Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0596 CCTGGGATATTCCTTCGTTCTCGGGCTACACCAGGCCAGAGCGCGGCAACAAGCAGCTCAGATGTTGTCTTCAGAAGCACCCACGGGGAATTTTATCAATCCAATCTAGCTCTTGCGTCGCCCATGTATCCAAAGCAAACTGGTTTGGGGGATGGACCAGTCTCCAGCCCACTACGCACAAGTGCTCGACCAAGGAGGAGGCCAATATCATGTGGTCGTCCATATGTATATTATGGTTCTTCTGCAACCTTCAAACCCAACAAGAAAAGAACCCCAGCTACTAGAATTGCCAAGATGCTCCGTCCAAAGAAGCAACCCATGCCAACTGTTAATGCTGTTCCAGTTGAAAAAAATTTGCGGCGGTCTCAACGACAGAAGAGGAGGCGTACAAATTTTAGCGGTTACACAGATTCTGAAGATGAAGACTTAATGAGTCCCAAGTATAAAATGCTGAGGAGTCAGAGGGCTAATAACTCGAATAAAAATGTTTTTTCTTCTCCAAAGCATAAAAAAAGCATGGAGAACAGACCAACTCCTAGGCGTGAGGGATTACGACCGCGTCATTCACGATTAGTTTCTAGAGACCGCTTGAATTCAGAATCAGATGATGAACAAGGTAGCTCAGAAGATAAAGGAAGCCAAGATGAGATTGAGAATGGGAATGATATAGAGGATAATGATGTGGATGATATTCAAAATGATGATGAGGGTGAGCCTGAACCTGAGGATGAGGGTGAGGAAGATGGTGATGATGAAGGAGGTGAAGAAGAACAAGAGGGACGTAGACGATATGATCTTCGAAACCGTCCTGATGCTCGTAGACTCTCCATAGGTGAAGGTAAACCAAGACCAAGATCTCCTCGCAGAGTATTACATCAAGGAATGGGGACAAAGGTTGGAAGAGATGTAAGGAGGGGTGGATCAAGAGTTCATAAACGTCGTATGGCGAGGATTGAAGATTCTGATGATTCCCTTCTTGTGGATGAGCTGGACCAAGCTCCTGGTATACCATGGGCACGAGGTGGAAGTAGATCTGGCCCACCTTGGCTGTTTGGAGGATTGGACATGCATGGGACTGCATCTTGGGGATTGAATATCGCAGCATCTGGTTGGGGTCACCAAAGTGATGCATTTTCGAGTTTAACTTCTGGTATTCAAACAGCTGGACCAAGCTCTAAGGGTGGGGCAGATATTCAACCTGTACAAGTTGATGAAAGTGTTAGCTTTGATGACATTGGTGGCTTGTCAGAATATATAGATGCTTTGAAGGAGATGGTATTCTTTCCTTTACTTTATCCCGATTTCTTTGCAAGTTATCATATAACCCCACCAAGAGGGGTGCTGTTATGTGGGCCTCCAGGTACTGGGAAAACATTAATTGCTAGAGCATTAGCCTGTGCTGCATCAAAGGCTGGCCAAAAGGTCAGTTTCTACATGCGGAAGGGTGCTGATGTTCTAAGCAAGTGGGTGGGTGAGGCTGAGCGACAATTGAAACTACTTTTTGAAGAAGCACAAAGGAATCAGCCTTCTATAATATTCTTTGATGAAATTGATGGGCTTGCTCCAGTTAGATCAAGCAAACAGGAGCAAATTCATAATTCCATCGTTTCCACATTGCTTGCTTTGATGGATGGGCTAGACTCTCGCGGTCAGGTTGTATTGATTGGAGCTACTAATCGGATTGATGCCATTGATGGAGCCCTACGCCGCCCCGGTCGTTTTGATCGTGAATTTAACTTTCCATTGCCTGGATGTGATGCACGTGCTGAGATCTTGACCATTCACACGCGCAAGTGGAAGAATCCTCCTTCAGAGGAGCTTCGATCAGAACTTGCTGCTACTTGTGTAGGTTATTGTGGTGCTGATTTGAAGGCTCTCTGCACTGAGGCTGCTATTCGAGCTTTCCGCCAAAAGTACCCTCAGGTTTACACCAGTGATGACAAGTTTCTAATAGATGTTGAATCTGTCAAGGTTGAGAAGTATCATTTTGTTGAAGCAATGTCCACAATTACTCCTGCTGCCCATCGAGGTGCTGTAGTGCATTCTCGGCCGCTATCTTCTGTAGTTGCACCATGTTTGCAAAGACATCTTCATAAAGCCATGATTTTCTTATCTGATGCCTTTCCATTAGCAGCATCATCTGAGTTTGCCAAACTGTCCATGCTTTCTTTTGGATCTGCAATTCCACTAGTGTGTAGACCACGACTTTTGCTTTGTGGTGGTGAAGACGTTGGGTTGGATCACCTTGGCCCTGCGATCTTACATGAACTGGAGAAATTTCCTGTTCATTCTCTGGGACTTCCGTCACTGCTTTCTGATCCTAGTGCAAAGACACCTGAGGAAGCATTGGTACATATATTTGGTGAAGCAAGGAGGACTACTCCATCGATACTCTACCTACCGCAGTTTCATCGTTGGTGGGAGACAGCAGATCAGCAGTTGAGAGCTGTTTTATTGACTCTGTTAGAGGAGCTACCTTCTGACCTACCCATATTACTGCTCGGAACATCCTTAGTCTCGCTTGTTGAAGTTGATGAGAAAGCTTCTATGATTTTTCCGGATCGCGGGATCTATCAAGTCAGTCCACCGTCCAGTGAAGATAAGTCATTGTTTTTTACCCATTTAATTGAGGCTGCTTCCTCGGTTTTGCTGGAGGGCATGGATAAAAAAGTGCAAGTGTCTGGAACCCTTCCCGAGCTTCCCAAGGCTCCAGTAGTTGCCAGTGGACCAAAGGTTTCTGAGTTAAAAGCCAAGTTAGAAGCTGAACAGCATGCCCTTCGGCGTTTACGAATGTGTCTTAGAGATGTTTGCAACCGGATTTTATATGATAAAAGGTTTACTGTCTTCCATTACCCTGTTCTTGATGAGGATGCTCCCAATTACCGCTCAGTCGTCCAGAACCCAATGGACATGGCTACATTGCTTCAACGTGTTGACTCTGGACAGTATATTACATGTTCAGCATTTATTCAAGATGTCGATCTTATTGTTTCCAATGCGAAGGCTTATAATGGAGATGATTACAATGGTGCTAGGATTGTTAGCAGAGCTTATGAGCTTCGCGACGCTGTCCATGGAATGCTGACACAGATGGATCCCGCACTGGTTGCATTCTGTGACAATATAGCTGCCCAAGGTGGCCCGTTGAACGTGCCAGATGAACTTGGGGGAACTGTGTTTCCATCTGCCCCAGCTGTGCAGATGGGAACTGTTACTCGAGCTAGTGCTCGATTGCGTAATGTCCAGCCAGAGGTTGACTTCAATAGAAGTTACGAGGCATTAAAACGCCCAAAGAAGAATATGGATGCTGCTCATCATGCAGAAGAGAAAGCACCACCCCATCAAGATTCAGTTGCACCAAAACCATCCCAGGAGCCTGATACGAGCGAAGCAAGTCGGGAAAGTTCAAAAGCCTGTCTGGGTAGTGGGAATCAGTGTGATGCTTCTGGTGGAGAAGCTTCTGATCTCACAGATTGGAATGGTTCACAAGATGCGTCGGTATCAGATTGCTATATTTCGAACCAAGTTGAGTCGGTGAAGAATGTACTTGTGGAGCGAACAAGGAAGTATGGAATTCCAGAGCTTGAAAGACTATATACTCGAATAATGAAGGGTGTTTTCAAGATTAAAGATAAAGGAGGCAAGGATGATCCTAAGCATTCAATTTTGAAGTTTTTATTGAAATTTGCTGAGGATGAGTCTAATTTCTGA 3711 45.19 PGIFLRSRATPGQSAATSSSDVVFRSTHGEFYQSNLALASPMYPKQTGLGDGPVSSPLRTSARPRRRPISCGRPYVYYGSSATFKPNKKRTPATRIAKMLRPKKQPMPTVNAVPVEKNLRRSQRQKRRRTNFSGYTDSEDEDLMSPKYKMLRSQRANNSNKNVFSSPKHKKSMENRPTPRREGLRPRHSRLVSRDRLNSESDDEQGSSEDKGSQDEIENGNDIEDNDVDDIQNDDEGEPEPEDEGEEDGDDEGGEEEQEGRRRYDLRNRPDARRLSIGEGKPRPRSPRRVLHQGMGTKVGRDVRRGGSRVHKRRMARIEDSDDSLLVDELDQAPGIPWARGGSRSGPPWLFGGLDMHGTASWGLNIAASGWGHQSDAFSSLTSGIQTAGPSSKGGADIQPVQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCDARAEILTIHTRKWKNPPSEELRSELAATCVGYCGADLKALCTEAAIRAFRQKYPQVYTSDDKFLIDVESVKVEKYHFVEAMSTITPAAHRGAVVHSRPLSSVVAPCLQRHLHKAMIFLSDAFPLAASSEFAKLSMLSFGSAIPLVCRPRLLLCGGEDVGLDHLGPAILHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFHRWWETADQQLRAVLLTLLEELPSDLPILLLGTSLVSLVEVDEKASMIFPDRGIYQVSPPSSEDKSLFFTHLIEAASSVLLEGMDKKVQVSGTLPELPKAPVVASGPKVSELKAKLEAEQHALRRLRMCLRDVCNRILYDKRFTVFHYPVLDEDAPNYRSVVQNPMDMATLLQRVDSGQYITCSAFIQDVDLIVSNAKAYNGDDYNGARIVSRAYELRDAVHGMLTQMDPALVAFCDNIAAQGGPLNVPDELGGTVFPSAPAVQMGTVTRASARLRNVQPEVDFNRSYEALKRPKKNMDAAHHAEEKAPPHQDSVAPKPSQEPDTSEASRESSKACLGSGNQCDASGGEASDLTDWNGSQDASVSDCYISNQVESVKNVLVERTRKYGIPELERLYTRIMKGVFKIKDKGGKDDPKHSILKFLLKFAEDESNF 1236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15558721 15571642 - CcPI632755_08g005960.1 Cco08g0596 185070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0596 1236 Pfam Bromodomain 938 1007 IPR001487 GO:0005515(InterPro)
Cco08g0596 1236 PRINTS Bromodomain signature 974 992 IPR001487 GO:0005515(InterPro)
Cco08g0596 1236 PRINTS Bromodomain signature 958 974 IPR001487 GO:0005515(InterPro)
Cco08g0596 1236 PRINTS Bromodomain signature 992 1011 IPR001487 GO:0005515(InterPro)
Cco08g0596 1236 CDD Bromo_AAA 926 1036 - -
Cco08g0596 1236 MobiDBLite consensus disorder prediction 1133 1160 - -
Cco08g0596 1236 MobiDBLite consensus disorder prediction 151 166 - -
