Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0722 ATGTCGGAAGTAATTGCCGTAATGGATATTGACGACGATAATGGCAACAACGAAGCTGAAAAGCCAGTCAAGGGCAAAAACGTTGCCAGTCCTGCCGCCGCACCCGACGGCAAAGCGACACCCTGGGTCGAGAAGTTCCGGCCTAAGTCTCTTGCTGATGTTGCTGCTCACCGCGACATTGTTGACACCATCGACAAGCTGACCAGTGAGAATAGGCTGCCACATCTCCTGTTGTACGGCCCTCCTGGCACTGGCAAGACATCAACTATTCTAGCGGTTGCTCGCAAGCTATATGGAACAAATTACCATAATATGATTCTGGAGCTGAACGCATCAGATGATAGAGGGATAGATGTTGTCAGACAGCAGATTCAGGATTTTGCAAGTACCCAAAGCTTCTCATTTGGGGCAAAGGCATCTGTAAAATTGGTTTTATTGGACGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTACGTAGAGTAATTGAGAAATACACAAAAAATACAAGGTTTGCTCTTATTTGCAATCACGTCAATAAGATTATTCCAGCATTACAATCAAGGTGTACCCGCTTTCGATTTGCTCCCCTGGATAACTTTCATGTCACTGAGCGGCTCAGATATGTTATTGAGGCTGAGAGGTTGGATGTCACTGAGAGTGGCTTAACTGCCCTTGTTCGACTTTGCACTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGTCAACGCATATGGCTTCTCAGCATATTACTGAAGAAGCTGTATACCTTTGCACAGGAAATCCAATGCCTAAAGACATAGAGCAAATATCATTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGCGAATATCTGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTCTGTTCGTTTTTAAGATAAAGATGCCATCGGATATCAGAGTCCAGTTGATTAATGATCTAGCTGACATAGAGTACCGGATGAGTTTCGGATGCAATGACAAGTTACAACTCGGATCGCTCATCTCATCTTTTACACGAGCTAGATCTGCACTCGTCGCTGCTGCACAGTAG 1092 43.96 MSEVIAVMDIDDDNGNNEAEKPVKGKNVASPAAAPDGKATPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTESGLTALVRLCTGDMRKALNILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTLFVFKIKMPSDIRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVAAAQ 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18796537 18802171 + CcPI632755_08g007220.1 Cco08g0722 185196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0722 363 CDD AAA 60 198 - -
Cco08g0722 363 FunFam Replication factor C subunit 5 201 263 - -
Cco08g0722 363 Gene3D - 264 361 - -
Cco08g0722 363 Pfam Replication factor C C-terminal domain 264 349 IPR013748 -
Cco08g0722 363 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 40 355 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Cco08g0722 363 Pfam ATPase family associated with various cellular activities (AAA) 76 198 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco08g0722 363 FunFam Replication factor C subunit 5 264 361 - -
Cco08g0722 363 SMART AAA_5 72 202 IPR003593 GO:0016887(InterPro)
Cco08g0722 363 SUPERFAMILY post-AAA+ oligomerization domain-like 264 354 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Cco08g0722 363 CDD HLD_clamp_RFC 203 261 IPR047854 -
Cco08g0722 363 FunFam Replication factor C subunit 5 34 199 - -
Cco08g0722 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 257 IPR027417 -
Cco08g0722 363 Gene3D - 202 263 - -
Cco08g0722 363 Gene3D - 36 198 IPR027417 -
Cco08g0722 363 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1175 Cco-Chr7:25513918 Cco08g0722 Cco-Chr8:18796537 2.00E-09 dispersed
Cco08g0722 Cco-Chr8:18796537 Cco10g0353 Cco-Chr10:4078359 2.50E-53 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0722 K10756 - csv:101217230 692.575