Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0650 ATGCAGAGCTTTGAAAACCCAGAACAGTTCTATGCCCATTCTTCTTCTTCTTCTTCAATTTTTCTTCGGGGAGACGACAGTGGGAGATTCCATACGCGTTTTCTTCCTGATATTGAGGAACTTCAACAATCAGCGGCTGCTATTGCTGCTTTTCATCAAGATGATGCTGTTGATTTAAGCCCAAGCTCTGTTTTCAGTTTAAAATCGACCCACAATACAGCTTTTCCAATCCACCTACCGTACGGGAATACGGATGTGGGTTCAATAGGAAGAACAGGGTATTTGGACACAGGACAGGAATTGATGCGGTTGAAGAGGCTGGCTCCGCCGCAGTCGGTGGCGGTGACGGTGGCAGCTTCGTCATCGTTGGGAAACGGGAGCTTTGAGAATTGGGGAGAGTCAGCCATGGCAGATAATAGCCAGCAGACTGACACTTCCACAGACATCGACACTGATGAAAGAAACCAGTTTCAAGGAGCTGCACATGGAGCTCTCATGGCGGTGGACTCCATGGATCAATCTAAACCAAAATCTGCAGATCAGAAGACTCTTCGTAGACTTGCTCAGAATCGAGAAGCAGCCAGGAAGAGTCGACTGAGGAAGAAAGCATATGTCCAGCAGCTGGAAAATAGTCGACAGAGGCTTGCACAGCTAGAGCAGGAGCTTCATCGAGCACGCCAACAGGGCATTTTTGTGGCTTCCGGGGCAGGAGATCATTGTGCATCAATGGCAGGAAATGGTGCATTGGCATTTGATCTCGACTATGCACGTTGGCTTGACGAGCATCAACGGCTGATCAATGATTTGAGAGCATCTGCAAATTCTCAGTTGGGGGACGACGAATTGAGATTTCTTGTTGATGGGGTGATGGCACATTATGACGAACTCTTCAAGCTGAAAAGTGTAGGTGCTAAGGCCGACGTATTCCACATTCTTTCAGGCATGTGGAAGACTCCTGCTGAGAGGTGTTTCATGTGGCTGGGAGGATTCCGTTCATCCGAGCTCCTAAAGATAGTAGGGAGCCATTTGGAGCCTCTAACAGATCAGCAGTTGATGGGTATCTGCAATTTGCAACAATCCTCCCAACAAGCTGAAGATGCATTGTCGCAAGGAATTGAAGCTTTGCAACAATCTCTTGTAGAAACTCTTTCCACTGCTTCTTTAGGTCCAGCCAGTTCAGGAAATGTTGCTGATTACATGGGCCAAATGGCGATCGCGATGAGCAAGCTAACAACGCTTGAGAACTTTCTACATCAGGCGGATCTTCTGAGGCAGCAAACACTCCAACAGATGCATCGGATATTAACTACTCGTCAAGCTGCACGAGCGCTTCTTGTGATCAGCGATTACATTTCACGTCTTCGAGCTCTCAGTTCTCTGTGGTTAGCACGACCGAGAGACTGA 1404 47.86 MQSFENPEQFYAHSSSSSSIFLRGDDSGRFHTRFLPDIEELQQSAAAIAAFHQDDAVDLSPSSVFSLKSTHNTAFPIHLPYGNTDVGSIGRTGYLDTGQELMRLKRLAPPQSVAVTVAASSSLGNGSFENWGESAMADNSQQTDTSTDIDTDERNQFQGAAHGALMAVDSMDQSKPKSADQKTLRRLAQNREAARKSRLRKKAYVQQLENSRQRLAQLEQELHRARQQGIFVASGAGDHCASMAGNGALAFDLDYARWLDEHQRLINDLRASANSQLGDDELRFLVDGVMAHYDELFKLKSVGAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKIVGSHLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETLSTASLGPASSGNVADYMGQMAIAMSKLTTLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYISRLRALSSLWLARPRD 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17230048 17232781 + CcPI632755_08g006500.1 Cco08g0650 185124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0650 467 Gene3D - 181 230 - -
Cco08g0650 467 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 180 224 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0650 467 FunFam BZIP family transcription factor 181 230 - -
