Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g0730 | ATGAGTACGGCGGCGACACCGTCCTTTGGTGGTGGCAACAACCGGATAGCGGCAGTTAACACGGTGGAGAGAACAACAACTCCGGCCAACGCCGTCAAGCCACAGAATCACCAAGAACAACAAACCACCACCCATCAGAAACCTGGATGGAGAAAGTTTCTATCACACGTTGGCCCTGGCTTCCTCGTCTCATTGGCTTATCTTGATCCTGGCAATTTGGAAACGGACTTGCAAGCTGGAGCTAATCACGGATTCGAGCTTCTATGGGTGGTGCTTATCGGATTAATATTTGCGCTCATAATCCAATCCCTTGCTGCAAATCTTGGCGTAAGCACCGGAAAACACCTTTCGGAAGTATGCAAAGCCGAATATCCCATATTTGTGAAGTATTGCCTTTGGTTGCTGGCTGAAGTTGCTGTAATAGCCGCCGATATTCCCGAAGTGATAGGAACAGCCTTTGCTTTGAATATTCTATTCCATATTCCTGTTTGGGCTGGAGTTCTTCTCACCGGCTTAAGTACCCTTTTGCTCCTTGGACTCCAAAGATATGGGGCTCGGAAGCTGGAATTGCTGATAGCAATATTGGTGTTCATAATGGCGGCGTGTTTCTTCGGGGAAATGAGCTACGTGAAGCCGCCGGCGAGCGGAGTTTTAAAAGGAATGTTTGTTCCAAAGCTGAAGGGGGAAGGAGCCACCGGCGACGCCATTGCTCTTCTGGGCGCCCTCGTTATGCCGCATAACCTGTTTCTTCATTCTGCTCTGGTGCTATCAAGGAAAGTCCCCAATTCCGTCCGCGGTGTCAACGACGCGTGTAGGTACTTCCTAATAGAGAGCGGATTTGCATTGTTCATAGCATTTTTAATAAACGTGGCCGTGGTTTCAGTTTCCGGCACCGTTTGTACGGTGGGAAAAGTCTCCGAAACCACTGCTAATCAGTGCTCCGACATAACTCTCAACTCCGCCTCCTTCCTCCTCCAGAACGTTTTGGGAAAATCAAGCTCCATTATTTACGCCATTGCGTTGTTTGCCTCCGGACAAAGCTCCAGCATCACCGGCACTTATGCCGGTCAGTTCATCATGCAGGGATTTTTGGACCTGAAAATGAAAACATGGGCGAGAAACCTTATGACAAGGTCCATTGCAATAACGCCTAGTCTCATTGTATCCATCATCGGTGGACCTCAAGGAGCTGGCCGTCTCATCATTATTGCATCGATGATTCTCTCCTTCGAGCTTCCATTTGCTCTAATTCCACTCCTCAAATTCAGTAGCAGCACAACCAAGATGGGCCCCCACAAGAATTCCATATACATCATTGTAATCTCGTGGATATTGGGCCTGGGAATCATCGGTATCAACATCTATTATCTCAGTACGGGCTTCGTGGGCTGGCTAATCCACAACAATTTACACAAAGTTGCAAATGTTTTGATTGGGATCGTTGTGTTTCCATTAATGGCCACGTATATTCTTGCCGTTATTTACTTAACGTTTCGAAAAGACAGGGTTGTGACTTACATTGAGCCCGAAAAGGATGATCCTATGGGCCAAGCCCATTTGGAAAGTGGGCTGAACAATTCTTTTGGGCCGCGTGACGTCGCCCCTGTGCCTTTTAGAGAGGATTTGGCCCATATCCCACTACCAGAGTAG | 1650 | 48.0 | MSTAATPSFGGGNNRIAAVNTVERTTTPANAVKPQNHQEQQTTTHQKPGWRKFLSHVGPGFLVSLAYLDPGNLETDLQAGANHGFELLWVVLIGLIFALIIQSLAANLGVSTGKHLSEVCKAEYPIFVKYCLWLLAEVAVIAADIPEVIGTAFALNILFHIPVWAGVLLTGLSTLLLLGLQRYGARKLELLIAILVFIMAACFFGEMSYVKPPASGVLKGMFVPKLKGEGATGDAIALLGALVMPHNLFLHSALVLSRKVPNSVRGVNDACRYFLIESGFALFIAFLINVAVVSVSGTVCTVGKVSETTANQCSDITLNSASFLLQNVLGKSSSIIYAIALFASGQSSSITGTYAGQFIMQGFLDLKMKTWARNLMTRSIAITPSLIVSIIGGPQGAGRLIIIASMILSFELPFALIPLLKFSSSTTKMGPHKNSIYIIVISWILGLGIIGINIYYLSTGFVGWLIHNNLHKVANVLIGIVVFPLMATYILAVIYLTFRKDRVVTYIEPEKDDPMGQAHLESGLNNSFGPRDVAPVPFREDLAHIPLPE | 549 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 18868106 | 18875208 | - | CcPI632755_08g007300.1 | Cco08g0730 | 185204 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g0730 | 549 | NCBIfam | metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family | 51 | 427 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
Cco08g0730 | 549 | PRINTS | Natural resistance-associated macrophage protein signature | 160 | 179 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
Cco08g0730 | 549 | PRINTS | Natural resistance-associated macrophage protein signature | 373 | 390 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
Cco08g0730 | 549 | PRINTS | Natural resistance-associated macrophage protein signature | 132 | 158 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
Cco08g0730 | 549 | PRINTS | Natural resistance-associated macrophage protein signature | 185 | 206 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
Cco08g0730 | 549 | PRINTS | Natural resistance-associated macrophage protein signature | 235 | 258 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
Cco08g0730 | 549 | PRINTS | Natural resistance-associated macrophage protein signature | 345 | 364 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
Cco08g0730 | 549 | PRINTS | Natural resistance-associated macrophage protein signature | 405 | 424 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
Cco08g0730 | 549 | Pfam | Natural resistance-associated macrophage protein-like | 74 | 435 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
Cco08g0730 | 549 | MobiDBLite | consensus disorder prediction | 29 | 48 | - | - | |
Cco08g0730 | 549 | NCBIfam | Nramp family divalent metal transporter | 58 | 424 | - | - | |
Cco08g0730 | 549 | Hamap | Divalent metal cation transporter MntH [mntH]. | 36 | 461 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
Cco08g0730 | 549 | PANTHER | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER | 37 | 508 | IPR001046 | GO:0005384(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco08g0730 | Cco-Chr8:18868106 | Cco10g1281 | Cco-Chr10:25719742 | 2.30E-167 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g0730 | K21398 | - | csv:101219356 | 935.25 |