Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0685 ATGGCCAATGACCAGCTCCAGCTTCTGACTGTCCTTGATCGTGCAAAGACCCAATTCTACCATTTCACGGCGGTGGTAATCGCCGGAATGGGCTTCTTCACCGATTCCTACGACCTCTTCTGCATCTCTCTCGTCACAAAACTCCTCGGCCGCATTTACTACACCGTAGAAGGCTCCCCCCGTCCCGGAACCCTCCCTCCCGCCGTCGCCGCCGCCGTCAACGGCGTCGCCCTCGCCGGCACTCTCGTCGGTCAACTCTTCTTCGGCTGGCTCGGCGACAAGCTCGGCCGGAAGCGCGTCTATGGCCTCACCCTCATCCTCATGGTCGTCTGTTCCATCGCCTCCGGTCTCTCCTTCAGCAGCTCTCCGACCGCCGTCATCACCACTCTCTGTTTCTTCCGATTCTGGCTTGGCTTCGGAATCGGCGGCGACTACCCTTTATCCGCTACCATCATGGCCGAATACTCCAACAAAAAAACCCGAGGCGCCTTCGTAGCCGCCGTCTTCGCAATGCAGGGATTTGGAATTCTGGCCGGCGGCACGGTAGTAATTGTAATCTCGTCAATTTTCAAGACCCTTTTTAAAGCTCCACCGTAA 597 57.45 MANDQLQLLTVLDRAKTQFYHFTAVVIAGMGFFTDSYDLFCISLVTKLLGRIYYTVEGSPRPGTLPPAVAAAVNGVALAGTLVGQLFFGWLGDKLGRKRVYGLTLILMVVCSIASGLSFSSSPTAVITTLCFFRFWLGFGIGGDYPLSATIMAEYSNKKTRGAFVAAVFAMQGFGILAGGTVVIVISSIFKTLFKAPP 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18155511 18156107 - CcPI632755_08g006850.1 Cco08g0685 185159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0685 198 Pfam Sugar (and other) transporter 26 191 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cco08g0685 198 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 15 188 - -
Cco08g0685 198 ProSiteProfiles Major facilitator superfamily (MFS) profile. 24 198 IPR020846 GO:0022857(InterPro)
Cco08g0685 198 SUPERFAMILY MFS general substrate transporter 12 189 IPR036259 -
Cco08g0685 198 Gene3D MFS general substrate transporter like domains 20 198 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0102 Cco-Chr7:1049884 Cco08g0685 Cco-Chr8:18155511 2.10E-88 dispersed
Cco08g0685 Cco-Chr8:18155511 Cco11g1953 Cco-Chr11:32071316 1.70E-56 dispersed
Cco08g0685 Cco-Chr8:18155511 Cco06g0725 Cco-Chr6:8259503 6.40E-88 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0685 K08176 - csv:101205342 365.54