Cco08g0650 467 Pfam Seed dormancy control 266 339 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cco08g0650 467 ProSiteProfiles DOG1 domain profile. 248 464 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cco08g0650 467 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 185 200 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0650 467 SMART brlzneu 178 249 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0650 467 Pfam bZIP transcription factor 181 221 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0650 467 Coils Coil 201 228 - -
Cco08g0650 467 SUPERFAMILY Leucine zipper domain 182 225 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0650 467 PANTHER TRANSCRIPTION FACTOR TGA9 138 467 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0650 K14431 - - csv:101210308 837.795
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0650 Cco-Chr8:17230048 Cco10g1614 Cco-Chr10:29507372 2.00E-119 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g0134 . 1 344 bZIP Transcription Factor Family AT2G35530 67.9 8.8e-108 387.5
Cco09g1167 . 1 344 bZIP Transcription Factor Family AT2G35530 61.4 5.5e-102 368.2
Cco07g0536 . 4 324 bZIP Transcription Factor Family AT2G40620 57.1 8.0e-84 307.8
Cco02g2034 . 59 388 bZIP Transcription Factor Family AT2G40620 50.6 1.9e-69 260.0
Cco02g0487 . 395 519 bZIP Transcription Factor Family AT2G40620 70.4 6.6e-38 155.2
Cco02g0489 . 382 518 bZIP Transcription Factor Family AT2G40620 66.4 1.9e-37 153.7
Cco02g1296 . 1 262 bZIP Transcription Factor Family AT4G35040 58.0 3.5e-65 245.4
Cco02g0453 . 4 247 bZIP Transcription Factor Family AT4G35040 56.9 5.2e-53 204.9
Cco08g1226 . 6 333 bZIP Transcription Factor Family AT5G06950 80.7 1.2e-139 493.0
Cco05g2958 . 19 349 bZIP Transcription Factor Family AT5G06950 76.7 1.9e-132 469.2
Cco10g1614 . 176 507 bZIP Transcription Factor Family AT5G06950 73.2 3.9e-122 434.9
Cco08g0650 . 136 467 bZIP Transcription Factor Family AT5G06950 69.9 3.4e-118 421.8
Cco10g1716 . 217 510 bZIP Transcription Factor Family AT5G06950 60.8 2.7e-91 332.4
Cco01g1350 . 169 452 bZIP Transcription Factor Family AT5G06950 58.2 1.5e-86 316.6
Cco02g2371 . 220 498 bZIP Transcription Factor Family AT5G06950 55.8 1.0e-82 303.9
Cco07g1009 . 78 360 bZIP Transcription Factor Family AT5G06950 54.3 7.9e-75 277.7
Cco11g0792 . 98 390 bZIP Transcription Factor Family AT5G06950 51.5 1.6e-70 263.5
Cco01g1350 . 128 481 bZIP Transcription Factor Family AT1G08320 68.1 5.5e-130 461.1
Cco02g2371 . 214 498 bZIP Transcription Factor Family AT1G08320 70.9 6.7e-112 401.0
Cco08g1226 . 46 333 bZIP Transcription Factor Family AT1G08320 63.2 4.2e-98 355.1
Cco10g1716 . 194 510 bZIP Transcription Factor Family AT1G08320 58.7 5.7e-95 344.7
Cco05g2958 . 62 349 bZIP Transcription Factor Family AT1G08320 61.5 4.8e-94 341.7
Cco10g1614 . 217 507 bZIP Transcription Factor Family AT1G08320 60.1 4.5e-92 335.1
Cco08g0650 . 177 467 bZIP Transcription Factor Family AT1G08320 58.8 7.2e-90 327.8
