Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0647 ATGGTTTACTCCGACAAAATGCAAGAAATTGCATCCAAAATGGGTTTCACACTCTCCGATTTCGCCGATACTTTGGAACAAGAACGCCGTAAAGTCCTCATGTTTCAGCGCGAGCTCCCTCTCTGTTTGCAGCTCGTTTCCCATGCCATTGATTGTTGCAGGCAGCAGTTATCGGAGACGACGACGGAAAATCGTCAATCGGAATGCTCCGAGCAGACTTCCAGTGACATGGGTCCGGTTCTTGAGGAGTTCATTCCGATTAACAGAACTGGGGTTTCTGATTTTGAACAAACGGAGAAAAATAAGAATAACGATGACTCTGATTTAAACAATTTGAATTTGGCTCCGTCTGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACTTCAGATCCTCCTCCCCTGAATCAGGACCAGGCAGAGAACACGCCGGTTGTCGACGTCAACAGAAATGGCGGCGCTTTCCGGCCGTTTCAGAAGGAGAAAACCGGTAGCGCCGGCCGTGGAGGTGGGGGATCCTCGTCTTCAGCTCCGGCTCCGGCTGCGGAAACGAGCTCGACGACGGAGACGGGGTCAGGCGGAAGTAGCCGACGGGAAGAGAAGGACGCGCAGAATCAGAGGAAACAGAGACGGTGCTGGTCGCCGGAGCTGCACCGGCGGTTCCTTCATGCGCTTCAGCAGCTCGGAGGTTCCCATGTGGCGACGCCGAAGCAAATAAGGGAATTGATGAAGGTGGATGGTCTTACCAACGACGAAGTGAAAAGTCATCTACAGAAGTATCGTCTGCACACGAGACGGCCAACTCCGACGATCCACAACAACGAGAGCGGCCACGCGCCTCAGTTCCTGGTGGTTGGCGGCATATGGGTACCGGCGGCCGAGTACGCCGCCATGTCCACCACCACTTCCTCGGGAGAAGCAGTCAGCGCCGCTACCACAAACGGAATTTATGCACCGGTGGCAGCAGCGGCAGCGCCGCATCCATTACCCAGCACAGTCCAAAAGCCCAAACCCAAGATCCCTTCCTCCGCAGCCGTCGCCGCCGCCGAATCTAATTCTCCGACTACATCTTCCTCTACTCATACGTCTTCAGTTTCACCAGCAGCTTCTTGA 1113 54.45 MVYSDKMQEIASKMGFTLSDFADTLEQERRKVLMFQRELPLCLQLVSHAIDCCRQQLSETTTENRQSECSEQTSSDMGPVLEEFIPINRTGVSDFEQTEKNKNNDDSDLNNLNLAPSDWLRSAQLWNQTSDPPPLNQDQAENTPVVDVNRNGGAFRPFQKEKTGSAGRGGGGSSSSAPAPAAETSSTTETGSGGSSRREEKDAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPTPTIHNNESGHAPQFLVVGGIWVPAAEYAAMSTTTSSGEAVSAATTNGIYAPVAAAAAPHPLPSTVQKPKPKIPSSAAVAAAESNSPTTSSSTHTSSVSPAAS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17115901 17118869 + CcPI632755_08g006470.1 Cco08g0647 185121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0647 370 MobiDBLite consensus disorder prediction 126 146 - -
Cco08g0647 370 MobiDBLite consensus disorder prediction 60 77 - -
Cco08g0647 370 Pfam Myb-like DNA-binding domain 210 261 IPR001005 -
Cco08g0647 370 MobiDBLite consensus disorder prediction 89 114 - -
Cco08g0647 370 MobiDBLite consensus disorder prediction 346 370 - -
Cco08g0647 370 MobiDBLite consensus disorder prediction 126 212 - -
Cco08g0647 370 MobiDBLite consensus disorder prediction 327 370 - -
Cco08g0647 370 Gene3D - 207 265 - -
Cco08g0647 370 MobiDBLite consensus disorder prediction 168 193 - -
Cco08g0647 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
Cco08g0647 370 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 12 342 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0647 370 NCBIfam myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677(InterPro)
Cco08g0647 370 MobiDBLite consensus disorder prediction 194 212 - -
Cco08g0647 370 FunFam Myb family transcription factor 207 265 - -
Cco08g0647 370 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
Cco08g0647 370 MobiDBLite consensus disorder prediction 60 79 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0647 Cco-Chr8:17115901 Cco11g0288 Cco-Chr11:2925412 9.00E-43 dispersed
Cco05g2566 Cco-Chr5:33919454 Cco08g0647 Cco-Chr8:17115901 1.60E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59749 PF00249 Myb_DNA-binding 1.60E-06 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0647 - - - 0.0