Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0583 ATGATGTTCTTCTGGACGAAGAACAATTCGTCAAATCTCAACTTATTGTTCTTCTCAGAGCTCCAATTCCTTTTCAGTAAATCGATTATGTTCATTCAGTGTTTGTGGAGGATTTCTATCGGTTTGGTGATAGGAATTTCTTGCAAATATCGAATTGAAAGGTTCACAACGGCGTCGGCTGTGGAATTGCGTGGTTCTGACTGTTTGGTAGGTCTGGAGTGCTTTCTTAACGTTGTTAGGGCCCTCGGAATGGGATCATGCCTCTCTGGAGACCGGAACAAGCGAACGATCCCTTATTCTGAGCTTGCTTCTACTTCTCGTGATGATGGCGTTATTACGCGAAGGAATTCCAAGAGGAAGATTACGAGAAAGGGTTCTTCCCCCTCGAATGACTCTTCAAGGGAGATGTCGCTTCATCGAGTTCCCGGCCGGATGTTTTTGAATGGAACGACTGATCATGCCTCGCTCTTTACTAGGCAAGGCAAGAAAGGCGTCAATCAGGATGCTATGATTGTTTGGGAGAATTTTGGTCCAAAAGAAGATACAATATTTTGTGGAGTCTTTGATGGACACGGTCCCTTTGGCCATATGGTTGCAAAGAAAGTCAGAGATTCTCTTCCTCTAAAACTGAATGCTCAGTGGGAGTTGGATGCTGCCAGAAAGGCAGGGCAAAATGACATCAGATGTCAAGTGTCTCCACCAATGCTGGTTAACAAGGACTCTGGAACCTCTCATTGTGATCCTGGTCATCAGGGAAGTTACAGTGACATTTATATCATGCTGAAAGAGTCTTTTCTAAAGGCTTTTAAGGTGATGGACAAGGAGCTTAAACTACATCCATATATCGATTGTTATACCAGTGGTACAACATCAGTTGCATTGGTCAAACAGGGTCGGGATCTTATCATTGGAAATGTTGGGGACTCGCGGGCTGTTTTAGGTACCAGAGATGAATCTAACTCTCTCATTGCAGTTCAGTTGACTGTGGACCTCAAGCCAAATCTTCCAAGGGAAGCTGAAAGGATCAGACTTTGCAAAGGAAGAATCTTTGCTCTTCAAAATGAGCCTGAGATTTTTCGGGTTTGGCTTCCCAACAATGATTCTCCTGGGCTTGCTATGGCCAGAGCCTTCGGAGATTTCTGTTTGAAAGATTTTGGTGTGATAGCCGTGCCTGATGTTTCTTATTGTCATCTTACTGAGAACGATGAGTTTGTGGTACTGGCTACCGATGGGGTTTGGGATGTTCTCTCAAACGAAGAGGTTGTGGCAATTGTTGCATCATCTCCGAGATCTTCTGCAGCTCGTATCCTTGTGGACTCAGCTACTCGAGCATGGAGAATAAAGTACCCTACTGCCAAGGTGGATGATTGTGCCGTAGTCTGCCTGTACCTGGACTCTAATGAAAGTACTGCAGTGACAGCTAAAGAAAAGGAGTTCACCAATGACATGGAAACTTAG 1458 44.58 MMFFWTKNNSSNLNLLFFSELQFLFSKSIMFIQCLWRISIGLVIGISCKYRIERFTTASAVELRGSDCLVGLECFLNVVRALGMGSCLSGDRNKRTIPYSELASTSRDDGVITRRNSKRKITRKGSSPSNDSSREMSLHRVPGRMFLNGTTDHASLFTRQGKKGVNQDAMIVWENFGPKEDTIFCGVFDGHGPFGHMVAKKVRDSLPLKLNAQWELDAARKAGQNDIRCQVSPPMLVNKDSGTSHCDPGHQGSYSDIYIMLKESFLKAFKVMDKELKLHPYIDCYTSGTTSVALVKQGRDLIIGNVGDSRAVLGTRDESNSLIAVQLTVDLKPNLPREAERIRLCKGRIFALQNEPEIFRVWLPNNDSPGLAMARAFGDFCLKDFGVIAVPDVSYCHLTENDEFVVLATDGVWDVLSNEEVVAIVASSPRSSAARILVDSATRAWRIKYPTAKVDDCAVVCLYLDSNESTAVTAKEKEFTNDMET 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15105839 15109899 - CcPI632755_08g005830.1 Cco08g0583 185057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0583 485 ProSiteProfiles PPM-type phosphatase domain profile. 153 464 IPR001932 -
Cco08g0583 485 SMART PP2C_4 142 462 IPR001932 -
Cco08g0583 485 Gene3D - 148 466 IPR036457 -
Cco08g0583 485 MobiDBLite consensus disorder prediction 113 137 - -
Cco08g0583 485 PANTHER PROTEIN PHOSPHATASE 131 462 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco08g0583 485 Pfam Protein phosphatase 2C 166 438 IPR001932 -
Cco08g0583 485 SUPERFAMILY PP2C-like 152 465 IPR036457 -
Cco08g0583 485 CDD PP2Cc 153 464 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0583 Cco-Chr8:15105839 Cco11g0971 Cco-Chr11:15423598 7.90E-132 dispersed
Cco08g0583 Cco-Chr8:15105839 Cco02g1866 Cco-Chr2:31524948 7.20E-109 transposed
Cco08g0583 Cco-Chr8:15105839 Cco02g0124 Cco-Chr2:1344607 7.20E-109 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0583 - - - 0.0