Cco02g1296 . 1 261 bZIP Transcription Factor Family AT2G16770 60.3 2.3e-66 249.2
Cco02g0453 . 2 247 bZIP Transcription Factor Family AT2G16770 57.1 4.3e-57 218.4
Cco08g1226 . 25 333 bZIP Transcription Factor Family AT5G06960 80.9 3.1e-129 458.4
Cco05g2958 . 39 349 bZIP Transcription Factor Family AT5G06960 74.6 2.2e-119 425.6
Cco10g1614 . 197 507 bZIP Transcription Factor Family AT5G06960 70.5 9.3e-110 393.7
Cco08g0650 . 162 467 bZIP Transcription Factor Family AT5G06960 68.0 6.3e-106 380.9
Cco10g1716 . 203 510 bZIP Transcription Factor Family AT5G06960 60.1 1.8e-89 326.2
Cco01g1350 . 164 452 bZIP Transcription Factor Family AT5G06960 56.3 5.7e-83 304.7
Cco02g2371 . 216 498 bZIP Transcription Factor Family AT5G06960 54.8 1.2e-80 297.0
Cco07g1009 . 53 360 bZIP Transcription Factor Family AT5G06960 51.6 7.0e-73 271.2
Cco02g0489 . 1 512 bZIP Transcription Factor Family AT4G38900 59.7 1.4e-132 470.3
Cco02g0487 . 1 517 bZIP Transcription Factor Family AT4G38900 59.9 1.8e-132 469.9
Cco08g0830 . 96 280 bZIP Transcription Factor Family AT4G38900 55.2 8.9e-39 158.7
Cco09g0965 . 101 282 bZIP Transcription Factor Family AT4G38900 55.9 5.8e-38 156.0
Cco07g0536 . 123 237 bZIP Transcription Factor Family AT4G38900 76.5 8.3e-37 152.1
Cco05g0860 . 207 330 bZIP Transcription Factor Family AT4G38900 70.2 1.1e-36 151.8
Cco02g0489 . 2 534 bZIP Transcription Factor Family AT2G21230 51.4 1.6e-101 367.1
Cco02g0487 . 64 535 bZIP Transcription Factor Family AT2G21230 53.9 4.3e-99 359.0
Cco09g0965 . 101 282 bZIP Transcription Factor Family AT2G21230 56.8 3.2e-38 156.8
Cco02g0233 . 1 252 bZIP Transcription Factor Family AT2G42380 56.4 2.6e-55 212.6
Cco08g1784 . 6 353 bZIP Transcription Factor Family AT1G45249 54.8 5.6e-86 315.1
Cco08g1226 . 6 333 bZIP Transcription Factor Family AT3G12250 80.8 1.2e-139 493.0
Cco05g2958 . 19 349 bZIP Transcription Factor Family AT3G12250 76.1 6.0e-131 464.2
Cco10g1614 . 176 507 bZIP Transcription Factor Family AT3G12250 73.7 5.1e-122 434.5
Cco08g0650 . 136 467 bZIP Transcription Factor Family AT3G12250 69.0 3.8e-117 418.3
Cco10g1716 . 217 510 bZIP Transcription Factor Family AT3G12250 60.1 3.0e-90 328.9
Cco01g1350 . 169 452 bZIP Transcription Factor Family AT3G12250 57.9 1.4e-84 310.1
Cco02g2371 . 220 498 bZIP Transcription Factor Family AT3G12250 56.5 3.6e-83 305.4
Cco07g1009 . 47 360 bZIP Transcription Factor Family AT3G12250 51.8 4.7e-75 278.5
Cco08g0650 . 16 467 bZIP Transcription Factor Family AT1G68640 62.5 1.4e-143 506.5
Cco08g1226 . 6 333 bZIP Transcription Factor Family AT1G68640 67.4 2.2e-115 412.9
Cco10g1614 . 174 507 bZIP Transcription Factor Family AT1G68640 65.9 1.5e-111 400.2
