Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0692 ATGAAGTTTCTCATATTGCTCTCCCTTTTATTATCACTTCTCACTAAGCTAAAGATCAAGATGGGTGAGAATTCTATTGTGAGTAAGTTGAAGCCTTATATTCTAGTGGTGAGCCTACAATTTGGAATTGCAGGCATATATGTCATATGCATGGCCACTCTCACCAAAGGCATGAGTCGTTATGTCTTGATCGTGTATCGAAACACTGTTGCTGCTCTCTTTCTCGCTCCGTTCGCACTAATCTTCGAAAGGAAAACAAGACCAAAGATGACACTCCCTGTCGCTTTACAAATCATGGTCTTAGGTTTTCTAGAACCAGTTGTGGATCAAGGGTTTGGTTATCTAGGAATGATGTACACGTCAGCATCATTTGCATCGGCCATCATGAACGCTGTGCCTTCTGTTACCTTTATCATTGCAGTCATTTTTCGGGTGGAGCATCTGAATATAAAACAAGTACGAGGGGTAGCCAAGGTAATTGGCACTTTAGTGACCTTTGCTGGAGCTTTGGTTATGACACTTTACAAAGGTCCAATTCTTGAATTCTTTTGGACACAAAAAACCAACCACCATGTTAACAGCGGCGCCGCCGCAGCCAATCAGCACTGGGTGGCCGGAACTTTGTTCATCCTTCTGGGCTGCGTGTCTTGGTCTTGTTTCTACATATTACAATCTATAACAGTGAAGAGATACCCAGCGGAGCTGTCTCTGTCGGCATTGATATGCTTGGCCGGTGCACTTCAAAGCACAGTGATAGCAGTAGCTATAGAGCATCGTCCTAGCGCATGGGCTGTGGGTTGGGACTCTAGGCTTCTAGCTCCTCTCTATACGGGAATAGTTGGATCAGGAATTGCATATTACTTTCAAGCTATAGTTATGAAGACAAGAGGTCCTGTATTTGTGACGGCTTTCAACCCTTTATGTATGATTGTCGTCACTATTATCTCCTCTATTGTTCTCGCCGAGAAGATTCATCTTGGAAGCGTGATTGGAGCCATTATCATCGCAATTGGGCTTTATTCAGTCGTTTGGGGAAAAAGCAAGGATTGTTCCACTGCCGGCAACACCCAAAAGCCTAACGCCGCCGTGTCGGAGCTTCCAATTACTGCCTCTCAACTCCCAACCGAACAAGGTGTTCATCTTCAACCTCCAAAATGA 1158 44.56 MKFLILLSLLLSLLTKLKIKMGENSIVSKLKPYILVVSLQFGIAGIYVICMATLTKGMSRYVLIVYRNTVAALFLAPFALIFERKTRPKMTLPVALQIMVLGFLEPVVDQGFGYLGMMYTSASFASAIMNAVPSVTFIIAVIFRVEHLNIKQVRGVAKVIGTLVTFAGALVMTLYKGPILEFFWTQKTNHHVNSGAAAANQHWVAGTLFILLGCVSWSCFYILQSITVKRYPAELSLSALICLAGALQSTVIAVAIEHRPSAWAVGWDSRLLAPLYTGIVGSGIAYYFQAIVMKTRGPVFVTAFNPLCMIVVTIISSIVLAEKIHLGSVIGAIIIAIGLYSVVWGKSKDCSTAGNTQKPNAAVSELPITASQLPTEQGVHLQPPK 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18357870 18364839 + CcPI632755_08g006920.1 Cco08g0692 185166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0692 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 263 347 - -
Cco08g0692 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 66 175 - -
Cco08g0692 385 PANTHER WAT1-RELATED PROTEIN 34 355 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cco08g0692 385 Pfam EamA-like transporter family 206 343 IPR000620 GO:0016020(InterPro)
Cco08g0692 385 Pfam EamA-like transporter family 42 161 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0692 Cco-Chr8:18357870 Cco10g1627 Cco-Chr10:29623308 4.40E-93 dispersed
Cco11g1620 Cco-Chr11:29020257 Cco08g0692 Cco-Chr8:18357870 2.30E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0692 - - - 0.0