Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0631 ATGAGCTCCAATCATTTAGAGATGATGAGCAACCATTTTACAGTGGAGAACTCCAATCAAAGTGATCATCAAGCACCAATAAGCTCCATTAATCCTTTTTTCACTGAGAGCTTTTGTCTTGAAAAGTTTGCTTATTTTAATGAAATCCCTAGCTGTGTTCCACCTCCTCTTTACTCTTCATTTCCTACATTTAACAGAGAAGATCCCAAGAGGTTGGGAGGAAGAAAGAGGAAAAGAGAAAATGAAAGGGATGAGGAGAAGCCAAAAGAAGTGATTCATGTGCGGGCAAAAAGAGGTGAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTAAGAAGAGAGAAAATAAACCAGAGGCTGAGGTTCTTACAGGACTTGGTTCCAGGATGCTACAAGACAATGGGAATGGCAGTTATGTTGGATGTGATCATAAATTACATCCAATCTCTGCAGAATCAGATTGAGTTTCTCTCCATGAAGCTTTCAGTTGCTAGTCGCTACTATGATTTCAACAACAGCTCGGAGACTAATGGCGCCGAGATAATGCAGGCAACAAAAGGGTGTGATGATATTCAAGAGATGCAGAGGATTGTACTTAGAGAAGAAGGGTATGGAGGGCCCTCCTACCACCACTCTACTTTTCCACCTCTCTAA 654 41.44 MSSNHLEMMSNHFTVENSNQSDHQAPISSINPFFTESFCLEKFAYFNEIPSCVPPPLYSSFPTFNREDPKRLGGRKRKRENERDEEKPKEVIHVRAKRGEATDSHSLAERVRREKINQRLRFLQDLVPGCYKTMGMAVMLDVIINYIQSLQNQIEFLSMKLSVASRYYDFNNSSETNGAEIMQATKGCDDIQEMQRIVLREEGYGGPSYHHSTFPPL 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16651876 16657656 + CcPI632755_08g006310.1 Cco08g0631 185105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0631 217 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 75 175 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cco08g0631 217 CDD bHLH_AtBPE_like 90 174 - -
Cco08g0631 217 Gene3D - 97 168 IPR036638 GO:0046983(InterPro)
Cco08g0631 217 MobiDBLite consensus disorder prediction 68 90 - -
Cco08g0631 217 SMART finulus 106 156 IPR011598 GO:0046983(InterPro)
Cco08g0631 217 Pfam Helix-loop-helix DNA-binding domain 104 151 IPR011598 GO:0046983(InterPro)
Cco08g0631 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 98 169 IPR036638 GO:0046983(InterPro)
Cco08g0631 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 150 IPR011598 GO:0046983(InterPro)
Cco08g0631 217 MobiDBLite consensus disorder prediction 64 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1702 Cco-Chr1:29741474 Cco08g0631 Cco-Chr8:16651876 2.90E-38 dispersed
Cco05g1328 Cco-Chr5:14057305 Cco08g0631 Cco-Chr8:16651876 5.30E-31 dispersed
Cco08g0631 Cco-Chr8:16651876 Cco09g0834 Cco-Chr9:7790126 6.20E-28 dispersed
Cco08g0631 Cco-Chr8:16651876 Cco06g1671 Cco-Chr6:27293300 1.30E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59748 PF00010 HLH 6.40E-06 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0631 - - - 0.0