Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0742 ATGGGTTCATGTGATGACCCGGCTGTGATCGGGGAACCGTTTTGCGGCTCTGTTACTCGGCTGGTCGGGTGTTTGAGTCAACCTCTCTCCAAGCATCAGTCACGCCAGGAGATGGCTTCCTTTCCATCTAATTCCAGTGACGGTCAGATGTTTGAGCCAGATAGGGGACTGGGAGTGACTACGACTGGTGTCTGCACCAATGCATCGGAGCCTGATACTGCAGGGGAGGAAGGGATATGTAGAGGCTTCGAACATGCAGATGCTTTGCTAATGGATAAAAGTTTGGATAGTGATCCCTGTTTAAACGAGGATAACGAGGCTCGCAACGTGCGGGATAGAACATTGAGCTTGGATATGAAAGAGTCTCAAGACGTTGATGGTTTGGTTGATATTTTGGGCTGCAAAACTACCATGGAAATGATGTCTTTAACCGGGTCATTAGTAGATTCTGTTAAACGCGAAGAACTTGATAATAATAGTTGTATAATTGATGCTTCTGCAAAAGTCGAAAGAGACGATACTGTAGAAAATGGTCCTATTTTAGCACGGACGGGTACTTGTACAGATGACTTTAAATCTCCTTATGTCTGTGAAATTGTTTCTAATTCAGCTTCTGCCGATGGGCTGGCATGTGATTTCATACAACACAACGAGCTGCAAAATGATGGTGCTGGTTGTTCATTTTCAGAGGTTGCAGACAGGATAACTGAGGCTTCGGTTGAAATAGAAGCAGATATGTTGAATGAGATGTCACCTTTACAGAGTGGTCAAATACTACCAATACACGTCGAACAATCAGTTGCCAATTGTGATCGGCATGTTTGCCAGATGGATGGGAAGAGCCTAAGTGGTACCACTGGAGAAACAGTTATTGAAGTTGCTGATATGGACAGCAATCCTGAAGTGTGCTTGCAAATGTTGTCTTCACAAGGATGCCAGAGGATTGGGGAATGCTTGCAATCTGATGGTTCACCACTAAACATCCATGCTCCCGAGAATGATTGGTGTGATGAAAAACTTGACAGTAATTCATCCAAGTACAATCCAGAGGTCGTGGAAGACGATATTGATGTCTTGACTAATAATAATAGTGACGGTGGACAGCATATAGTTCCTGGGATTGAAAGTGACCGTAATCTGGAGGAAGCTACTATTCAAGTGAACCACAACTGTGTTGAACTACTTGCATCACCCTTGCCTTCTCAGCCCCCTAATTCTGAAAAGGATGAATTTTATGGGATGTTGAATGGAGCAGATATTCCAATAAAGGATATTAGTTCTGTTAATTCATGTAGTGTCGGTGATCAAGACAACAATGACATAGAGAAAGTTGGCTGTGTTTCTGAAGTTAAATGTCCTGAAACAGTTATCATGTCTTCTAAGAGGAGTGGCCGAAGGAGAACGTCAAGCCAAAAAGCTGTGACAAAAAGGGCATCCAGGAAGAGCAAAAAAAAGGTGCCAGAGCCACTGATTTTTGACACTGCAAGAAGGAGGAGAAGCTCTATATCTAGGCCTGCTCGTCCCTCACCCTGGGGATCACTGGGCTATATTATTCAGTCATTTGAAGAAATTGATGATGTTCTGGTAAATCAAAGCCAGAAGCAAGGAAATGAGAAATCTAAAGGTAATCAAAGAGGTACCAAGAGGAATAAGAAACAGCCAAGTGAAAGTTCACATAGATCAAGAAAAGGGACCCAAGGAAAATGTGCTACTTCCACTTCAACCAACCGTATTCGTCTGAAGGTTAAATTAGGGAAGAATGTGGGCCATAATTTTCTGAACATTGTGGTTCCCGATATTGTGGATTCATCATTGTCTGCAAAGGGTGTCAATTGCAATTATGGTAATGAATCATATTGGGAAGGCAATTTGGAATTTCCACCATCAACCCTTGGTGTTGATGAACAAAAGCCCGAAGAGGGGCCTTTAAGAAAGATTTTCTGCTACAGCAGGAATCAGGATAAAGAAGAGAAATGTCCTGATGCTGATGCTGATGCTTCTGTTGTGAATGAACATTGTGCTAATAATGACTCAAGTTGCACCATTACTATGGACAAGCCAAAACTTGCAGATGATAATCTTTGTGTTTCCTCCCATTTGGTTGAACCTGTAGAAAGGGCAAGTGATGCCAGGAATTCGGATCCTGGAACTTCACCTGATTCAGAAGTGATAAATTCAATTTTAGATATTCAAGTTGGAGCAATACGTCAGGAAATTTTGCAGGACTCAGTTTTGGCATCTTTAGAAGATTTTTCTGCTTCTGAAAATGCTGCCAGTAGTAAGAAAGGAAGGAAGAAGGAGAAGTCCTGTCAGGCAGTTAATTGTTCTGAGGAAGGTGGCACAGGTGCTTCTGCTTGCAGTAACAGGTCCAAGTCATCAAAGAAGCATGGAAGAAGACAGAACGTGGACAATCAACTTGGTCCTGAGATTGAACTTCCAGAAGAGGCTTCGAAAGCAGACGACATTCTCAAAGATAAAGAATGTTGCAGAACAAATGTTGGCAGTGTGTTTCCTGAATCAGAGAATTCAAAAATATTTCTTCCTTCTCAATCTGCAAAGAAGAAACATTCTAAAGGTTCCAAATCTATTAAAACAAGCAAAGGGAAGGTGAAGGCTCCTGGCTCAAAAAACAAAACAAAGACTGCTTCAAATGAGAGGGTTTACCAACGGAAGTCTTTGAATAAGAGTAAAATTAAGGAGGCTCTATGTGACCGAGTTGTGACTGAAACAGAAAGTCACCAAATAGTAGGAAATTGCATTGTAGACAAGCCTGTGAAAAGCGATGACATCATTGCATCCACAGTGGCAGTAAATTTGAGTGTGGTACAGGGTGCTGTGAATGAGCAGTATATGCCTCCTCGCAATGCTTGGGTGCTCTGCGATGATTGTCATAAATGGCGACGCATACCGGCTTCTCTTGTTGATAGTTTAGGACATGCAAGTTGCACATGGACTTGTAAGGACAATGTGGATAAAGCTTTTGCTAATTGTTCAATCCCACAAGAAAAGTCAAATGCAGAGATTAATGCAGAGTTGGAAATATCAGATGAATCTGGGGAAGAAAATGCTTCCAATAAACGGCTAACTTACAGGGAGTTGGAGAGTTTCCATCCAACAACAGTGACTGCTGTTCCTCAAGAGAACAAATTTGCTTCCATTAGCAGCAATCAGTTTTTGCACCGCAGCCGTAAAACTCAGACTATTGATGAGATAATGGTTTGTCATTGCAAACCACCTTTGGATGGTCGGTTAGGCTGTGGAGATGAATGCTTGAACCGAATGCTCAATATTGAATGTGTTCGAGGTACATGTCCATGTGGGGACCTCTGTTCTAATCAACAGTTCCAGAAGCGCAAGTATGCTAAATTACAGTGGTTGCGATGTGGAAAGAAAGGTTATGGGCTACAGTTGCTTGAGGATATATCAAAAGGACAATTTCTCATTGAGTATGTTGGAGAGGTCCTTGACATGCATGCTTATGAGGCACGCCAAAAGGAATATGCATTGAATGGTCATCGGCATTTTTACTTCATGACACTAAATGGCAGTGAGGTCATAGATGCATGTGGAAAGGGAAATTTGGGGCGTTTCATTAACCACAGTTGTGATCCAAATTGCCGCACGGAGAAGTGGATGGTGAATGGAGAAATCTGCATTGGGCTCTTTGCACTAAGGGATATTAAGAAGGGGGAAGAGGTGACATTTGACTACAATTATGTAAGGGTATTTGGGGCTGCTGCAAAAAAATGTTATTGTGGTTCTTTCCAATGTCGAGGTTATATAGGTGGAGACCCCCTCAATTCTGATGTCATTATTCAAAGTGATTCAGATGAAGAATTCCCAGAACCAGTGATGCTTCGTGCAGATGGTAGAAGTTGGAATAATAACTTGCCAACTGCAGTTAGTTCGTTGGATGTTGCTAAAATGCAACCCTCAGAGCATACAAAAGGGATTAGGGATAAGAGAGATCAACCTATCAGAATTGCTACTGAACCGAAGATTTCAGAAGAAAAGGTGGATACTCTTAAGCTTTCTGCCTCGCAGATTTCAGAAGAAAGAGAGGATCCTCTTGATCTTTCTGCATCGAAGATTGCAGAAGAAAAAGAAGATCCTCTTAACCTTTCTGCCTCTACCATTTCACCATTGCACAGTTCATTGGAATTCGAAGACTCAAAGGTAGCATCACCTACTCCACTGCTGGATATTACCCATCAGACTGAAGATGTGACGAGCAAACCTGTCTTTGTTGATCAGACAGAAATTTCTCTTGTGGACAATATTCCTGACAAAAATACATGCTCTATTGAGCAGGAGGCAAAGTTATCAGTTGATGACATTGATGCTCCTAAGAAGTCCAAGCTGGATGCTGTTGAAGATAAGGAAGTGTATATAAAATCGCATCCTCGGATGAAAACTTCACGTAAACCAGGTTCCATCAAGAAAGGAAAAGTTAGCTCGGTCGAAAAAATTCAAATAACTAACAGGTCCCAGATTTCCTCTGTGAAGCCCAAGCGATTGATTGAAGGCTCTCCGGGTAACCGTTTTGAAGCAGTTGAGGAGAAGCTTAATGAACTTCTGGATGCTGAAGGGGGAATTAGCAAAAGAAAAGACGCCCCTAAAGGGTACTTAAAGCTTCTTCTTCTGACTGCTGCATCGGGTGCAAGTGCTAGTGGTGAAGCAATTCAGAGCAATCGAGATCTTTCAATGATCCTTGATGCTCTTTTGAAGACAAAGTCACGAGTAGTATTGACTGACATAATAAACAAAAATGGTTTGCGGATGCTGCATAACATAATGAAGCAATATAGAAGTGACTTCAAAAAGATACCTATTCTTCGGAAGCTTTTGAAGGTCCTAGAATACTTGGTGACGAGAGAGATACTCACCTCAGAGCATATTAATGGAGGTCCTCCTTGCCCTGGAATGGAAAGTTTGAGGGAGTCTTTACTGTCACTGACAGAGCATGATGACAAACAGGTACATCAAATTGCACGAAGTTTTCGGGACAGATGGTTCCCCAGACATACTAGAAAATTTGGTTACTCTGAGAGGGAGGATGGAAGATTGGAAGGTTACAGGGGTTCCAACTGCAGTAGGTTTACAGCATTACACAGTTATCGGCATGATCAGGATTCCAGACCCACGGATGCAATTGATTGTGTGAAGCAGTTGATGCCTACATCTTTGCCAGATGCTCATCCTGCAGAGGTCTGTTCTGTGGCTTCCACAGCTGGTCACTCATTGAATGGACAAAAAGTCCGTAAGCGTAAGAGCCGATGGGATCAGCCTGCAGACACAAGCCTAGATCTGAGATCCAAGGAGCAGAAGCTTGAATCAGCATCGGTGCAGCAATTATATTCCAGCCAATTAAATAGTGCTGGAGTGGCGTCAATGTTGATAGACAAACTAAACAATGATGATAAGGACGTCTCCCTCTCTGATTCTGTTGGAGTACGTTGTCGGCAAGATGAAGATATTAGGGCAGACAGTGCAGTGCAGAACATCCCTGAAGATATTCCTCCTGGATTTTCATCTCCCTTCAATCCCCACGTGGCTTCCTCAAGTGCTTTTTCAACAGCTTTAGATCCTCAACAGAATATTAGCAATTTGAGTTGTGCTTTTTCCACGGTTGGGCACCCACAGGAAAGATTTATTTCTCGCATGCCTGTGTCCTATGGAATTCCATTTTCTATCATTGAGCAATGTGGAACATCCCGTACAGAGAATCTGGAGTGTTGGGATGTTGCTCCTGGAGTGCCTTTTCATCCTTTTCCACCCCTGCCACCATATCCTCGAGGTAAGAGAGGCCCGCCTACATCTGCCTGTGGTAGTGCAGTTGGACAGTCCTCCCAAGAAGGGCAGGTCAACAGCCATGATTCTCGAGCTTCTTTCTCAGAAGAAAGCCCTCCTAGTACAAGTACTAATTACCAACCAGATTTGTGCACTCCATCAAACAACCAACAGATAATACCGAAACGGGCAAAAGAATTGTCTTATGACTTGGGAAGAAGGTACTTTAGGCAGCAAAAGTGGCGTAATACAAAGTATGGCCCACCTTGGTTACAGAGAAGAAATCAGTGGGGATGCCAGGGAAACTTCAGGGGTGGGGTGAGCACTGTAGGTGATGACAATATATCCAATGAAGAAATAAGTCCATATTGCTCGGATGAAGCAAGTGGTAGAGTGGATAAAGCTAATGATGATTTTTATCAGCATTTGCAGAATCAAAATCTGCATTGA 6240 42.71 MGSCDDPAVIGEPFCGSVTRLVGCLSQPLSKHQSRQEMASFPSNSSDGQMFEPDRGLGVTTTGVCTNASEPDTAGEEGICRGFEHADALLMDKSLDSDPCLNEDNEARNVRDRTLSLDMKESQDVDGLVDILGCKTTMEMMSLTGSLVDSVKREELDNNSCIIDASAKVERDDTVENGPILARTGTCTDDFKSPYVCEIVSNSASADGLACDFIQHNELQNDGAGCSFSEVADRITEASVEIEADMLNEMSPLQSGQILPIHVEQSVANCDRHVCQMDGKSLSGTTGETVIEVADMDSNPEVCLQMLSSQGCQRIGECLQSDGSPLNIHAPENDWCDEKLDSNSSKYNPEVVEDDIDVLTNNNSDGGQHIVPGIESDRNLEEATIQVNHNCVELLASPLPSQPPNSEKDEFYGMLNGADIPIKDISSVNSCSVGDQDNNDIEKVGCVSEVKCPETVIMSSKRSGRRRTSSQKAVTKRASRKSKKKVPEPLIFDTARRRRSSISRPARPSPWGSLGYIIQSFEEIDDVLVNQSQKQGNEKSKGNQRGTKRNKKQPSESSHRSRKGTQGKCATSTSTNRIRLKVKLGKNVGHNFLNIVVPDIVDSSLSAKGVNCNYGNESYWEGNLEFPPSTLGVDEQKPEEGPLRKIFCYSRNQDKEEKCPDADADASVVNEHCANNDSSCTITMDKPKLADDNLCVSSHLVEPVERASDARNSDPGTSPDSEVINSILDIQVGAIRQEILQDSVLASLEDFSASENAASSKKGRKKEKSCQAVNCSEEGGTGASACSNRSKSSKKHGRRQNVDNQLGPEIELPEEASKADDILKDKECCRTNVGSVFPESENSKIFLPSQSAKKKHSKGSKSIKTSKGKVKAPGSKNKTKTASNERVYQRKSLNKSKIKEALCDRVVTETESHQIVGNCIVDKPVKSDDIIASTVAVNLSVVQGAVNEQYMPPRNAWVLCDDCHKWRRIPASLVDSLGHASCTWTCKDNVDKAFANCSIPQEKSNAEINAELEISDESGEENASNKRLTYRELESFHPTTVTAVPQENKFASISSNQFLHRSRKTQTIDEIMVCHCKPPLDGRLGCGDECLNRMLNIECVRGTCPCGDLCSNQQFQKRKYAKLQWLRCGKKGYGLQLLEDISKGQFLIEYVGEVLDMHAYEARQKEYALNGHRHFYFMTLNGSEVIDACGKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKKGEEVTFDYNYVRVFGAAAKKCYCGSFQCRGYIGGDPLNSDVIIQSDSDEEFPEPVMLRADGRSWNNNLPTAVSSLDVAKMQPSEHTKGIRDKRDQPIRIATEPKISEEKVDTLKLSASQISEEREDPLDLSASKIAEEKEDPLNLSASTISPLHSSLEFEDSKVASPTPLLDITHQTEDVTSKPVFVDQTEISLVDNIPDKNTCSIEQEAKLSVDDIDAPKKSKLDAVEDKEVYIKSHPRMKTSRKPGSIKKGKVSSVEKIQITNRSQISSVKPKRLIEGSPGNRFEAVEEKLNELLDAEGGISKRKDAPKGYLKLLLLTAASGASASGEAIQSNRDLSMILDALLKTKSRVVLTDIINKNGLRMLHNIMKQYRSDFKKIPILRKLLKVLEYLVTREILTSEHINGGPPCPGMESLRESLLSLTEHDDKQVHQIARSFRDRWFPRHTRKFGYSEREDGRLEGYRGSNCSRFTALHSYRHDQDSRPTDAIDCVKQLMPTSLPDAHPAEVCSVASTAGHSLNGQKVRKRKSRWDQPADTSLDLRSKEQKLESASVQQLYSSQLNSAGVASMLIDKLNNDDKDVSLSDSVGVRCRQDEDIRADSAVQNIPEDIPPGFSSPFNPHVASSSAFSTALDPQQNISNLSCAFSTVGHPQERFISRMPVSYGIPFSIIEQCGTSRTENLECWDVAPGVPFHPFPPLPPYPRGKRGPPTSACGSAVGQSSQEGQVNSHDSRASFSEESPPSTSTNYQPDLCTPSNNQQIIPKRAKELSYDLGRRYFRQQKWRNTKYGPPWLQRRNQWGCQGNFRGGVSTVGDDNISNEEISPYCSDEASGRVDKANDDFYQHLQNQNLH 2079
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19046855 19071314 + CcPI632755_08g007420.1 Cco08g0742 185216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0742 2079 MobiDBLite consensus disorder prediction 847 890 - -
Cco08g0742 2079 MobiDBLite consensus disorder prediction 774 790 - -
Cco08g0742 2079 ProSiteProfiles SET domain profile. 1121 1238 IPR001214 GO:0005515(InterPro)
Cco08g0742 2079 ProSiteProfiles AWS domain profile. 1069 1119 IPR006560 GO:0005634(InterPro)|GO:0042054(InterPro)
Cco08g0742 2079 SMART shorttest3 1069 1120 IPR006560 GO:0005634(InterPro)|GO:0042054(InterPro)
Cco08g0742 2079 FunFam Histone-lysine N-methyltransferase 949 1010 - -
Cco08g0742 2079 PANTHER SET DOMAIN PROTEINS 416 1942 IPR050777 GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0046975(PANTHER)
Cco08g0742 2079 Pfam CW-type Zinc Finger 957 1003 IPR011124 GO:0008270(InterPro)
