Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0713 ATGAAAGTGGTGGTCCTATCAGCTTCGATTCGACGCCCTCTCTCACCTCACCGTCCCTACACATCATATTCTACCACGTGCGCCAAATTCGCCTGCCTCTTTTTCCCTAACCTCTTTTCCTCTCCCACGTGCTTAAAATCCTCCCTCTCTCCTTCCCTTCTCCCCACCGCCCCCTTTTCCCTCTTTCTAGTTCTTCTTCCATTTCCTCCTCCGCCGCCGGAATCTCTCCCTCTCCTCCTCTTCCTCCGTCCATTCCTTCCTCTCTTCCTCACAATGATGTCCTCTGCAAAATTTTTCTCAATTTTCTTCATCGCCATTCACGCCTTCTCACTCTCCTCATCCTCTCCAGTCGGCGGTGATCACGGCGGTTCTCCTCTAATAGCGGGCTGCGGCTTACAACCGCTGCGGATTTCTAATTCTCTCAAGAATAAGAGTATTGGAGCCTTGATGTCTGGATTGGAATCTCAGAACTGCGAGGTTTGGACGGAGGCTTGCTCTGAGTCGATCCTGAGTTTAGCGAAGCGGCCTGAGGTTGTTGATTGGTTGAAGAAGGTGAGGAGAAGAATCCATGAGAATCCGGAGCTTGCGTTCGAAGAATTCGAAACTAGTCAGTTAGTTCGCGATGAGTTGGATCGGATGGATATTAGCTACGAGCATCCGTTGGCTAAAACTGGCGTTCGTGCTTGGATCGGAACTGGCGGACCGCCTTTTGTTGCTCTTAGAGCCGATATGGATGCTCTTCCAATCCAGGAAGCTGTGGAATGGGAGCATAAAAGCAGAGTCCCAGGCAAGATGCATGCTTGTGGGCACGATGCTCACGTTACAATGCTTCTTGGTGCTGCCAAAATTTTAAAGGATCGTGAACATCTCTTGAAGGGGACGGTGATTCTACTATTTCAGCCAGCAGAGGAGGCCGGCAATGGCGCAAAGAGGATGATTGGAGATGGGGCTTTAAGAGACGTTCAAGCCATATTTGCAGTTCATGTTTCTCATGAACATCCCACCGCCGTTATCGGGTCCCGCCCCGGTCCTCTTCTTGCCGGCTGTGGCTTCTTTAGGGCCGTGATTACCGGCAAGAAGGGTCGTGCCGGTTCGCCACACCGGTCCGTCGACCCAGTTCTCGCTGCCTCCGCTGCGGTTGTCAGCTTGCAGGGGATTGTGTCTCGTGAAGCAAATCCTCTAGATTCGCAGGTAGTGTCAGTGACTTCGTTCAAAGGAGGAAGTAATCTGGATATGATTCCAGACAGCGTCGTTATTGGAGGGACCTTCAGGGCTTTCTCCAACTCAAGTTTCTACCAAGTTCTTCAAAGAATAGAGGAGGTAATTGTGGAGCAGGCCAGTGTCTATAGATGCTCAGCAATGGTGGATTTCTTTGAAAAAGAATACACCATATACCCACCAACTGTAAATGATGAAAGAATGTATGAACATGTGAAGAAAGTGGCAATTGATCTTCATGGTTCACAAAATTTCAGGCTTGTCCAACCAATGATGGGAGCTGAGGACTTTTCCTTCTACTCAGAGTTTGTTCCTGCAGCCTTCTATTACATAGGAGTCAGGAATGAAACTTTAGGCTCGATCCACACGGGCCACTCCCCCTACTTTATGATCGACGAAGACGTCCTCCCGATCGGTGCTGCAACTCATGCAACCATCGCCGAGAGGTACCTGTACGAGCATGGAGAATGA 1689 49.91 MKVVVLSASIRRPLSPHRPYTSYSTTCAKFACLFFPNLFSSPTCLKSSLSPSLLPTAPFSLFLVLLPFPPPPPESLPLLLFLRPFLPLFLTMMSSAKFFSIFFIAIHAFSLSSSSPVGGDHGGSPLIAGCGLQPLRISNSLKNKSIGALMSGLESQNCEVWTEACSESILSLAKRPEVVDWLKKVRRRIHENPELAFEEFETSQLVRDELDRMDISYEHPLAKTGVRAWIGTGGPPFVALRADMDALPIQEAVEWEHKSRVPGKMHACGHDAHVTMLLGAAKILKDREHLLKGTVILLFQPAEEAGNGAKRMIGDGALRDVQAIFAVHVSHEHPTAVIGSRPGPLLAGCGFFRAVITGKKGRAGSPHRSVDPVLAASAAVVSLQGIVSREANPLDSQVVSVTSFKGGSNLDMIPDSVVIGGTFRAFSNSSFYQVLQRIEEVIVEQASVYRCSAMVDFFEKEYTIYPPTVNDERMYEHVKKVAIDLHGSQNFRLVQPMMGAEDFSFYSEFVPAAFYYIGVRNETLGSIHTGHSPYFMIDEDVLPIGAATHATIAERYLYEHGE 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18666628 18673687 + CcPI632755_08g007130.1 Cco08g0713 185187