Cco08g0596 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 405 670 IPR027417 -
Cco08g0596 1236 SMART bromo_6 926 1033 IPR001487 GO:0005515(InterPro)
Cco08g0596 1236 Gene3D - 583 668 - -
Cco08g0596 1236 Gene3D - 405 675 IPR027417 -
Cco08g0596 1236 MobiDBLite consensus disorder prediction 130 148 - -
Cco08g0596 1236 MobiDBLite consensus disorder prediction 219 255 - -
Cco08g0596 1236 MobiDBLite consensus disorder prediction 1 21 - -
Cco08g0596 1236 Pfam AAA+ lid domain 609 646 IPR041569 -
Cco08g0596 1236 Pfam ATPase family associated with various cellular activities (AAA) 447 582 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco08g0596 1236 SUPERFAMILY Bromodomain 924 1036 IPR036427 GO:0005515(InterPro)
Cco08g0596 1236 ProSiteProfiles Bromodomain profile. 949 1011 IPR001487 GO:0005515(InterPro)
Cco08g0596 1236 FunFam ATPase family, AAA domain-containing 2 405 588 - -
Cco08g0596 1236 MobiDBLite consensus disorder prediction 1089 1115 - -
Cco08g0596 1236 ProSitePatterns AAA-protein family signature. 552 570 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco08g0596 1236 FunFam ATPase family AAA domain-containing protein 2B 583 668 - -
Cco08g0596 1236 Gene3D - 918 1046 IPR036427 GO:0005515(InterPro)
Cco08g0596 1236 PANTHER AAA DOMAIN-CONTAINING 101 1137 IPR045199 GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0016887(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Cco08g0596 1236 MobiDBLite consensus disorder prediction 1089 1160 - -
Cco08g0596 1236 FunFam ATPase family AAA domain-containing protein 918 1046 - -
Cco08g0596 1236 MobiDBLite consensus disorder prediction 98 311 - -
Cco08g0596 1236 MobiDBLite consensus disorder prediction 256 286 - -
Cco08g0596 1236 MobiDBLite consensus disorder prediction 167 218 - -
Cco08g0596 1236 SMART AAA_5 443 584 IPR003593 GO:0016887(InterPro)
Cco08g0596 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 731 877 IPR027417 -
Cco08g0596 1236 MobiDBLite consensus disorder prediction 42 72 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0596 K22531 - - csv:101203476 2119.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0045 Cco-Chr8:206615 Cco08g0596 Cco-Chr8:15558721 1.30E-69 dispersed
Cco08g0596 Cco-Chr8:15558721 Cco09g0326 Cco-Chr9:2849954 1.00E-42 dispersed
Cco08g0596 Cco-Chr8:15558721 Cco10g2002 Cco-Chr10:33548803 1.90E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1203 . . . . . . . . Cmo08g00210 . . . . . . . . . . . . . . . Cla08g00471 Cam08g0895 . Cco08g0596 Clacu08g0614 . Cre08g0434 . . . Cone11ag0618 . . . . . Blo07g00085 Bda11g00455 . . Bpe13g00740 . Bma06g01415 . . . . . . . . Cpe17g01096 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009586 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33