Cco08g0742 2079 Gene3D - 954 1014 - -
Cco08g0742 2079 FunFam Histone-lysine N-methyltransferase 1016 1276 - -
Cco08g0742 2079 MobiDBLite consensus disorder prediction 484 500 - -
Cco08g0742 2079 Pfam AWS domain 1083 1118 IPR006560 GO:0005634(InterPro)|GO:0042054(InterPro)
Cco08g0742 2079 MobiDBLite consensus disorder prediction 1747 1768 - -
Cco08g0742 2079 MobiDBLite consensus disorder prediction 530 574 - -
Cco08g0742 2079 MobiDBLite consensus disorder prediction 1754 1768 - -
Cco08g0742 2079 SMART set_7 1121 1244 IPR001214 GO:0005515(InterPro)
Cco08g0742 2079 MobiDBLite consensus disorder prediction 768 817 - -
Cco08g0742 2079 MobiDBLite consensus disorder prediction 1926 1985 - -
Cco08g0742 2079 MobiDBLite consensus disorder prediction 1942 1985 - -
Cco08g0742 2079 ProSiteProfiles Post-SET domain profile. 1246 1262 IPR003616 -
Cco08g0742 2079 CDD SET_SETD2 1120 1262 IPR044437 GO:0046975(InterPro)
Cco08g0742 2079 Pfam SET domain 1132 1238 IPR001214 GO:0005515(InterPro)
Cco08g0742 2079 ProSiteProfiles Zinc finger CW-type profile. 951 1005 IPR011124 GO:0008270(InterPro)
Cco08g0742 2079 Gene3D SET domain 1017 1278 IPR046341 -
Cco08g0742 2079 MobiDBLite consensus disorder prediction 541 563 - -
Cco08g0742 2079 MobiDBLite consensus disorder prediction 457 509 - -
Cco08g0742 2079 SUPERFAMILY SET domain 1050 1259 IPR046341 -
Cco08g0742 2079 MobiDBLite consensus disorder prediction 465 483 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0742 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0166 Cco-Chr2:1645485 Cco08g0742 Cco-Chr8:19046855 8.10E-12 dispersed
Cco06g1458 Cco-Chr6:25047938 Cco08g0742 Cco-Chr8:19046855 5.80E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g211 Blo01g01308 . Bda01g00676 . Bpe02g00629 . . Bma01g02090 Cmo04g02507 Cmo15g00659 . . . . . . . Bhi04g01862 Tan11g1236 . . Hepe02g2211 . Lcy10g1258 Cla08g00625 Cam08g1044 Cec08g0630 Cco08g0742 Clacu08g0751 . Cre08g0560 . . Cone17ag0818 Cone20ag0423 . . . Cme03g00490 . . . . . . . . . . . . . Car04g02314 Car15g00596 Cpe01g02076 . . . . . . . . . . . . . . . Lsi08g00466 . Chy03g00750 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003381 1 5 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 2 1 6 3 1 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59759 PF00856 SET 3.70E-18 No_clan Cco TR