Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g0647 | ATGGTTTACTCCGACAAAATGCAAGAAATTGCATCCAAAATGGGTTTCACACTCTCCGATTTCGCCGATACTTTGGAACAAGAACGCCGTAAAGTCCTCATGTTTCAGCGCGAGCTCCCTCTCTGTTTGCAGCTCGTTTCCCATGCCATTGATTGTTGCAGGCAGCAGTTATCGGAGACGACGACGGAAAATCGTCAATCGGAATGCTCCGAGCAGACTTCCAGTGACATGGGTCCGGTTCTTGAGGAGTTCATTCCGATTAACAGAACTGGGGTTTCTGATTTTGAACAAACGGAGAAAAATAAGAATAACGATGACTCTGATTTAAACAATTTGAATTTGGCTCCGTCTGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACTTCAGATCCTCCTCCCCTGAATCAGGACCAGGCAGAGAACACGCCGGTTGTCGACGTCAACAGAAATGGCGGCGCTTTCCGGCCGTTTCAGAAGGAGAAAACCGGTAGCGCCGGCCGTGGAGGTGGGGGATCCTCGTCTTCAGCTCCGGCTCCGGCTGCGGAAACGAGCTCGACGACGGAGACGGGGTCAGGCGGAAGTAGCCGACGGGAAGAGAAGGACGCGCAGAATCAGAGGAAACAGAGACGGTGCTGGTCGCCGGAGCTGCACCGGCGGTTCCTTCATGCGCTTCAGCAGCTCGGAGGTTCCCATGTGGCGACGCCGAAGCAAATAAGGGAATTGATGAAGGTGGATGGTCTTACCAACGACGAAGTGAAAAGTCATCTACAGAAGTATCGTCTGCACACGAGACGGCCAACTCCGACGATCCACAACAACGAGAGCGGCCACGCGCCTCAGTTCCTGGTGGTTGGCGGCATATGGGTACCGGCGGCCGAGTACGCCGCCATGTCCACCACCACTTCCTCGGGAGAAGCAGTCAGCGCCGCTACCACAAACGGAATTTATGCACCGGTGGCAGCAGCGGCAGCGCCGCATCCATTACCCAGCACAGTCCAAAAGCCCAAACCCAAGATCCCTTCCTCCGCAGCCGTCGCCGCCGCCGAATCTAATTCTCCGACTACATCTTCCTCTACTCATACGTCTTCAGTTTCACCAGCAGCTTCTTGA | 1113 | 54.45 | MVYSDKMQEIASKMGFTLSDFADTLEQERRKVLMFQRELPLCLQLVSHAIDCCRQQLSETTTENRQSECSEQTSSDMGPVLEEFIPINRTGVSDFEQTEKNKNNDDSDLNNLNLAPSDWLRSAQLWNQTSDPPPLNQDQAENTPVVDVNRNGGAFRPFQKEKTGSAGRGGGGSSSSAPAPAAETSSTTETGSGGSSRREEKDAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPTPTIHNNESGHAPQFLVVGGIWVPAAEYAAMSTTTSSGEAVSAATTNGIYAPVAAAAAPHPLPSTVQKPKPKIPSSAAVAAAESNSPTTSSSTHTSSVSPAAS | 370 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 17115901 | 17118869 | + | CcPI632755_08g006470.1 | Cco08g0647 | 185121 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g0647 | 370 | MobiDBLite | consensus disorder prediction | 126 | 146 | - | - | |
Cco08g0647 | 370 | MobiDBLite | consensus disorder prediction | 60 | 77 | - | - | |
Cco08g0647 | 370 | Pfam | Myb-like DNA-binding domain | 210 | 261 | IPR001005 | - | |
Cco08g0647 | 370 | MobiDBLite | consensus disorder prediction | 89 | 114 | - | - | |
Cco08g0647 | 370 | MobiDBLite | consensus disorder prediction | 346 | 370 | - | - | |
Cco08g0647 | 370 | MobiDBLite | consensus disorder prediction | 126 | 212 | - | - | |
Cco08g0647 | 370 | MobiDBLite | consensus disorder prediction | 327 | 370 | - | - | |
Cco08g0647 | 370 | Gene3D | - | 207 | 265 | - | - | |
Cco08g0647 | 370 | MobiDBLite | consensus disorder prediction | 168 | 193 | - | - | |
Cco08g0647 | 370 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 205 | 265 | IPR017930 | - | |
Cco08g0647 | 370 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 12 | 342 | IPR044787 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco08g0647 | 370 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 208 | 263 | IPR006447 | GO:0003677(InterPro) | |
Cco08g0647 | 370 | MobiDBLite | consensus disorder prediction | 194 | 212 | - | - | |
Cco08g0647 | 370 | FunFam | Myb family transcription factor | 207 | 265 | - | - | |
Cco08g0647 | 370 | SUPERFAMILY | Homeodomain-like | 206 | 266 | IPR009057 | - | |
Cco08g0647 | 370 | MobiDBLite | consensus disorder prediction | 60 | 79 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco08g0647 | Cco-Chr8:17115901 | Cco11g0288 | Cco-Chr11:2925412 | 9.00E-43 | dispersed | |
Cco05g2566 | Cco-Chr5:33919454 | Cco08g0647 | Cco-Chr8:17115901 | 1.60E-73 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59749 | PF00249 | Myb_DNA-binding | 1.60E-06 | CL0123 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g0647 | - | - | - | 0.0 |