)|GO:0051536(InterPro)
Cco08g0582 347 PANTHER BIOTIN SYNTHASE 1 343 IPR002684 GO:0004076(PANTHER)|GO:0004076(InterPro)|GO:0005739(PANTHER)|GO:0009102(PANTHER)|GO:0009102(InterPro)|GO:0051537(PANTHER)
Cco08g0582 347 SFLD biotin synthase like 11 327 - -
Cco08g0582 347 Hamap Biotin synthase [bioB]. 13 323 IPR002684 GO:0004076(InterPro)|GO:0009102(InterPro)
Cco08g0582 347 Pfam Biotin and Thiamin Synthesis associated domain 230 320 IPR010722 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0582 K01012 - - csv:101222084 657.907
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1189 . . . . . . . . . Cmo17g00574 . . . . . . . . . . . . . . Cla08g00450 Cam08g0879 Cec08g0460 Cco08g0582 Clacu08g0597 . Cre08g0419 Cone14ag0578 . . . . . . . . Blo07g00095 Bda11g00466 . . Bpe13g00733 . Bma06g01424 . . . . Cma17g00592 . Car17g00547 Cpe12g00504 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010238 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 31