Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0683 ATGTTTGCGCTTGCTGTTCCCTACCATCATTGGACCGGGAACCATTTGGGGTTTGTTGTTATGTATGGCCTTACTTTTTTCTTTGCTAATTTTGGTCCTAATAGTACTACCTTTGTTGTCCCTGCTGAGATTTTTCCGGCCCGGTTCCGGTCCACTTGTCATGGGATATCGGCTGCAGCTGGGAAAGCCGGGGCTATCCTTGGAGCTTTTGGGTTCTTGTATGCGGCTCAGAGTCAGGACCCGACAAAGACCGATGCCGGTTACCCGCCCGGGATTGGAATGAGGAATTCTTTGATCATTTTGGGAGTTGTTAATGTGTTCAGATTGCTTTTTACTTTTTTGGTTCCGGAATCTAAAGGGAAGTCTTTGGAAGAAATGTCGAAGGAGAATCAAGTTGAAGAAGAAGAACATGAAGAAAGTAAAGAGCAAGTTAATGGAGTTGAACAGATATCAAGCACTTATGAGCCCTCACCTCACACCGAAGCCCTTAACGTCAAAACCCTCAACGCCGAAGCCCTCACTTCATCGTGTTCAGCCACTTCAACCACCGTCACAGTCCCTGTTGTTTCTGTCGCTTCCATCAATCATCGTTGCTTTCATTCATCGCTGTCGTTGCTTCCGCCGTTGTTTTCAGCCGAAGGAAGCAAGATGACTCCAAACGATTCTTCACTTCTAAACCCTAGACGAACTTCTACGGCTTTCAACTTCTTTCCAAATTGGATATCCCCATTCTCACCCTCATTTTCTTAA 750 45.87 MFALAVPYHHWTGNHLGFVVMYGLTFFFANFGPNSTTFVVPAEIFPARFRSTCHGISAAAGKAGAILGAFGFLYAAQSQDPTKTDAGYPPGIGMRNSLIILGVVNVFRLLFTFLVPESKGKSLEEMSKENQVEEEEHEESKEQVNGVEQISSTYEPSPHTEALNVKTLNAEALTSSCSATSTTVTVPVVSVASINHRCFHSSLSLLPPLFSAEGSKMTPNDSSLLNPRRTSTAFNFFPNWISPFSPSFS 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18150366 18154942 - CcPI632755_08g006830.1 Cco08g0683 185157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0683 249 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 120 IPR020846 GO:0022857(InterPro)
Cco08g0683 249 Pfam Sugar (and other) transporter 12 128 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cco08g0683 249 MobiDBLite consensus disorder prediction 123 147 - -
Cco08g0683 249 Coils Coil 123 150 - -
Cco08g0683 249 Gene3D MFS general substrate transporter like domains 1 144 IPR036259 -
Cco08g0683 249 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 18 128 - -
Cco08g0683 249 MobiDBLite consensus disorder prediction 123 144 - -
Cco08g0683 249 SUPERFAMILY MFS general substrate transporter 8 129 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0683 Cco-Chr8:18150366 Cco11g1953 Cco-Chr11:32071316 7.20E-28 dispersed
Cco08g0683 Cco-Chr8:18150366 Cco07g0102 Cco-Chr7:1049884 6.90E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0683 K08176 - csv:101205342 228.794