Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0647 ATGGTTTACTCCGACAAAATGCAAGAAATTGCATCCAAAATGGGTTTCACACTCTCCGATTTCGCCGATACTTTGGAACAAGAACGCCGTAAAGTCCTCATGTTTCAGCGCGAGCTCCCTCTCTGTTTGCAGCTCGTTTCCCATGCCATTGATTGTTGCAGGCAGCAGTTATCGGAGACGACGACGGAAAATCGTCAATCGGAATGCTCCGAGCAGACTTCCAGTGACATGGGTCCGGTTCTTGAGGAGTTCATTCCGATTAACAGAACTGGGGTTTCTGATTTTGAACAAACGGAGAAAAATAAGAATAACGATGACTCTGATTTAAACAATTTGAATTTGGCTCCGTCTGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACTTCAGATCCTCCTCCCCTGAATCAGGACCAGGCAGAGAACACGCCGGTTGTCGACGTCAACAGAAATGGCGGCGCTTTCCGGCCGTTTCAGAAGGAGAAAACCGGTAGCGCCGGCCGTGGAGGTGGGGGATCCTCGTCTTCAGCTCCGGCTCCGGCTGCGGAAACGAGCTCGACGACGGAGACGGGGTCAGGCGGAAGTAGCCGACGGGAAGAGAAGGACGCGCAGAATCAGAGGAAACAGAGACGGTGCTGGTCGCCGGAGCTGCACCGGCGGTTCCTTCATGCGCTTCAGCAGCTCGGAGGTTCCCATGTGGCGACGCCGAAGCAAATAAGGGAATTGATGAAGGTGGATGGTCTTACCAACGACGAAGTGAAAAGTCATCTACAGAAGTATCGTCTGCACACGAGACGGCCAACTCCGACGATCCACAACAACGAGAGCGGCCACGCGCCTCAGTTCCTGGTGGTTGGCGGCATATGGGTACCGGCGGCCGAGTACGCCGCCATGTCCACCACCACTTCCTCGGGAGAAGCAGTCAGCGCCGCTACCACAAACGGAATTTATGCACCGGTGGCAGCAGCGGCAGCGCCGCATCCATTACCCAGCACAGTCCAAAAGCCCAAACCCAAGATCCCTTCCTCCGCAGCCGTCGCCGCCGCCGAATCTAATTCTCCGACTACATCTTCCTCTACTCATACGTCTTCAGTTTCACCAGCAGCTTCTTGA 1113 54.45 MVYSDKMQEIASKMGFTLSDFADTLEQERRKVLMFQRELPLCLQLVSHAIDCCRQQLSETTTENRQSECSEQTSSDMGPVLEEFIPINRTGVSDFEQTEKNKNNDDSDLNNLNLAPSDWLRSAQLWNQTSDPPPLNQDQAENTPVVDVNRNGGAFRPFQKEKTGSAGRGGGGSSSSAPAPAAETSSTTETGSGGSSRREEKDAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPTPTIHNNESGHAPQFLVVGGIWVPAAEYAAMSTTTSSGEAVSAATTNGIYAPVAAAAAPHPLPSTVQKPKPKIPSSAAVAAAESNSPTTSSSTHTSSVSPAAS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17115901 17118869 + CcPI632755_08g006470.1 Cco08g0647 185121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0647 370 MobiDBLite consensus disorder prediction 126 146 - -
Cco08g0647 370 MobiDBLite consensus disorder prediction 60 77 - -
Cco08g0647 370 Pfam Myb-like DNA-binding domain 210 261 IPR001005 -
Cco08g0647 370 MobiDBLite consensus disorder prediction 89 114 - -
Cco08g0647 370 MobiDBLite consensus disorder prediction 346 370 - -
Cco08g0647 370 MobiDBLite consensus disorder prediction 126 212 - -
Cco08g0647 370 MobiDBLite consensus disorder prediction 327 370 - -
Cco08g0647 370 Gene3D - 207 265 - -
Cco08g0647 370 MobiDBLite consensus disorder prediction 168 193 - -
Cco08g0647 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
Cco08g0647 370 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 12 342 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0647 370 NCBIfam myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677(InterPro)
Cco08g0647 370 MobiDBLite consensus disorder prediction 194 212 - -
Cco08g0647 370 FunFam Myb family transcription factor 207 265 - -
Cco08g0647 370 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
Cco08g0647 370 MobiDBLite consensus disorder prediction 60 79 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0647 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0647 Cco-Chr8:17115901 Cco11g0288 Cco-Chr11:2925412 9.00E-43 dispersed
Cco05g2566 Cco-Chr5:33919454 Cco08g0647 Cco-Chr8:17115901 1.60E-73 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g0383 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.3e-79 293.5
Cco02g2008 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Cco07g0226 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.8e-40 161.0
Cco09g2488 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Cco04g1886 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Cco05g1222 . 248 448 G2-like Transcription Factor Family AT5G16560 57.3 1.4e-44 177.6
Cco09g1174 . 196 357 G2-like Transcription Factor Family AT5G16560 58.0 4.7e-37 152.5
Cco05g2205 . 1 167 G2-like Transcription Factor Family AT5G42630 58.3 1.5e-40 163.3
Cco08g1731 . 52 138 G2-like Transcription Factor Family AT5G42630 83.9 1.3e-36 150.2
Cco08g0647 . 20 258 G2-like Transcription Factor Family AT1G25550 54.9 8.5e-54 207.6
Cco05g2566 . 19 256 G2-like Transcription Factor Family AT1G25550 55.8 3.2e-53 205.7
Cco05g2566 . 19 352 G2-like Transcription Factor Family AT1G68670 50.6 5.9e-68 255.0
Cco03g0134 . 1 269 G2-like Transcription Factor Family AT3G46640 52.0 6.4e-61 231.5
Cco04g0701 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.2e-74 275.0
Cco10g1632 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 6.9e-69 257.7
Cco05g0383 . 12 315 G2-like Transcription Factor Family AT4G13640 58.0 3.0e-65 245.7
Cco05g0383 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.3e-79 293.5
Cco02g2008 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Cco07g0226 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.8e-40 161.0
Cco09g2488 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Cco04g1886 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Cco11g0984 . 1 228 G2-like Transcription Factor Family AT1G69580 55.6 2.4e-50 196.4
Cco09g2488 . 1 382 G2-like Transcription Factor Family AT1G79430 54.9 3.7e-86 315.5
Cco02g2008 . 1 181 G2-like Transcription Factor Family AT1G79430 85.2 2.8e-73 272.7
Cco05g0383 . 39 203 G2-like Transcription Factor Family AT1G79430 61.2 3.4e-39 159.5
Cco04g1885 . 97 339 G2-like Transcription Factor Family AT2G01060 62.3 5.9e-56 214.5
Cco04g0701 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.2e-91 333.6
Cco10g1632 . 1 283 G2-like Transcription Factor Family AT3G10760 58.4 2.8e-83 305.8
Cco04g0701 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.4e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004323 2 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59749 PF00249 Myb_DNA-binding 1.60E-06 CL0123 Cco TF