Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0731 ATGTCTGCCCATAATCGCCGCCCTTCGTTTTCGTCGTCGACATCGTCCTCGTTGGCCAAACGACAAGCGTCCTCGGCCTCGTCGTCAGACAATGTCGGAAAAGTTATGGCAGTTCCGCCACATTTGGCGAAGAAGCGAGCACCACTCGGTAACCTAACGAATTTTAAGAATGTGTCTCATAGCGCAGCCAAAAGCTCTGTTCCTCCTGCTATTATGGTGCCTTGTGCAACCAAAGCTGTCAAGGCTAGAAAGAGTTCCCCTGCTAGAACTCGCAGCACTAACTTGCTGGCGACTAATACGACCACATTGCTCGATGTCAAAACGACGAATGCAATTGCTCCTAGCAATGTTACAGCTTTCTCAAGAACTGATGCAACCGCTGTCTCTAGTTCTATGGATGTCTCTCCCTCTAAATCAGATGGAGTTTCAGTTTCCTTAGATGAAACTATGTCTACTTGCGATTCGTTTAAGAGTCCGGACGTCGAGTACTTGGACAATACTGATGTCCCAGCAGTTGATTCTGTTGAGAGGAAAACTAAAAGCAGTCTCTGCATTTCAGGTCCTGCACCAATTAGTAGTCAGGCACCAGTTAAAGGTAGTATATGCAATAGAGATGTAATTACAGAAATGGAAACAGATGGCGACATCGTTGATGTTGACACGGATTTCATGGATCCCCAGCAATGTGCTACAATTGCTTGTGACATTTACAAGCACTTACGAGCATCTGAGGCAAAGAAAAGGCCTTCTACAGATTTCATGGAGAAAATTCAGAAGGATATAAATTCAAATATGCGTGCCATACTGATCGATTGGCTTGTGGAGGTAGCAGAAGAGTATAGGCTTGTCCCAGATACTCTATATTTGACAGTGAACTACATTGATCGATACCTATCTGGAAATTCGATGGATCGACAACGATTACAATTGCTTGGTGTTGCTTGCATGATGATTGCCTCAAAATATGAAGAGATCTGTGCGCCTCAAGTGGAAGAATTTTGTTACATAACTGATAACACATATTTTAAAGACGAGGTATTGGAAATGGAATCTTCTGTCTTGAATTACTTGAAGTTCGAAATGACGGCCCCTACACCTAAATGTTTCTTAAGGCGATTTGTTCGTGCTGCTCAAGGCGCCACCGATGAGGTTTCATCAATGCAGTTGGAATGCTTGGCCAACTTCCTTGCTGAATTATCTCTTATAGAATACAGTATGCTCTGCTACGCACCATCGCTCGTGGCTGCCTCGGCGATCTTCTTGGCGAAGTTCATACTTCTTCCAACTAAGAGACCATGGAACTCCACCTTGCAACATTATACACATTATCAGCCATCCGACCTTGTCGACTGCGTTAAGGATTTGCATCGCCTCTGCTGCAACACCCACAATTCTACCTTACCAGCCATCAGAGAGAAATACAGCCAGCATAAGTACAAGCACGTGGCAAAGAAGTATTGCCCTCCGACGATACCACCGGAGTTCTTGCAGAATCAAACACAGTAA 1506 44.62 MSAHNRRPSFSSSTSSSLAKRQASSASSSDNVGKVMAVPPHLAKKRAPLGNLTNFKNVSHSAAKSSVPPAIMVPCATKAVKARKSSPARTRSTNLLATNTTTLLDVKTTNAIAPSNVTAFSRTDATAVSSSMDVSPSKSDGVSVSLDETMSTCDSFKSPDVEYLDNTDVPAVDSVERKTKSSLCISGPAPISSQAPVKGSICNRDVITEMETDGDIVDVDTDFMDPQQCATIACDIYKHLRASEAKKRPSTDFMEKIQKDINSNMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNSMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKDEVLEMESSVLNYLKFEMTAPTPKCFLRRFVRAAQGATDEVSSMQLECLANFLAELSLIEYSMLCYAPSLVAASAIFLAKFILLPTKRPWNSTLQHYTHYQPSDLVDCVKDLHRLCCNTHNSTLPAIREKYSQHKYKHVAKKYCPPTIPPEFLQNQTQ 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18900794 18903855 + CcPI632755_08g007310.1 Cco08g0731 185205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0731 501 Pfam Cyclin, C-terminal domain 364 485 IPR004367 -
Cco08g0731 501 SMART cyclin_7 271 355 IPR013763 -
Cco08g0731 501 SMART cyclin_7 368 457 IPR013763 -
Cco08g0731 501 Pfam Cyclin, N-terminal domain 235 362 IPR006671 -
Cco08g0731 501 SUPERFAMILY Cyclin-like 364 491 IPR036915 -
Cco08g0731 501 MobiDBLite consensus disorder prediction 1 34 - -
Cco08g0731 501 CDD CYCLIN_AtCycA-like_rpt2 364 479 - -
Cco08g0731 501 SUPERFAMILY Cyclin-like 225 361 IPR036915 -
Cco08g0731 501 CDD CYCLIN_AtCycA_like_rpt1 225 360 - -
Cco08g0731 501 FunFam Mitotic cyclin 6 249 349 - -
Cco08g0731 501 Gene3D - 235 484 - -
Cco08g0731 501 SMART Cyclin_C_2 364 488 IPR004367 -
Cco08g0731 501 PANTHER CYCLINS 215 476 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cco08g0731 501 ProSitePatterns Cyclins signature. 266 297 IPR048258 -
Cco08g0731 501 Gene3D - 249 362 - -
Cco08g0731 501 FunFam Cyclin A1 351 484 - -
Cco08g0731 501 MobiDBLite consensus disorder prediction 1 32 - -
Cco08g0731 501 PIRSF Cyclin_A_B_D_E 5 498 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0731 Cco-Chr8:18900794 Cco09g0233 Cco-Chr9:2091187 1.30E-81 dispersed
Cco08g0731 Cco-Chr8:18900794 Cco05g2298 Cco-Chr5:31630106 6.00E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0731 K06627 - csv:101221569 901.738