Cco05g2958 . 16 349 bZIP Transcription Factor Family AT1G68640 64.4 2.7e-110 396.0
Cco10g1716 . 205 510 bZIP Transcription Factor Family AT1G68640 55.5 7.3e-87 318.2
Cco01g1350 . 174 452 bZIP Transcription Factor Family AT1G68640 56.7 1.2e-84 310.8
Cco02g2371 . 194 498 bZIP Transcription Factor Family AT1G68640 52.6 8.6e-80 294.7
Cco08g0830 . 9 319 bZIP Transcription Factor Family AT1G43700 53.7 2.5e-63 239.6
Cco09g0965 . 14 293 bZIP Transcription Factor Family AT1G43700 52.5 8.0e-62 234.6
Cco05g0135 . 11 416 bZIP Transcription Factor Family AT2G46270 50.6 4.0e-80 295.4
Cco05g0860 . 42 370 bZIP Transcription Factor Family AT2G31370 71.3 1.8e-113 406.4
Cco05g0863 . 43 362 bZIP Transcription Factor Family AT2G31370 67.5 8.9e-105 377.5
Cco07g0536 . 25 248 bZIP Transcription Factor Family AT2G31370 51.0 1.7e-47 187.2
Cco02g0233 . 1 252 bZIP Transcription Factor Family AT3G58120 54.5 3.4e-50 195.7
Cco08g0999 . 12 316 bZIP Transcription Factor Family AT3G56850 56.5 6.3e-71 264.6
Cco10g0134 . 36 346 bZIP Transcription Factor Family AT1G32150 65.3 1.8e-97 353.2
Cco09g1167 . 1 344 bZIP Transcription Factor Family AT1G32150 62.0 3.7e-95 345.5
Cco05g0860 . 10 365 bZIP Transcription Factor Family AT1G06070 70.0 2.8e-125 445.7
Cco05g0863 . 1 357 bZIP Transcription Factor Family AT1G06070 68.2 2.6e-118 422.5
Cco09g0965 . 138 282 bZIP Transcription Factor Family AT1G06070 65.3 1.5e-41 167.5
Cco02g0489 . 382 514 bZIP Transcription Factor Family AT1G06070 67.4 5.8e-38 155.6
Cco02g0487 . 383 527 bZIP Transcription Factor Family AT1G06070 63.9 1.0e-37 154.8
Cco08g1784 . 6 353 bZIP Transcription Factor Family AT1G45249 54.8 5.6e-86 315.1
Cco10g0134 . 1 344 bZIP Transcription Factor Family AT2G35530 67.9 8.8e-108 387.5
Cco09g1167 . 1 344 bZIP Transcription Factor Family AT2G35530 61.4 5.5e-102 368.2
Cco07g0536 . 4 324 bZIP Transcription Factor Family AT2G40620 57.1 8.0e-84 307.8
Cco02g2034 . 59 388 bZIP Transcription Factor Family AT2G40620 50.6 1.9e-69 260.0
Cco02g0487 . 395 519 bZIP Transcription Factor Family AT2G40620 70.4 6.6e-38 155.2
Cco02g0489 . 382 518 bZIP Transcription Factor Family AT2G40620 66.4 1.9e-37 153.7
Cco02g1296 . 1 262 bZIP Transcription Factor Family AT4G35040 58.0 3.5e-65 245.4
Cco02g0453 . 4 247 bZIP Transcription Factor Family AT4G35040 56.9 5.2e-53 204.9
Cco08g1226 . 6 333 bZIP Transcription Factor Family AT5G06950 80.7 1.2e-139 493.0
Cco05g2958 . 19 349 bZIP Transcription Factor Family AT5G06950 76.7 1.9e-132 469.2
Cco10g1614 . 176 507 bZIP Transcription Factor Family AT5G06950 73.2 3.9e-122 434.9
Cco08g0650 . 136 467 bZIP Transcription Factor Family AT5G06950 69.9 3.4e-118 421.8
