Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g0620 | ATGAACCTCACTACTCTTGTTTTCTGGATCATCCAGATCTCCATCCATGCAGTTCGAGTTTTTTCTAAAACCAAAGCGCCAGACGTTTCTGCATTAAATGTGATGTTTAGTAGTTTAAATTCACCTTCACAACTCTCTGGTTGGGGTTCAAGTGGGGGTGATCCATGTGGGGATTCTTGGGAAGGGATCCAATGCTCAGGATCATCTGTCACTGAAATAAGTTTATCAGACTTTGGACTAAGTGGTTCAATGGGTTACCAGCTTTCAAATTTGGCAACTGTCACCTACTTTGATTTGAGCAAGAACAACCTCAATGGTGATATCCCCTATCAACTTCCCCCTAATGCAGTTCACATCGATCTTTCTGGGAACAGCTTCACTGGTAGTGTGCCTTATTCAATTTCTCAGATGGCTGATCTTGAATTTTTAAATCTTGGTCATAATAAGCTTAGCAACCAATTGAGTGACATGTTTGGCAAGCTTTCTAAACTCAAAAGGATGGATCTCTCATACAACTCAATTTCCGGAAACTTACCTCAAAGTTTTAAAAAGCTTTCAAGCCTTACCGTATTGCATATACAAGATAATAAATTTTCAGGTTCAATCAATGTTCTTGCTGACCTTCCACTTGATGATTTGAATGTTGCAAATAACAAATTCACCGGATGGATTCCTGAAAGTCTTGAAGATATAGATAACTTGGAAACTGTAGGAAATTCATGGTCATCTGGACCAGCACCACCTCCACCACCAGGGACGGTATCTCCGAAAGGCAAGAACTCGAAGAAGGACGAGTCGAGAGGGAAATCGTCCGTGATAAGTGGGTTAGTGATAGCAGGAATAGCCATGGGAGTTTTAGCAATAATTGCAATAGTGATTGGATTTATGTCAAGAAGGCATAAATCCTTCACTCCTTCCCATTTTCTTGATGAAGACACAAGCCAACACAGATCCTTCACTCCACTCACATCCCAGGAACTCCCAAAGGGAAATTTGTACAATAATAATAATGCTAATAATAATACTAATAATGATAGAAAATCCTTCAATTCTGATGCCTCTGTTGACATAAAAGGTCTAAGTGTTGTTAGGCCACCTCCAGCTCCTTCTGATCCTGTTCAATCCTTCAGTGATAATCAATTTGCAAGCCGTTTGAATTCAAGGAGAAGCACTTCCTTTCGTGCCATTTCTTATTCTTTACTTGATTTGCAAACTGCCACTTCCAATTTTGCCCCTGCTCGCCTTCTCGGTGAGGGTACGATCGGACGTGTTTATAAGGCTAAGTATGGAGATGGAAAGGTATTGGCAGTGAAGAAGATAGATTCATCAGTTTTTCAAGGGAGAAGAACAGAGGAGTTTGGTGAAGTAGTTGGAATAATCTCAAAGCTTCATCACACAAACATTACAGAAGTGGTTGGGTTTTGTTCAGAGCAAGGACATCATTTGCTGGTTTATGAATATTTCATGAATGGTTCACTTCATGAGTTTCTTCATATGTCTGATGACTTTAGTAAACCACTCACTTGGAACACTAGAGTCAGAATTGCTTTGGGGACTGCAAGAGCTCTTGAGTATCTGCACGAAGTTTGCTCACCGTCCATAATTCACATGAATATCAAGTCCTCTAATATATTGCTTGATGCGGAACTTAATCCTCGTCTCTCAGATTATGGTTTGGCAACATTTTATAAGCATAGAAGCCAAAACCCTGGAGGTGGATATGATGCTCCGGAATGCCTAAAGGGTTCAACTTATACAATGAAGAGTGATATTTACAGTTTGGGAGTGGTGATGTTGGAATTGTTGACGGGGCGGATGCCTTATGACTCTGAGAAAGCAAAGGTGGAACAATGTCTAGTAAGATGGGCAACACCACAGCTACATGACATAGATGCATTGGACAAAATGGTGGATCCTGCCTTGCGAGGTTTATATCCTCCAAAATCAGTGTCTAGATTTGCAGATATCATTGCCCTTTGCGTTCAATCAGAGCCTGAATTTAGGCCTCCCATGTCCGAAGTGGTTCAAGCCTTGGTTACTTTGGTTCAACGATCAAGCATGAATATGAGAGATGATCTTGGAAACTCTCGACGAATGGATGATTATGACTATTAA | 2115 | 40.71 | MNLTTLVFWIIQISIHAVRVFSKTKAPDVSALNVMFSSLNSPSQLSGWGSSGGDPCGDSWEGIQCSGSSVTEISLSDFGLSGSMGYQLSNLATVTYFDLSKNNLNGDIPYQLPPNAVHIDLSGNSFTGSVPYSISQMADLEFLNLGHNKLSNQLSDMFGKLSKLKRMDLSYNSISGNLPQSFKKLSSLTVLHIQDNKFSGSINVLADLPLDDLNVANNKFTGWIPESLEDIDNLETVGNSWSSGPAPPPPPGTVSPKGKNSKKDESRGKSSVISGLVIAGIAMGVLAIIAIVIGFMSRRHKSFTPSHFLDEDTSQHRSFTPLTSQELPKGNLYNNNNANNNTNNDRKSFNSDASVDIKGLSVVRPPPAPSDPVQSFSDNQFASRLNSRRSTSFRAISYSLLDLQTATSNFAPARLLGEGTIGRVYKAKYGDGKVLAVKKIDSSVFQGRRTEEFGEVVGIISKLHHTNITEVVGFCSEQGHHLLVYEYFMNGSLHEFLHMSDDFSKPLTWNTRVRIALGTARALEYLHEVCSPSIIHMNIKSSNILLDAELNPRLSDYGLATFYKHRSQNPGGGYDAPECLKGSTYTMKSDIYSLGVVMLELLTGRMPYDSEKAKVEQCLVRWATPQLHDIDALDKMVDPALRGLYPPKSVSRFADIIALCVQSEPEFRPPMSEVVQALVTLVQRSSMNMRDDLGNSRRMDDYDY | 704 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 16308947 | 16318114 | - | CcPI632755_08g006200.1 | Cco08g0620 | 185094 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g0620 | 704 | SUPERFAMILY | Protein kinase-like (PK-like) | 390 | 678 | IPR011009 | - | |
Cco08g0620 | 704 | Pfam | Leucine rich repeat N-terminal domain | 27 | 66 | IPR013210 | - | |
Cco08g0620 | 704 | Pfam | Leucine Rich Repeat | 118 | 137 | IPR001611 | GO:0005515(InterPro) | |
Cco08g0620 | 704 | Pfam | Protein kinase domain | 413 | 676 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco08g0620 | 704 | ProSiteProfiles | Protein kinase domain profile. | 410 | 681 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco08g0620 | 704 | Pfam | Leucine rich repeat | 156 | 198 | IPR001611 | GO:0005515(InterPro) | |
Cco08g0620 | 704 | FunFam | Protein STRUBBELIG-RECEPTOR FAMILY 8 | 376 | 487 | - | - | |
Cco08g0620 | 704 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 3 | 25 | 252 | - | - | |
Cco08g0620 | 704 | PANTHER | LEUCINE RICH REPEAT KINASE 2 | 270 | 680 | IPR051420 | - | |
Cco08g0620 | 704 | MobiDBLite | consensus disorder prediction | 307 | 350 | - | - | |
Cco08g0620 | 704 | MobiDBLite | consensus disorder prediction | 235 | 267 | - | - | |
Cco08g0620 | 704 | Gene3D | Transferase(Phosphotransferase) domain 1 | 488 | 701 | - | - | |
Cco08g0620 | 704 | SUPERFAMILY | L domain-like | 27 | 236 | - | - | |
Cco08g0620 | 704 | MobiDBLite | consensus disorder prediction | 315 | 350 | - | - | |
Cco08g0620 | 704 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 8 | 488 | 692 | - | - | |
Cco08g0620 | 704 | Gene3D | Ribonuclease Inhibitor | 25 | 253 | IPR032675 | - | |
Cco08g0620 | 704 | Gene3D | Phosphorylase Kinase; domain 1 | 374 | 487 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g1034 | Cco-Chr1:13238916 | Cco08g0620 | Cco-Chr8:16308947 | 8.60E-135 | dispersed | |
Cco02g0132 | Cco-Chr2:1379051 | Cco08g0620 | Cco-Chr8:16308947 | 6.00E-105 | dispersed | |
Cco08g0620 | Cco-Chr8:16308947 | Cco09g0147 | Cco-Chr9:1310727 | 1.60E-136 | dispersed | |
Cco08g0620 | Cco-Chr8:16308947 | Cco07g1502 | Cco-Chr7:29092005 | 3.30E-163 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87016 | PF00069 | Pkinase | 1.80E-43 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g0620 | - | - | - | 0.0 |