Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0714 ATGGAATTGAAAACAGAAGTAAAGGAAGTTCAACACCATTTCCATGTACTGGCAGTGGATGATAGTCTTATTGATAGAAAGCTTTTGGAAAAGCTCTTAACAATTTTTTCATGTGAAGTTACCTGCGTGGAATCTGGAGATAAAGCTCTTAGATATTTGGGTCTTCTTGATGATCTCGATAAATTCTCTTCTTCTGCTGCTGCTGCTTCTTTTTCTTCCTCACAACTCTCCCAACAACAGGAAGTCAAAGTCAACCTAATCATGACAGATTACTGTATGCCTGGGATGAGTGGTTATGATCTACTCAAACGACTCAAGGGATCTTATTGGAAGGATATTCCTGTTGTTGTGATGTCATCAGAGAACGAACCTTCAAGAATCAACATGTGTTTGGAAGAAGGAGCAGAGGAATTCCTTCTAAAACCTCTTCAACTATCAGATGTCAAGAAGCTCGAGCCTCACCTTCAAAAATCCCTCACCCGTTGTTCTACAGATCAAATCAAGGAAGAAGAAATTACCACAGTCGGAATCGGAATCACCAACGAACAGAACTTGAAATTAGAAGAGAGTAAGAAGAATGAGAATAGCATTAATAATAGCTTGAGCAAGAGAAAGGCAGCGAATCCAGAGCATTGTGAAGAAAGACGACCAAAATTGAAAGAATTGGAAGCTGGAGTATGA 681 39.35 MELKTEVKEVQHHFHVLAVDDSLIDRKLLEKLLTIFSCEVTCVESGDKALRYLGLLDDLDKFSSSAAAASFSSSQLSQQQEVKVNLIMTDYCMPGMSGYDLLKRLKGSYWKDIPVVVMSSENEPSRINMCLEEGAEEFLLKPLQLSDVKKLEPHLQKSLTRCSTDQIKEEEITTVGIGITNEQNLKLEESKKNENSINNSLSKRKAANPEHCEERRPKLKELEAGV 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18714733 18718857 + CcPI632755_08g007140.1 Cco08g0714 185188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0714 226 CDD REC_typeA_ARR 16 151 - -
Cco08g0714 226 MobiDBLite consensus disorder prediction 190 226 - -
Cco08g0714 226 SMART REC_2 14 152 IPR001789 GO:0000160(InterPro)
Cco08g0714 226 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 205 IPR045279 GO:0009736(InterPro)
Cco08g0714 226 MobiDBLite consensus disorder prediction 206 226 - -
Cco08g0714 226 Pfam Response regulator receiver domain 66 149 IPR001789 GO:0000160(InterPro)
Cco08g0714 226 ProSiteProfiles Response regulatory domain profile. 15 156 IPR001789 GO:0000160(InterPro)
Cco08g0714 226 Gene3D - 15 224 - -
Cco08g0714 226 SUPERFAMILY CheY-like 14 150 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0714 Cco-Chr8:18714733 Cco10g1598 Cco-Chr10:29261022 1.40E-38 dispersed
Cco08g0714 Cco-Chr8:18714733 Cco06g1869 Cco-Chr6:28929583 2.10E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59757 PF00072 Response_reg 1.30E-16 CL0304 Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0714 K14492 - csv:101216267 320.472