Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0620 ATGAACCTCACTACTCTTGTTTTCTGGATCATCCAGATCTCCATCCATGCAGTTCGAGTTTTTTCTAAAACCAAAGCGCCAGACGTTTCTGCATTAAATGTGATGTTTAGTAGTTTAAATTCACCTTCACAACTCTCTGGTTGGGGTTCAAGTGGGGGTGATCCATGTGGGGATTCTTGGGAAGGGATCCAATGCTCAGGATCATCTGTCACTGAAATAAGTTTATCAGACTTTGGACTAAGTGGTTCAATGGGTTACCAGCTTTCAAATTTGGCAACTGTCACCTACTTTGATTTGAGCAAGAACAACCTCAATGGTGATATCCCCTATCAACTTCCCCCTAATGCAGTTCACATCGATCTTTCTGGGAACAGCTTCACTGGTAGTGTGCCTTATTCAATTTCTCAGATGGCTGATCTTGAATTTTTAAATCTTGGTCATAATAAGCTTAGCAACCAATTGAGTGACATGTTTGGCAAGCTTTCTAAACTCAAAAGGATGGATCTCTCATACAACTCAATTTCCGGAAACTTACCTCAAAGTTTTAAAAAGCTTTCAAGCCTTACCGTATTGCATATACAAGATAATAAATTTTCAGGTTCAATCAATGTTCTTGCTGACCTTCCACTTGATGATTTGAATGTTGCAAATAACAAATTCACCGGATGGATTCCTGAAAGTCTTGAAGATATAGATAACTTGGAAACTGTAGGAAATTCATGGTCATCTGGACCAGCACCACCTCCACCACCAGGGACGGTATCTCCGAAAGGCAAGAACTCGAAGAAGGACGAGTCGAGAGGGAAATCGTCCGTGATAAGTGGGTTAGTGATAGCAGGAATAGCCATGGGAGTTTTAGCAATAATTGCAATAGTGATTGGATTTATGTCAAGAAGGCATAAATCCTTCACTCCTTCCCATTTTCTTGATGAAGACACAAGCCAACACAGATCCTTCACTCCACTCACATCCCAGGAACTCCCAAAGGGAAATTTGTACAATAATAATAATGCTAATAATAATACTAATAATGATAGAAAATCCTTCAATTCTGATGCCTCTGTTGACATAAAAGGTCTAAGTGTTGTTAGGCCACCTCCAGCTCCTTCTGATCCTGTTCAATCCTTCAGTGATAATCAATTTGCAAGCCGTTTGAATTCAAGGAGAAGCACTTCCTTTCGTGCCATTTCTTATTCTTTACTTGATTTGCAAACTGCCACTTCCAATTTTGCCCCTGCTCGCCTTCTCGGTGAGGGTACGATCGGACGTGTTTATAAGGCTAAGTATGGAGATGGAAAGGTATTGGCAGTGAAGAAGATAGATTCATCAGTTTTTCAAGGGAGAAGAACAGAGGAGTTTGGTGAAGTAGTTGGAATAATCTCAAAGCTTCATCACACAAACATTACAGAAGTGGTTGGGTTTTGTTCAGAGCAAGGACATCATTTGCTGGTTTATGAATATTTCATGAATGGTTCACTTCATGAGTTTCTTCATATGTCTGATGACTTTAGTAAACCACTCACTTGGAACACTAGAGTCAGAATTGCTTTGGGGACTGCAAGAGCTCTTGAGTATCTGCACGAAGTTTGCTCACCGTCCATAATTCACATGAATATCAAGTCCTCTAATATATTGCTTGATGCGGAACTTAATCCTCGTCTCTCAGATTATGGTTTGGCAACATTTTATAAGCATAGAAGCCAAAACCCTGGAGGTGGATATGATGCTCCGGAATGCCTAAAGGGTTCAACTTATACAATGAAGAGTGATATTTACAGTTTGGGAGTGGTGATGTTGGAATTGTTGACGGGGCGGATGCCTTATGACTCTGAGAAAGCAAAGGTGGAACAATGTCTAGTAAGATGGGCAACACCACAGCTACATGACATAGATGCATTGGACAAAATGGTGGATCCTGCCTTGCGAGGTTTATATCCTCCAAAATCAGTGTCTAGATTTGCAGATATCATTGCCCTTTGCGTTCAATCAGAGCCTGAATTTAGGCCTCCCATGTCCGAAGTGGTTCAAGCCTTGGTTACTTTGGTTCAACGATCAAGCATGAATATGAGAGATGATCTTGGAAACTCTCGACGAATGGATGATTATGACTATTAA 2115 40.71 