Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0717 ATGGCGTCTTCATCGTTGATTCGGTTCTGTGTGCTTGCTTCTGTTCTACTTTCTGCTTCTTTCTTTGAGATCTACGCGGAAGAGGCTGCAGCGAAGGAATTTGTTCTTACTTTGGACAATTCCAACTTCTCCGATGTTGTTTCCAAGCATAACTTCATCGTCGTTGAGTTCTACGCCCCGTGGTGTGGGCATTGTAAGAACCTGGCACCAGAGTATGAAAAAGCTGCGTCTGTTTTGAGCAGTCATGACCCTCCGATTACTTTAGCCAAAGTTGACGCAAATGAAGAGTCGAACAGAGAGCTGGCAAGTCAATTTGAAATTAGGGGTTTCCCCACCATTAAGATACTCAGAAATGGGGGCAAATCAAGTCAGGATTACAAGGGACCTCGCGATGCAGATGGTATTGTTGACTACTTGAAGAAGCAAAGTGGGCCTGCATCTGCTGAAATAAAATCTGCCGAGGATGCTACTAATCTCATTAAGAATGTTTTCATTGTTGGGATATTTCCAAAGCTTTCTGGAGAAGAGTTTGATAACTACATCGCTTTGGCTGAGAAGTTGCGTTCTGACTATGATTTTGGTCACACTTTGGATGCTAAGCTACTTCCACGTGGAGAAACATCCGTATCTGGCCCAATCGTTAGGCTTTTCAAGCCATTCGATGAACAATTTGTTGATTTTAAGGATTTCGACGCGGCTAAGTTAGAGAAGTTCATTGAAGAATCTAGTATTCCCGTGGTAACAGAGTTCAATAATGATCCTAGCAATCACGTATACCTTTCCAAGTTCTTCTCCACTTCTAATGATAAGGCTATGTTCTTTCTGAATTACGCCACAGAGGCCGCTGATTCTTTGAAATCCAAGTACCGTGAAGTTGCTGAACAGTACAAAGGAGAGGGAATAAGTTTCCTAATTGGAGACAGCCAATCCAGTCAAGCTGCTCTAAACTATTTTGGACTTAAGGAAGATCAAGTGCCTGTCCTTCTTGTGCAAAAAAATGATAGGTTTAAGTATGTGAAATTCAATGTGGAGGCTGATCAGATTGCTCCTTGGGTGAAGGAATACAAGAACGGCAATGTGCCACAATTCATAAAGTCAGAACCCATTCCTGAGAGTAACAATGAACCTGTGAAAGTGGTTGTTGCTGATAGCCTCCAGGATGTAGTCTTTAAATCTGGAAAAAATGTTTTACTGGAATTTTATTCCCCATGGTGCGGGCACTGCAAAAAACTTGCTCCAACTTTAGAGGAAGTGGCTGTCTCATATGAAAGCGATCCTGATGTCATCATCGCTAAGTTTGATGCCACGGCGAATGACATTGCAGATAGCGACTTTGATGTCCAAGGTTACCCTACTATGTATTTCAGGTCAGCAAGCGGAAAGCTGGTGGAGTACAGTGGTGATAGATCCAAGGAAGACATCATAAATTTCATTGAGACAAATCGCGATAAAATCACGGAGGCAGATTCAAAACCCAAGGACACAGAGGCAGATTCAAAACCCAAGGACTCAAAGCCAGAATCAGAAGCCAAGGATGAGCTCTAA 1545 42.78 MASSSLIRFCVLASVLLSASFFEIYAEEAAAKEFVLTLDNSNFSDVVSKHNFIVVEFYAPWCGHCKNLAPEYEKAASVLSSHDPPITLAKVDANEESNRELASQFEIRGFPTIKILRNGGKSSQDYKGPRDADGIVDYLKKQSGPASAEIKSAEDATNLIKNVFIVGIFPKLSGEEFDNYIALAEKLRSDYDFGHTLDAKLLPRGETSVSGPIVRLFKPFDEQFVDFKDFDAAKLEKFIEESSIPVVTEFNNDPSNHVYLSKFFSTSNDKAMFFLNYATEAADSLKSKYREVAEQYKGEGISFLIGDSQSSQAALNYFGLKEDQVPVLLVQKNDRFKYVKFNVEADQIAPWVKEYKNGNVPQFIKSEPIPESNNEPVKVVVADSLQDVVFKSGKNVLLEFYSPWCGHCKKLAPTLEEVAVSYESDPDVIIAKFDATANDIADSDFDVQGYPTMYFRSASGKLVEYSGDRSKEDIINFIETNRDKITEADSKPKDTEADSKPKDSKPESEAKDEL 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18741156 18745022 - CcPI632755_08g007170.1 Cco08g0717 185191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0717 514 CDD PDI_a_PDI_a'_C 376 478 - -
Cco08g0717 514 Pfam Thioredoxin-like domain 169 344 - -
Cco08g0717 514 Gene3D Glutaredoxin 143 245 - -
Cco08g0717 514 PANTHER PROTEIN DISULFIDE ISOMERASE 24 502 - GO:0003756(PANTHER)|GO:0005783(PANTHER)|GO:0006457(PANTHER)|GO:0034976(PANTHER)
Cco08g0717 514 SUPERFAMILY Thioredoxin-like 148 245 IPR036249 -
Cco08g0717 514 SUPERFAMILY Thioredoxin-like 343 484 IPR036249 -
Cco08g0717 514 Gene3D Glutaredoxin 246 370 - -
Cco08g0717 514 FunFam Protein disulfide-isomerase 372 485 - -
