Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0650 ATGCAGAGCTTTGAAAACCCAGAACAGTTCTATGCCCATTCTTCTTCTTCTTCTTCAATTTTTCTTCGGGGAGACGACAGTGGGAGATTCCATACGCGTTTTCTTCCTGATATTGAGGAACTTCAACAATCAGCGGCTGCTATTGCTGCTTTTCATCAAGATGATGCTGTTGATTTAAGCCCAAGCTCTGTTTTCAGTTTAAAATCGACCCACAATACAGCTTTTCCAATCCACCTACCGTACGGGAATACGGATGTGGGTTCAATAGGAAGAACAGGGTATTTGGACACAGGACAGGAATTGATGCGGTTGAAGAGGCTGGCTCCGCCGCAGTCGGTGGCGGTGACGGTGGCAGCTTCGTCATCGTTGGGAAACGGGAGCTTTGAGAATTGGGGAGAGTCAGCCATGGCAGATAATAGCCAGCAGACTGACACTTCCACAGACATCGACACTGATGAAAGAAACCAGTTTCAAGGAGCTGCACATGGAGCTCTCATGGCGGTGGACTCCATGGATCAATCTAAACCAAAATCTGCAGATCAGAAGACTCTTCGTAGACTTGCTCAGAATCGAGAAGCAGCCAGGAAGAGTCGACTGAGGAAGAAAGCATATGTCCAGCAGCTGGAAAATAGTCGACAGAGGCTTGCACAGCTAGAGCAGGAGCTTCATCGAGCACGCCAACAGGGCATTTTTGTGGCTTCCGGGGCAGGAGATCATTGTGCATCAATGGCAGGAAATGGTGCATTGGCATTTGATCTCGACTATGCACGTTGGCTTGACGAGCATCAACGGCTGATCAATGATTTGAGAGCATCTGCAAATTCTCAGTTGGGGGACGACGAATTGAGATTTCTTGTTGATGGGGTGATGGCACATTATGACGAACTCTTCAAGCTGAAAAGTGTAGGTGCTAAGGCCGACGTATTCCACATTCTTTCAGGCATGTGGAAGACTCCTGCTGAGAGGTGTTTCATGTGGCTGGGAGGATTCCGTTCATCCGAGCTCCTAAAGATAGTAGGGAGCCATTTGGAGCCTCTAACAGATCAGCAGTTGATGGGTATCTGCAATTTGCAACAATCCTCCCAACAAGCTGAAGATGCATTGTCGCAAGGAATTGAAGCTTTGCAACAATCTCTTGTAGAAACTCTTTCCACTGCTTCTTTAGGTCCAGCCAGTTCAGGAAATGTTGCTGATTACATGGGCCAAATGGCGATCGCGATGAGCAAGCTAACAACGCTTGAGAACTTTCTACATCAGGCGGATCTTCTGAGGCAGCAAACACTCCAACAGATGCATCGGATATTAACTACTCGTCAAGCTGCACGAGCGCTTCTTGTGATCAGCGATTACATTTCACGTCTTCGAGCTCTCAGTTCTCTGTGGTTAGCACGACCGAGAGACTGA 1404 47.86 MQSFENPEQFYAHSSSSSSIFLRGDDSGRFHTRFLPDIEELQQSAAAIAAFHQDDAVDLSPSSVFSLKSTHNTAFPIHLPYGNTDVGSIGRTGYLDTGQELMRLKRLAPPQSVAVTVAASSSLGNGSFENWGESAMADNSQQTDTSTDIDTDERNQFQGAAHGALMAVDSMDQSKPKSADQKTLRRLAQNREAARKSRLRKKAYVQQLENSRQRLAQLEQELHRARQQGIFVASGAGDHCASMAGNGALAFDLDYARWLDEHQRLINDLRASANSQLGDDELRFLVDGVMAHYDELFKLKSVGAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKIVGSHLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETLSTASLGPASSGNVADYMGQMAIAMSKLTTLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYISRLRALSSLWLARPRD 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17230048 17232781 + CcPI632755_08g006500.1 Cco08g0650 185124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0650 467 Gene3D - 181 230 - -
Cco08g0650 467 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 180 224 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0650 467 FunFam BZIP family transcription factor 181 230 - -
Cco08g0650 467 Pfam Seed dormancy control 266 339 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cco08g0650 467 ProSiteProfiles DOG1 domain profile. 248 464 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cco08g0650 467 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 185 200 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0650 467 SMART brlzneu 178 249 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0650 467 Pfam bZIP transcription factor 181 221 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0650 467 Coils Coil 201 228 - -
Cco08g0650 467 SUPERFAMILY Leucine zipper domain 182 225 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0650 467 PANTHER TRANSCRIPTION FACTOR TGA9 138 467 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0650 Cco-Chr8:17230048 Cco10g1614 Cco-Chr10:29507372 2.00E-119 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59750 PF14144 DOG1 1.80E-29 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0650 K14431 - csv:101210308 837.795