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0713 562 SUPERFAMILY Zn-dependent exopeptidases 177 559 - -
Cco08g0713 562 NCBIfam amidohydrolase 184 545 IPR017439 GO:0016787(InterPro)
Cco08g0713 562 FunFam N-acetyldiaminopimelate deacetylase 347 465 - -
Cco08g0713 562 PANTHER PEPTIDASE M20 FAMILY MEMBER 161 560 IPR017439 GO:0005783(PANTHER)|GO:0009694(PANTHER)|GO:0009850(PANTHER)|GO:0010179(PANTHER)|GO:0016787(PANTHER)|GO:0016787(InterPro)
Cco08g0713 562 SUPERFAMILY Bacterial exopeptidase dimerisation domain 348 456 IPR036264 -
Cco08g0713 562 CDD M20_IAA_Hyd 182 557 IPR044757 GO:0009850(InterPro)|GO:0016787(InterPro)
Cco08g0713 562 Gene3D - 347 465 - -
Cco08g0713 562 Pfam Peptidase family M20/M25/M40 239 554 IPR002933 GO:0016787(InterPro)
Cco08g0713 562 Pfam Peptidase dimerisation domain 352 446 IPR011650 -
Cco08g0713 562 Gene3D Zn peptidases 184 542 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0713 K21604 - - csv:101215789 852.818
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2763 Cco-Chr5:35488101 Cco08g0713 Cco-Chr8:18666628 4.10E-135 dispersed
Cco07g1431 Cco-Chr7:28397000 Cco08g0713 Cco-Chr8:18666628 2.10E-137 dispersed
Cco08g0713 Cco-Chr8:18666628 Cco10g1855 Cco-Chr10:32150950 5.80E-118 dispersed
Cco08g0713 Cco-Chr8:18666628 Cco03g1651 Cco-Chr3:31155160 2.30E-138 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g253 . . . . . . . . Cmo04g02477 Cmo15g00685 . . . . Sed01g3120 . . Bhi04g01905 Tan11g1268 Cmetu03g0844 . Hepe02g2259 . Lcy10g1230 Cla08g00599 Cam08g1012 Cec08g0603 Cco08g0713 Clacu08g0724 . Cre08g0533 . . . Cone20ag0442 . . . Cme03g00543 Blo17g00176 . . Bda13g01480 . Bpe14g00384 . Bma02g00217 . . . . . Car04g02294 Car15g00620 Cpe01g02055 . . . . . . . . . . . . . . . Lsi08g00440 . Chy03g00792 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008544 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 35