MNLTTLVFWIIQISIHAVRVFSKTKAPDVSALNVMFSSLNSPSQLSGWGSSGGDPCGDSWEGIQCSGSSVTEISLSDFGLSGSMGYQLSNLATVTYFDLSKNNLNGDIPYQLPPNAVHIDLSGNSFTGSVPYSISQMADLEFLNLGHNKLSNQLSDMFGKLSKLKRMDLSYNSISGNLPQSFKKLSSLTVLHIQDNKFSGSINVLADLPLDDLNVANNKFTGWIPESLEDIDNLETVGNSWSSGPAPPPPPGTVSPKGKNSKKDESRGKSSVISGLVIAGIAMGVLAIIAIVIGFMSRRHKSFTPSHFLDEDTSQHRSFTPLTSQELPKGNLYNNNNANNNTNNDRKSFNSDASVDIKGLSVVRPPPAPSDPVQSFSDNQFASRLNSRRSTSFRAISYSLLDLQTATSNFAPARLLGEGTIGRVYKAKYGDGKVLAVKKIDSSVFQGRRTEEFGEVVGIISKLHHTNITEVVGFCSEQGHHLLVYEYFMNGSLHEFLHMSDDFSKPLTWNTRVRIALGTARALEYLHEVCSPSIIHMNIKSSNILLDAELNPRLSDYGLATFYKHRSQNPGGGYDAPECLKGSTYTMKSDIYSLGVVMLELLTGRMPYDSEKAKVEQCLVRWATPQLHDIDALDKMVDPALRGLYPPKSVSRFADIIALCVQSEPEFRPPMSEVVQALVTLVQRSSMNMRDDLGNSRRMDDYDY 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16308947 16318114 - CcPI632755_08g006200.1 Cco08g0620 185094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0620 704 SUPERFAMILY Protein kinase-like (PK-like) 390 678 IPR011009 -
Cco08g0620 704 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cco08g0620 704 Pfam Leucine Rich Repeat 118 137 IPR001611 GO:0005515(InterPro)
Cco08g0620 704 Pfam Protein kinase domain 413 676 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g0620 704 ProSiteProfiles Protein kinase domain profile. 410 681 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g0620 704 Pfam Leucine rich repeat 156 198 IPR001611 GO:0005515(InterPro)
Cco08g0620 704 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 376 487 - -
Cco08g0620 704 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 25 252 - -
Cco08g0620 704 PANTHER LEUCINE RICH REPEAT KINASE 2 270 680 IPR051420 -
Cco08g0620 704 MobiDBLite consensus disorder prediction 307 350 - -
Cco08g0620 704 MobiDBLite consensus disorder prediction 235 267 - -
Cco08g0620 704 Gene3D Transferase(Phosphotransferase) domain 1 488 701 - -
Cco08g0620 704 SUPERFAMILY L domain-like 27 236 - -
Cco08g0620 704 MobiDBLite consensus disorder prediction 315 350 - -
Cco08g0620 704 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 488 692 - -
Cco08g0620 704 Gene3D Ribonuclease Inhibitor 25 253 IPR032675 -
Cco08g0620 704 Gene3D Phosphorylase Kinase; domain 1 374 487 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1034 Cco-Chr1:13238916 Cco08g0620 Cco-Chr8:16308947 8.60E-135 dispersed
Cco02g0132 Cco-Chr2:1379051 Cco08g0620 Cco-Chr8:16308947 6.00E-105 dispersed
Cco08g0620 Cco-Chr8:16308947 Cco09g0147 Cco-Chr9:1310727 1.60E-136 dispersed
Cco08g0620 Cco-Chr8:16308947 Cco07g1502 Cco-Chr7:29092005 3.30E-163 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87016 PF00069 Pkinase 1.80E-43 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0620 - - - 0.0