Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0586 ATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTTGAATCCGTCGATGATGATTGCGATTTCTACAGCGGTGAGATGGACATTGGTATGGGTTATTACAGCGATGACGACGACCCTGATACTGAGGATTTCGTCGACGATGATACCGATGATTACTTCGAGTCCCGCCGACGCGAGCAAAATTATATGATACTAAATGAATCAGATATAAGACAACGCCAAGAGGACGACATTACAAGAATTTCTTCTGTACTTTCTATATCACGTGTAGCTTCAATTGTCTTGCTCCGCCACTTCAATTGGAGTGTTACCAAAGTCCACGATGAATGGTTTGCTGATGAAGCTCGAGTAAGGAAGCAAGTTGGCTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGAACCTGTGGAATCTGTTTTGAGTCCTATCCAAATAGTAGGATCAAGTCAGCTGCCTGTGGTCATCCTTTCTGTGCCTTCTGCTGGGAAGGCTACATTAGCACATCAATTAATGACGGTCCTGGATGTCTGATGTTGAGATGTCCCGATCCTTCTTGCGGTGCTGTGGTTGATCAAGACATGATTAATTCGTTGGCCTCCAATGAAGACAGGAAGAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACTAAATGGTGCCCAGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGCAATGGAAATTATGATGTTTCTTGCTTCTGCACATATGGCTTTTGCTGGAAATGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAATATGAACTGGATATTAGCAAATTCCAAGCCTTGTCCAAAGTGCAAGCGGCCAATCGAGAAAAACCAAGGGTGCATGCACATGACTTGCACACCCCCTTGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCGTGGTCTGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTTGCTAAGCAAGATGGTGTGTATGATGAGGCTGAGAAAAGAAGAGAAATGGCGAAGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCAATGGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGTAGACGAGTTTTGAAATGGACTTATGCATATGGTTATTACCTGCCGGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCTGAGTCTGGATTAGAAAGGCTCCATCAATGCGCCGAAAAGGAATTACTCCAGTTCCTCAATGCAGAAGGTCCATCAAAAGAATTTAACGACTTCCGCACAAAGCTGGCTGGTCTGACCAGTGTTACTCGAAATTACTTTGAGAACCTAGTTAGAGCATTAGAGAATGGGCTCTCAGATGTGAACTCTCATGGAGCAAGCAGCGGCACAACGAGCTCAAAAAGCACAGCAGGAAGTAGTAAAGGAGGGAGAAGTGGACGTGGTAAGGGAGTCAGTCGAACTGCTGGTTCGACCACCAGAAGTGGTGACAGCGCAACTCATTGGTCATGTGAGCACTGTACCTTTGTGAACATTAGATCTGCTACTACGTGCGAGATGTGCCATCAACGCCATTGA 1779 44.24 MDSEDDLHYSTDVESVDDDCDFYSGEMDIGMGYYSDDDDPDTEDFVDDDTDDYFESRRREQNYMILNESDIRQRQEDDITRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADEARVRKQVGLLEAPVVHVLNARERTCGICFESYPNSRIKSAACGHPFCAFCWEGYISTSINDGPGCLMLRCPDPSCGAVVDQDMINSLASNEDRKKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCFCTYGFCWKCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAMADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKSTAGSSKGGRSGRGKGVSRTAGSTTRSGDSATHWSCEHCTFVNIRSATTCEMCHQRH 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15248446 15255250 + CcPI632755_08g005860.1 Cco08g0586 185060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0586 592 CDD Rcat_RBR_ARI7-like 294 348 - -
Cco08g0586 592 ProSiteProfiles Zinc finger RanBP2 type profile. 561 592 IPR001876 -
Cco08g0586 592 FunFam RBR-type E3 ubiquitin transferase 134 223 - -
Cco08g0586 592 Pfam IBR domain, a half RING-finger domain 209 271 IPR002867 GO:0008270(InterPro)
Cco08g0586 592 CDD RING-HC_ARI6-like 137 198 - -
Cco08g0586 592 SUPERFAMILY RING/U-box 210 278 - -
