Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0754 ATGGGACGTTGGACGAAGACGCTTGTAAGAGTTTTGCTGATGATCATATTATCATCAGCCTCAGCGGCGGCTGTCGTAGTAGCTTCATCACAAGCCTTACCCGGCTGCGACGAATGGTGTGGCGACTTGCAAATTCCATATCCATTCGGCGTAAAAGAAGGGTGTTATCTGAATGAAACGTTCTTAATTACGTGCAACAAAAGCAATAGCCCTCCAAAAGCGTTTCTAATGGACACCAATATTAGCGTTACTAATGTGTCACTCAACGGCGAGCTACACATATTGCAGCCCATAGTGCGAGATTGCTACGAGGAAGCGCAAGTAAGTGGTCCTTTTGTCCCCAACACAACCAATCTTTCTTTACCAGCGATGTTACCAATTGGTGATGGCAAAAACAAGTTCATTGCCATTGGCTGTGATACTTTTGGTTTAATTGGTGGGATGTTAAATGGGAGTGGTTATGTAAGTGGGTGTATTTCCATGTGTTTAAACGACAGTACGATTGTTAATGGGTCGTGCTCTGGTAATGGGTGTTGTCAATTGGAGATTCCAAATGGGTTGAGGAATTTGAGTTTGGCAGTGGGTAATTTCTTTAATCATTCTTTGGTGAAGAATTTTAATCCTTGTGGGTACGCTTTTGTGGTTGGAGATGAGGGGTTTGAGTTTGAGTCCAGGTATATTAGGAGTTTTGAAGATGTTGAAGTTGAGGTTGTGATTGGTTGGGCTATTGGAAATGAAAGTAATTATGCAAATGTGTGTGGATTAAATAGTGAAAGGAATAGTAGTTTCTCTAATGATGGAGCTGAATTTCGTTGCCAATGCTTGGATGGTTTTCAGGGGAATCCATATCTCCCACTGGGTTGTCAAGGAATTGGAATAGGGTTCACAGTTTTATTAATTGGTAGCACATGGATATTCTTGGGTTATAAAAAGTGGAAGTTCATCAGAACGAAAGAAAAATTTTTCAAAGAAAATGGAGGTTTCATACTTCAACGACAACTTTCTCAATGGCAATCTCCCAATGAAATGGTCAGAATATTCACCCAAGAAGAGTTGGAGAAGGCCACAAACAACTACGACCAGAGCACTATCGTTGGCAAAGGTGGGTACGGCACTGTTTACAAAGGAGTCTTAGAAAATGGCTTGGCAGTGGCAATCAAGAAATCAAAATTTATAGACCAATCTCAAACTGACCAATTCATTAACGAAGTCATTGTTTTGTCTCAAATCAACCATCGCAATGTGGTTAGACTCTTGGGGTGTTGTTTAGAGACACAAGTCCCATTGTTGGTGTACGAGTTCGTAACCAACGGCACACTCTTCGAACATATCCATCACAAAACCAAGCATGCTTCTCTTTCATGGGAGGCTCGTTTGAAAATAGCTTTGGAGACTGCAGGTGTACTTTCGTATTTGCATTCTTCAGCTTCCACTCCAATTATCCATAGAGATATCAAGACCACCAACATACTTTTAGACGATAGTTACACAGCGAAAGTGTCTGATTTCGGGGCATCGAAGTTGGTTCCAATGGATCAAACTCAGCTATCCACGATGGTGCAAGGGACTCTAGGGTATTTAGACCCTGAGTACTTGTTGACAAGCGAGTTGACGGAGAAGAGCGATGTGTATAGCTTTGGAATAGTGTTGTTAGAGCTTATAACTGGGAAGAAGGCAGTGTGTTTTGATGGGCCAGAAGCGGAGAGGAATCTAGCGATGTACGTGCTTTGTGCAATGAAGGAAGATCGATTGGAAGAAGTTGTGGAGAAGGGAATGATGGTGAAAGAGGCAAATTTTGAGGAAATAAAAGAAGTGGCTAAGGTAGCAAAGAAATGCATAAAAATTAAAAGGGAGGAGCGACCCAGCATGAAGGAAGTAGCTATGGAGTTGGAGGGAGTTAGAGTAATGCAAGTTCAACGTTCATGGATGAATAATAATAATTTGTCCAACGCAGAGGAAATGGTATGTTTGTTAGATGTTAAAGCTTCAGACTCCAGCCATTTTGCTTCGAGTGGCACTATGAATACCCTTGGAGATAGCATAAAAACTCGAATTTTGTCACACATCCACCATGGAAGATGA 2082 41.64 MGRWTKTLVRVLLMIILSSASAAAVVVASSQALPGCDEWCGDLQIPYPFGVKEGCYLNETFLITCNKSNSPPKAFLMDTNISVTNVSLNGELHILQPIVRDCYEEAQVSGPFVPNTTNLSLPAMLPIGDGKNKFIAIGCDTFGLIGGMLNGSGYVSGCISMCLNDSTIVNGSCSGNGCCQLEIPNGLRNLSLAVGNFFNHSLVKNFNPCGYAFVVGDEGFEFESRYIRSFEDVEVEVVIGWAIGNESNYANVCGLNSERNSSFSNDGAEFRCQCLDGFQGNPYLPLGCQGIGIGFTVLLIGSTWIFLGYKKWKFIRTKEKFFKENGGFILQRQLSQWQSPNEMVRIFTQEELEKATNNYDQSTIVGKGGYGTVYKGVLENGLAVAIKKSKFIDQSQTDQFINEVIVLSQINHRNVVRLLGCCLETQVPLLVYEFVTNGTLFEHIHHKTKHASLSWEARLKIALETAGVLSYLHSSASTPIIHRDIKTTNILLDDSYTAKVSDFGASKLVPMDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVCFDGPEAERNLAMYVLCAMKEDRLEEVVEKGMMVKEANFEEIKEVAKVAKKCIKIKREERPSMKEVAMELEGVRVMQVQRSWMNNNNLSNAEEMVCLLDVKASDSSHFASSGTMNTLGDSIKTRILSHIHHGR 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19306512 19311406 - CcPI632755_08g007540.1 Cco08g0754 185228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0754 693 ProSiteProfiles Protein kinase domain profile. 359 643 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g0754 693 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g0754 693 ProSitePatterns Protein kinases ATP-binding region signature. 365 388 IPR017441 GO:0005524(InterPro)
Cco08g0754 693 SMART serkin_6 359 633 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g0754 693 Pfam Wall-associated receptor kinase galacturonan-binding 36 90 IPR025287 GO:0030247(InterPro)
Cco08g0754 693 Gene3D Phosphorylase Kinase; domain 1 331 434 - -
Cco08g0754 693 CDD STKc_IRAK 365 632 - -
Cco08g0754 693 Gene3D Transferase(Phosphotransferase) domain 1 435 656 - -
Cco08g0754 693 FunFam Wall-associated receptor kinase 2 329 434 - -
Cco08g0754 693 FunFam Wall-associated receptor kinase 2 435 654 - -
Cco08g0754 693 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 32 644 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Cco08g0754 693 Pfam Protein tyrosine and serine/threonine kinase 363 630 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g0754 693 SUPERFAMILY Protein kinase-like (PK-like) 337 630 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0754 Cco-Chr8:19306512 Cco08g0758 Cco-Chr8:19384463 4.50E-245 dispersed
Cco08g0754 Cco-Chr8:19306512 Cco08g0756 Cco-Chr8:19352990 7.00E-206 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87019 PF07714 PK_Tyr_Ser-Thr 2.00E-48 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0754 - - - 0.0