Cco10g1716 . 217 510 bZIP Transcription Factor Family AT5G06950 60.8 2.7e-91 332.4
Cco01g1350 . 169 452 bZIP Transcription Factor Family AT5G06950 58.2 1.5e-86 316.6
Cco02g2371 . 220 498 bZIP Transcription Factor Family AT5G06950 55.8 1.0e-82 303.9
Cco07g1009 . 78 360 bZIP Transcription Factor Family AT5G06950 54.3 7.9e-75 277.7
Cco11g0792 . 98 390 bZIP Transcription Factor Family AT5G06950 51.5 1.6e-70 263.5
Cco01g1350 . 128 481 bZIP Transcription Factor Family AT1G08320 68.1 5.5e-130 461.1
Cco02g2371 . 214 498 bZIP Transcription Factor Family AT1G08320 70.9 6.7e-112 401.0
Cco08g1226 . 46 333 bZIP Transcription Factor Family AT1G08320 63.2 4.2e-98 355.1
Cco10g1716 . 194 510 bZIP Transcription Factor Family AT1G08320 58.7 5.7e-95 344.7
Cco05g2958 . 62 349 bZIP Transcription Factor Family AT1G08320 61.5 4.8e-94 341.7
Cco10g1614 . 217 507 bZIP Transcription Factor Family AT1G08320 60.1 4.5e-92 335.1
Cco08g0650 . 177 467 bZIP Transcription Factor Family AT1G08320 58.8 7.2e-90 327.8
Cco02g1296 . 1 261 bZIP Transcription Factor Family AT2G16770 60.3 2.3e-66 249.2
Cco02g0453 . 2 247 bZIP Transcription Factor Family AT2G16770 57.1 4.3e-57 218.4
Cco08g1226 . 25 333 bZIP Transcription Factor Family AT5G06960 80.9 3.1e-129 458.4
Cco05g2958 . 39 349 bZIP Transcription Factor Family AT5G06960 74.6 2.2e-119 425.6
Cco10g1614 . 197 507 bZIP Transcription Factor Family AT5G06960 70.5 9.3e-110 393.7
Cco08g0650 . 162 467 bZIP Transcription Factor Family AT5G06960 68.0 6.3e-106 380.9
Cco10g1716 . 203 510 bZIP Transcription Factor Family AT5G06960 60.1 1.8e-89 326.2
Cco01g1350 . 164 452 bZIP Transcription Factor Family AT5G06960 56.3 5.7e-83 304.7
Cco02g2371 . 216 498 bZIP Transcription Factor Family AT5G06960 54.8 1.2e-80 297.0
Cco07g1009 . 53 360 bZIP Transcription Factor Family AT5G06960 51.6 7.0e-73 271.2
Cco02g0489 . 1 512 bZIP Transcription Factor Family AT4G38900 59.7 1.4e-132 470.3
Cco02g0487 . 1 517 bZIP Transcription Factor Family AT4G38900 59.9 1.8e-132 469.9
Cco08g0830 . 96 280 bZIP Transcription Factor Family AT4G38900 55.2 8.9e-39 158.7
Cco09g0965 . 101 282 bZIP Transcription Factor Family AT4G38900 55.9 5.8e-38 156.0
Cco07g0536 . 123 237 bZIP Transcription Factor Family AT4G38900 76.5 8.3e-37 152.1
Cco05g0860 . 207 330 bZIP Transcription Factor Family AT4G38900 70.2 1.1e-36 151.8
Cco02g0489 . 2 534 bZIP Transcription Factor Family AT2G21230 51.4 1.6e-101 367.1
Cco02g0487 . 64 535 bZIP Transcription Factor Family AT2G21230 53.9 4.3e-99 359.0
Cco09g0965 . 101 282 bZIP Transcription Factor Family AT2G21230 56.8 3.2e-38 156.8
Cco02g0233 . 1 252 bZIP Transcription Factor Family AT2G42380 56.4 2.6e-55 212.6