Cco08g0717 514 CDD PDI_a_family 36 139 - -
Cco08g0717 514 ProSitePatterns Thioredoxin family active site. 397 415 IPR017937 -
Cco08g0717 514 MobiDBLite consensus disorder prediction 485 514 - -
Cco08g0717 514 CDD PDI_b'_family 268 356 - -
Cco08g0717 514 CDD PDI_b_family 147 241 - -
Cco08g0717 514 ProSitePatterns Thioredoxin family active site. 54 72 IPR017937 -
Cco08g0717 514 Gene3D Glutaredoxin 26 142 - -
Cco08g0717 514 NCBIfam protein disulfide-isomerase 35 514 IPR005792 GO:0003756(InterPro)
Cco08g0717 514 ProSiteProfiles Thioredoxin domain profile. 25 144 IPR013766 -
Cco08g0717 514 SUPERFAMILY Thioredoxin-like 242 374 IPR036249 -
Cco08g0717 514 ProSiteProfiles Thioredoxin domain profile. 354 483 IPR013766 -
Cco08g0717 514 FunFam Protein disulfide-isomerase 143 241 - -
Cco08g0717 514 NCBIfam protein disulfide-isomerase domain 381 480 IPR005788 GO:0003756(InterPro)
Cco08g0717 514 NCBIfam protein disulfide-isomerase domain 39 142 IPR005788 GO:0003756(InterPro)
Cco08g0717 514 FunFam Protein disulfide-isomerase 24 142 - -
Cco08g0717 514 SUPERFAMILY Thioredoxin-like 35 145 IPR036249 -
Cco08g0717 514 Pfam Thioredoxin 377 479 IPR013766 -
Cco08g0717 514 Pfam Thioredoxin 35 141 IPR013766 -
Cco08g0717 514 FunFam Protein disulfide-isomerase 242 371 - -
Cco08g0717 514 Gene3D Glutaredoxin 371 485 - -
Cco08g0717 514 PRINTS Thioredoxin family signature 53 61 - -
Cco08g0717 514 PRINTS Thioredoxin family signature 61 70 - -
Cco08g0717 514 PRINTS Thioredoxin family signature 106 117 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0717 K09580 - - csv:101216516 927.932
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1945 Cco-Chr2:32370696 Cco08g0717 Cco-Chr8:18741156 1.80E-18 transposed
Cco03g0225 Cco-Chr3:2359931 Cco08g0717 Cco-Chr8:18741156 7.60E-60 transposed
Cco09g0516 Cco-Chr9:4529410 Cco08g0717 Cco-Chr8:18741156 1.90E-21 transposed
Cco11g0793 Cco-Chr11:9044002 Cco08g0717 Cco-Chr8:18741156 6.50E-24 transposed
Cco11g1632 Cco-Chr11:29146163 Cco08g0717 Cco-Chr8:18741156 1.10E-139 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g250 Blo01g01298 . . . Bpe02g00639 . . Bma01g02074 Cmo04g02483 Cmo15g00679 . Cma09g00787 . . Sed01g3115 Cpe06g00621 . Bhi04g01901 Tan11g1265 Cmetu07g2195 . . . . Cla08g00602 Cam08g1016 Cec08g0606 Cco08g0717 Clacu08g0727 . Cre08g0535 Cone4ag1414 Cone7ag1524 Cone17ag1287 Cone20ag0440 Lsi04g02397 Csa04g01791 . Cme03g00538 Blo17g00175 Blo18g00181 . . Bpe02g01646 Bpe14g00385 Bma01g00810 Bma02g00216 . . Cmo09g00779 . . Car04g02297 Car15g00617 Cpe01g02058 . . . . . . . . Cla11g01541 Cam11g1603 Cec11g1631 Cco11g1633 Clacu11g1759 Cmu11g1576 Cre11g1994 Lsi08g00442 . Chy07g00630 Cme07g00838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003308 0 2 2 3 3 1 2 1 1 1 1 1 2 2 1 2 1 4 2 1 1 1 1 1 1 1 1 4 2 2 48