Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0736 ATGACATGCCAAACGCTGGCGCTTGAGACTGCCCTTGACCAAAATGGGATTAAGATTTCACCTGAGATAGCTGAGGCTGTCCTCAAAAAATTTGAGAATGCCGGCATGTTAGCTTATAGGTTCTTTGAATGGGCTTCCAAACAGCGAAACTATGTCCATAGTGTGAGGGCTTACCACTCTATGATCGAGTCTTTAGCTAAGATTAGGCAGTACCAGTTGGTGTGGGATCTGGTGAATGCTATGAGGAATAAGGAGATTCTAAATGTTGAGACGTTTTGTATTATCATGAGAAAGTATGCTAGAGCTCAGAAAGTAGAGGAAGCAGTTTATACATTTAATGTCATGGAAAAATATAATATGAAACCAAATGTAGCTGCATTTAATGGATTGCTGAGTGCTCTGTGCAAATCTAAGAATGTGAGGAAGGCTCAGGAAATTTTTGACGGTATGAAGGACCAATTTGTTCCTGACTCAAAAACTTACAGCATACTCATTGAAGGATGGGGGAGGGCTCCAAATCTTCCAAAGACAAGGGAGATTTTTAGAGAAATGATTGATAGCGGCTGCATTCCCGATATAGTGACATATAGCATTATGGTTGATGTTCTTTGCAAGGCCGGAAGAGTGGATGAAGCAGTTGAGATTGTAAAAGAAATGGATTCTAATAATTGTAAACCATCATCGTTTGTTTATAGTGTTTTGGTACATACATATGGCGTAGAAAATCGGATTGAGGATGCAGTCTCTACATTCTTGGAGATGGAAAGAAATGGAGTTATGGCTGATGTGGTGGCATATAATGCTTTAATCACTGCTTTCTGTAAAGCAAACAAGATTAAGAATGTTTATAGGGTGTTGAAGGACATGGACTTAAAGGGTGTTAGCCCCAATTCAAGGACTTGCAACATCATTATAAACAGCTTAATAGGCCGTGGTGAGACAGATGAGGCATTTAGGATCTTTCGTAGGATGGTCAAAGTGTGTGAACCAGATGTAGACTCCTATACCATGATCATAAAAATGTTTTGTGGGAGGAAGGAGCTTCATATGGCTCTTAAAGTCTGGCAGTATATGAAGAAGAAGCAGTTTGTTCCAAGCATGCACACATTTTCTGTTCTTATTAATGGACTGTGTCAGATAGGCAATGCTACACAAGCTTGTGTGTTGTTGGAAGAGATGATAGAGAAGGGAATCCGACCTTCTGAACTCCTATCTTTGCTGGATGGACTATTAAGAAATATTGAGATGAAGTCTTTGGAGGCTAAATGTCATCCAGATTCTGTTTCTTCCTTTCTTCTGTCGCAGAGGTCATCGCCCATGCATTTATCATTTTCTTCACTTCATGCTTCTGTTCGTCGCATGGTTCTTCTGTGCAATGTTAAGTTGATTTGA 1392 39.94 MTCQTLALETALDQNGIKISPEIAEAVLKKFENAGMLAYRFFEWASKQRNYVHSVRAYHSMIESLAKIRQYQLVWDLVNAMRNKEILNVETFCIIMRKYARAQKVEEAVYTFNVMEKYNMKPNVAAFNGLLSALCKSKNVRKAQEIFDGMKDQFVPDSKTYSILIEGWGRAPNLPKTREIFREMIDSGCIPDIVTYSIMVDVLCKAGRVDEAVEIVKEMDSNNCKPSSFVYSVLVHTYGVENRIEDAVSTFLEMERNGVMADVVAYNALITAFCKANKIKNVYRVLKDMDLKGVSPNSRTCNIIINSLIGRGETDEAFRIFRRMVKVCEPDVDSYTMIIKMFCGRKELHMALKVWQYMKKKQFVPSMHTFSVLINGLCQIGNATQACVLLEEMIEKGIRPSELLSLLDGLLRNIEMKSLEAKCHPDSVSSFLLSQRSSPMHLSFSSLHASVRRMVLLCNVKLI 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18972332 18982419 + CcPI632755_08g007360.1 Cco08g0736 185210

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0736 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Cco08g0736 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Cco08g0736 463 Pfam PPR repeat family 330 379 IPR002885 -
Cco08g0736 463 Pfam PPR repeat family 122 167 IPR002885 -
Cco08g0736 463 Pfam PPR repeat family 262 308 IPR002885 -
Cco08g0736 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Cco08g0736 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 327 IPR002885 -
Cco08g0736 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 88 122 IPR002885 -
Cco08g0736 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Cco08g0736 463 Pfam PPR repeat 91 119 IPR002885 -
Cco08g0736 463 Pfam PPR repeat 230 259 IPR002885 -
Cco08g0736 463 Pfam PPR repeat 188 219 IPR002885 -
Cco08g0736 463 Gene3D Tetratricopeptide repeat domain 326 399 IPR011990 GO:0005515(InterPro)
Cco08g0736 463 Gene3D Tetratricopeptide repeat domain 5 151 IPR011990 GO:0005515(InterPro)
Cco08g0736 463 Gene3D Tetratricopeptide repeat domain 222 325 IPR011990 GO:0005515(InterPro)
Cco08g0736 463 Gene3D Tetratricopeptide repeat domain 152 221 IPR011990 GO:0005515(InterPro)
Cco08g0736 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 123 153 IPR002885 -
Cco08g0736 463 NCBIfam pentatricopeptide repeat 300 326 IPR002885 -
Cco08g0736 463 NCBIfam pentatricopeptide repeat 91 124 IPR002885 -
Cco08g0736 463 NCBIfam pentatricopeptide repeat 368 402 IPR002885 -
Cco08g0736 463 NCBIfam pentatricopeptide repeat 160 193 IPR002885 -
Cco08g0736 463 NCBIfam pentatricopeptide repeat 194 227 IPR002885 -
Cco08g0736 463 NCBIfam pentatricopeptide repeat 126 153 IPR002885 -
Cco08g0736 463 NCBIfam pentatricopeptide repeat 230 262 IPR002885 -
Cco08g0736 463 NCBIfam pentatricopeptide repeat 264 297 IPR002885 -
Cco08g0736 463 NCBIfam pentatricopeptide repeat 334 366 IPR002885 -
Cco08g0736 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Cco08g0736 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Cco08g0736 463 SUPERFAMILY TPR-like 53 395 IPR011990 GO:0005515(InterPro)
Cco08g0736 463 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 27 308 IPR051222 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0736 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0642 Cco-Chr1:6585478 Cco08g0736 Cco-Chr8:18972332 2.00E-30 dispersed
Cco08g0736 Cco-Chr8:18972332 Cco09g1075 Cco-Chr9:10273247 1.30E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g221 . . . . . . . . . Cmo15g00663 . . . . Sed14g0950 . . Bhi04g01871 Tan11g1243 Cmetu09g0635 . Hepe02g2215 . . Cla08g00621 Cam08g1035 Cec08g0624 Cco08g0736 Clacu08g0745 . Cre08g0553 . . . Cone20ag0427 . . . . . . . Bda13g01470 . Bpe14g00395 . Bma02g00206 . . . . . . Car15g00602 . . . . . . . . . . . . . . . . Lsi08g00461 . Chy03g00757 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010579 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32