Cco08g1226 . 6 333 bZIP Transcription Factor Family AT3G12250 80.8 1.2e-139 493.0
Cco05g2958 . 19 349 bZIP Transcription Factor Family AT3G12250 76.1 6.0e-131 464.2
Cco10g1614 . 176 507 bZIP Transcription Factor Family AT3G12250 73.7 5.1e-122 434.5
Cco08g0650 . 136 467 bZIP Transcription Factor Family AT3G12250 69.0 3.8e-117 418.3
Cco10g1716 . 217 510 bZIP Transcription Factor Family AT3G12250 60.1 3.0e-90 328.9
Cco01g1350 . 169 452 bZIP Transcription Factor Family AT3G12250 57.9 1.4e-84 310.1
Cco02g2371 . 220 498 bZIP Transcription Factor Family AT3G12250 56.5 3.6e-83 305.4
Cco07g1009 . 47 360 bZIP Transcription Factor Family AT3G12250 51.8 4.7e-75 278.5
Cco08g0650 . 16 467 bZIP Transcription Factor Family AT1G68640 62.5 1.4e-143 506.5
Cco08g1226 . 6 333 bZIP Transcription Factor Family AT1G68640 67.4 2.2e-115 412.9
Cco10g1614 . 174 507 bZIP Transcription Factor Family AT1G68640 65.9 1.5e-111 400.2
Cco05g2958 . 16 349 bZIP Transcription Factor Family AT1G68640 64.4 2.7e-110 396.0
Cco10g1716 . 205 510 bZIP Transcription Factor Family AT1G68640 55.5 7.3e-87 318.2
Cco01g1350 . 174 452 bZIP Transcription Factor Family AT1G68640 56.7 1.2e-84 310.8
Cco02g2371 . 194 498 bZIP Transcription Factor Family AT1G68640 52.6 8.6e-80 294.7
Cco08g0830 . 9 319 bZIP Transcription Factor Family AT1G43700 53.7 2.5e-63 239.6
Cco09g0965 . 14 293 bZIP Transcription Factor Family AT1G43700 52.5 8.0e-62 234.6
Cco05g0135 . 11 416 bZIP Transcription Factor Family AT2G46270 50.6 4.0e-80 295.4
Cco05g0860 . 42 370 bZIP Transcription Factor Family AT2G31370 71.3 1.8e-113 406.4
Cco05g0863 . 43 362 bZIP Transcription Factor Family AT2G31370 67.5 8.9e-105 377.5
Cco07g0536 . 25 248 bZIP Transcription Factor Family AT2G31370 51.0 1.7e-47 187.2
Cco02g0233 . 1 252 bZIP Transcription Factor Family AT3G58120 54.5 3.4e-50 195.7
Cco08g0999 . 12 316 bZIP Transcription Factor Family AT3G56850 56.5 6.3e-71 264.6
Cco10g0134 . 36 346 bZIP Transcription Factor Family AT1G32150 65.3 1.8e-97 353.2
Cco09g1167 . 1 344 bZIP Transcription Factor Family AT1G32150 62.0 3.7e-95 345.5
Cco05g0860 . 10 365 bZIP Transcription Factor Family AT1G06070 70.0 2.8e-125 445.7
Cco05g0863 . 1 357 bZIP Transcription Factor Family AT1G06070 68.2 2.6e-118 422.5
Cco09g0965 . 138 282 bZIP Transcription Factor Family AT1G06070 65.3 1.5e-41 167.5
Cco02g0489 . 382 514 bZIP Transcription Factor Family AT1G06070 67.4 5.8e-38 155.6
Cco02g0487 . 383 527 bZIP Transcription Factor Family AT1G06070 63.9 1.0e-37 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005530 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 4 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59750 PF14144 DOG1 1.80E-29 No_clan Cco TF