Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0730 ATGAGTACGGCGGCGACACCGTCCTTTGGTGGTGGCAACAACCGGATAGCGGCAGTTAACACGGTGGAGAGAACAACAACTCCGGCCAACGCCGTCAAGCCACAGAATCACCAAGAACAACAAACCACCACCCATCAGAAACCTGGATGGAGAAAGTTTCTATCACACGTTGGCCCTGGCTTCCTCGTCTCATTGGCTTATCTTGATCCTGGCAATTTGGAAACGGACTTGCAAGCTGGAGCTAATCACGGATTCGAGCTTCTATGGGTGGTGCTTATCGGATTAATATTTGCGCTCATAATCCAATCCCTTGCTGCAAATCTTGGCGTAAGCACCGGAAAACACCTTTCGGAAGTATGCAAAGCCGAATATCCCATATTTGTGAAGTATTGCCTTTGGTTGCTGGCTGAAGTTGCTGTAATAGCCGCCGATATTCCCGAAGTGATAGGAACAGCCTTTGCTTTGAATATTCTATTCCATATTCCTGTTTGGGCTGGAGTTCTTCTCACCGGCTTAAGTACCCTTTTGCTCCTTGGACTCCAAAGATATGGGGCTCGGAAGCTGGAATTGCTGATAGCAATATTGGTGTTCATAATGGCGGCGTGTTTCTTCGGGGAAATGAGCTACGTGAAGCCGCCGGCGAGCGGAGTTTTAAAAGGAATGTTTGTTCCAAAGCTGAAGGGGGAAGGAGCCACCGGCGACGCCATTGCTCTTCTGGGCGCCCTCGTTATGCCGCATAACCTGTTTCTTCATTCTGCTCTGGTGCTATCAAGGAAAGTCCCCAATTCCGTCCGCGGTGTCAACGACGCGTGTAGGTACTTCCTAATAGAGAGCGGATTTGCATTGTTCATAGCATTTTTAATAAACGTGGCCGTGGTTTCAGTTTCCGGCACCGTTTGTACGGTGGGAAAAGTCTCCGAAACCACTGCTAATCAGTGCTCCGACATAACTCTCAACTCCGCCTCCTTCCTCCTCCAGAACGTTTTGGGAAAATCAAGCTCCATTATTTACGCCATTGCGTTGTTTGCCTCCGGACAAAGCTCCAGCATCACCGGCACTTATGCCGGTCAGTTCATCATGCAGGGATTTTTGGACCTGAAAATGAAAACATGGGCGAGAAACCTTATGACAAGGTCCATTGCAATAACGCCTAGTCTCATTGTATCCATCATCGGTGGACCTCAAGGAGCTGGCCGTCTCATCATTATTGCATCGATGATTCTCTCCTTCGAGCTTCCATTTGCTCTAATTCCACTCCTCAAATTCAGTAGCAGCACAACCAAGATGGGCCCCCACAAGAATTCCATATACATCATTGTAATCTCGTGGATATTGGGCCTGGGAATCATCGGTATCAACATCTATTATCTCAGTACGGGCTTCGTGGGCTGGCTAATCCACAACAATTTACACAAAGTTGCAAATGTTTTGATTGGGATCGTTGTGTTTCCATTAATGGCCACGTATATTCTTGCCGTTATTTACTTAACGTTTCGAAAAGACAGGGTTGTGACTTACATTGAGCCCGAAAAGGATGATCCTATGGGCCAAGCCCATTTGGAAAGTGGGCTGAACAATTCTTTTGGGCCGCGTGACGTCGCCCCTGTGCCTTTTAGAGAGGATTTGGCCCATATCCCACTACCAGAGTAG 1650 48.0 MSTAATPSFGGGNNRIAAVNTVERTTTPANAVKPQNHQEQQTTTHQKPGWRKFLSHVGPGFLVSLAYLDPGNLETDLQAGANHGFELLWVVLIGLIFALIIQSLAANLGVSTGKHLSEVCKAEYPIFVKYCLWLLAEVAVIAADIPEVIGTAFALNILFHIPVWAGVLLTGLSTLLLLGLQRYGARKLELLIAILVFIMAACFFGEMSYVKPPASGVLKGMFVPKLKGEGATGDAIALLGALVMPHNLFLHSALVLSRKVPNSVRGVNDACRYFLIESGFALFIAFLINVAVVSVSGTVCTVGKVSETTANQCSDITLNSASFLLQNVLGKSSSIIYAIALFASGQSSSITGTYAGQFIMQGFLDLKMKTWARNLMTRSIAITPSLIVSIIGGPQGAGRLIIIASMILSFELPFALIPLLKFSSSTTKMGPHKNSIYIIVISWILGLGIIGINIYYLSTGFVGWLIHNNLHKVANVLIGIVVFPLMATYILAVIYLTFRKDRVVTYIEPEKDDPMGQAHLESGLNNSFGPRDVAPVPFREDLAHIPLPE 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18868106 18875208 - CcPI632755_08g007300.1 Cco08g0730 185204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0730 549 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 51 427 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cco08g0730 549 PRINTS Natural resistance-associated macrophage protein signature 160 179 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cco08g0730 549 PRINTS Natural resistance-associated macrophage protein signature 373 390 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cco08g0730 549 PRINTS Natural resistance-associated macrophage protein signature 132 158 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cco08g0730 549 PRINTS Natural resistance-associated macrophage protein signature 185 206 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cco08g0730 549 PRINTS Natural resistance-associated macrophage protein signature 235 258 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cco08g0730 549 PRINTS Natural resistance-associated macrophage protein signature 345 364 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cco08g0730 549 PRINTS Natural resistance-associated macrophage protein signature 405 424 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cco08g0730 549 Pfam Natural resistance-associated macrophage protein-like 74 435 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cco08g0730 549 MobiDBLite consensus disorder prediction 29 48 - -
Cco08g0730 549 NCBIfam Nramp family divalent metal transporter 58 424 - -
Cco08g0730 549 Hamap Divalent metal cation transporter MntH [mntH]. 36 461 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cco08g0730 549 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 37 508 IPR001046 GO:0005384(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0730 Cco-Chr8:18868106 Cco10g1281 Cco-Chr10:25719742 2.30E-167 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0730 K21398 - csv:101219356 935.25