Cco08g0586 592 SMART ibrneu5 209 271 IPR002867 GO:0008270(InterPro)
Cco08g0586 592 SMART ibrneu5 275 345 IPR002867 GO:0008270(InterPro)
Cco08g0586 592 FunFam RBR-type E3 ubiquitin transferase 272 522 - -
Cco08g0586 592 Pfam Ariadne domain 358 519 IPR045840 -
Cco08g0586 592 SUPERFAMILY RING/U-box 137 218 - -
Cco08g0586 592 MobiDBLite consensus disorder prediction 1 15 - -
Cco08g0586 592 SUPERFAMILY Ran binding protein zinc finger-like 565 590 IPR036443 -
Cco08g0586 592 Pfam IBR domain 293 333 - -
Cco08g0586 592 CDD BRcat_RBR_ANKIB1 216 280 - -
Cco08g0586 592 ProSiteProfiles Zinc finger RING-type profile. 140 184 IPR001841 -
Cco08g0586 592 ProSitePatterns Zinc finger RanBP2-type signature. 569 588 IPR001876 -
Cco08g0586 592 MobiDBLite consensus disorder prediction 1 21 - -
Cco08g0586 592 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 73 112 IPR048962 -
Cco08g0586 592 MobiDBLite consensus disorder prediction 523 567 - -
Cco08g0586 592 Gene3D - 562 592 - -
Cco08g0586 592 Gene3D - 267 522 - -
Cco08g0586 592 MobiDBLite consensus disorder prediction 552 567 - -
Cco08g0586 592 SUPERFAMILY RING/U-box 290 338 - -
Cco08g0586 592 Coils Coil 357 377 - -
Cco08g0586 592 SMART zf_4 567 591 IPR001876 -
Cco08g0586 592 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 88 398 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Cco08g0586 592 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 222 IPR013083 -
Cco08g0586 592 MobiDBLite consensus disorder prediction 523 543 - -
Cco08g0586 592 ProSiteProfiles TRIAD supradomain profile. 136 349 IPR044066 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0586 K11968 - - csv:101223037 1155.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0586 Cco-Chr8:15248446 Cco11g0927 Cco-Chr11:13872231 2.60E-129 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1195 Blo01g00201 . . Bda08g00149 . . . . Cmo08g00213 Cmo17g00577 . . . . . . . . . . . . . . Cla08g00460 Cam08g0887 Cec08g0471 Cco08g0586 Clacu08g0604 . Cre08g0424 Cone14ag0574 . . . . . . . . . . . Bpe05g00982 . . . . . . . Cma17g00596 Car08g00187 Car17g00550 Cpe12g00507 Cpe17g01099 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco09g1993 . 164 589 ARIADNE family AT4G34370 72.2 3.0e-183 638.3
Cco09g1993 . 58 542 ARIADNE family AT2G16090 77.2 1.4e-224 775.8
Cco09g1993 . 38 543 ARIADNE family AT3G27710 62.0 5.8e-184 641.0
Cco09g1993 . 44 522 ARIADNE family AT3G27720 54.5 5.4e-144 508.1
Cco08g0586 . 61 535 ARIADNE family AT1G05890 73.9 3.6e-219 758.1
Cco11g0927 . 14 273 ARIADNE family AT1G05890 73.2 1.0e-112 404.4
Cco08g0586 . 57 589 ARIADNE family AT1G65430 72.0 1.6e-240 828.9
Cco11g0927 . 25 274 ARIADNE family AT1G65430 84.8 2.2e-125 446.4
Cco08g0586 . 58 454 ARIADNE family AT2G31780 58.4 4.9e-144 508.1
Cco11g0927 . 16 188 ARIADNE family AT2G31780 54.3 1.1e-50 198.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72