Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0755 ATGGATTCAAATAGCTCTCAATTAGAGTCCCGAGAGCAAGCACCCAATCAACAACTTCCTTTTCTCCACACTTCCCAATCGACCCATAAAACCCTCTTCATACCTTCAAAATTCATTTGGCCAAAAGGGGATCTAGTAGAAGCTTATGAAAAGCTGAGTGAACCACATGTCGACCTTGAGGGCTTCCTCAAGGGCGACAAAAAGGCAACCATTGAAGCCTCCAAGATCGTAAGGAAAGCCTGCTTGAAACATGGCTTCTTCCAAGTTACGAACCATGGTGTCGATCAAAATCTGTTAGCCACTGCCCTTGATAAAATGGGCCCTCTTTTTAACCTTCCTTTGAGTCTAAAGACTAGGGCTTCCCAAGCCCGGGCTGCCAAAATGTGGGGCTTTTCCACTGCTCATTCTAATCGCTTTTCCTCAAAGCTGCCATGGAAGGAAACTTTCTCCTTTGAGTTTGACCATTCTTGCAATATCTCCAATAATGAACCACCTGTTGTTCATTTCTTCTCTTCCACTTTAGGCAAGGAATTTGAAGAAATAGGGATTGTATATGAAAAGTACTGCCAAGCAATGAGGGAGCTATCACTAGCATTAACGGAGGTTTTGGGGATAAGTTTGGGAGTGGAGAGATCATATTTCCGCAAGTTTTTCGAAGATGGAAGCTCCATAATGCGATTGAACAGCTACCCAATTTGCGAACAAGGCGGCGTAGCCCTTGGCACTGGCCCTCACTGTGATCCAACAGCCTTGACTATCCTCCACCAGGATCAAGTTGGTGGCCTCGAAGTCTTCGCTAACAACAAATGGCATACTGTTCCTCCCTCTCCAAATTCACTCGTTGTTAACATTGGTGATGTTTTCATGGCGCTGTGTAATGGAGAATACAAAAGCTGCGTGCATAGGGCGGTGGTGAACAAGCACAAGGAGAGGAGGTCATTGGCATTTTTCCTTTGTCCGAGGAAAGACAAGGTGGTGAGGCCGCCGGAGAAACTTGTTGCCGGCGACGGGTCAAGAAAGTATCCGGATTTTTCCTGGTCGGAGCTGTTTGAATTCACACAAAAGCACTACAGAGCTGATGCTGTAACTCTTCAAAACTTCAGCAAATGGGTGGTGTCATCGAGGCCATGTGGTGTTTAA 1140 45.96 MDSNSSQLESREQAPNQQLPFLHTSQSTHKTLFIPSKFIWPKGDLVEAYEKLSEPHVDLEGFLKGDKKATIEASKIVRKACLKHGFFQVTNHGVDQNLLATALDKMGPLFNLPLSLKTRASQARAAKMWGFSTAHSNRFSSKLPWKETFSFEFDHSCNISNNEPPVVHFFSSTLGKEFEEIGIVYEKYCQAMRELSLALTEVLGISLGVERSYFRKFFEDGSSIMRLNSYPICEQGGVALGTGPHCDPTALTILHQDQVGGLEVFANNKWHTVPPSPNSLVVNIGDVFMALCNGEYKSCVHRAVVNKHKERRSLAFFLCPRKDKVVRPPEKLVAGDGSRKYPDFSWSELFEFTQKHYRADAVTLQNFSKWVVSSRPCGV 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19334531 19337113 - CcPI632755_08g007550.1 Cco08g0755 185229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0755 379 MobiDBLite consensus disorder prediction 1 21 - -
Cco08g0755 379 Pfam 2OG-Fe(II) oxygenase superfamily 223 320 IPR044861 -
Cco08g0755 379 Pfam non-haem dioxygenase in morphine synthesis N-terminal 55 155 IPR026992 -
Cco08g0755 379 Gene3D - 22 352 IPR027443 -
Cco08g0755 379 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 34 350 IPR050231 GO:0009416(PANTHER)|GO:0009686(PANTHER)|GO:0009826(PANTHER)|GO:0009908(PANTHER)|GO:0016706(PANTHER)|GO:0045544(PANTHER)
Cco08g0755 379 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 221 320 IPR005123 -
Cco08g0755 379 PRINTS Isopenicillin N synthase signature 308 326 - -
Cco08g0755 379 PRINTS Isopenicillin N synthase signature 77 94 - -
Cco08g0755 379 PRINTS Isopenicillin N synthase signature 245 266 - -
Cco08g0755 379 SUPERFAMILY Clavaminate synthase-like 33 359 - -
Cco08g0755 379 FunFam Gibberellin 20 oxidase 2 25 358 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0755 K05282 - - csv:101209625 691.034
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1272 Cco-Chr4:28069501 Cco08g0755 Cco-Chr8:19334531 2.00E-114 dispersed
Cco05g0923 Cco-Chr5:8017324 Cco08g0755 Cco-Chr8:19334531 5.30E-91 dispersed
Cco06g0021 Cco-Chr6:213924 Cco08g0755 Cco-Chr8:19334531 4.30E-93 dispersed
Cco08g0755 Cco-Chr8:19334531 Cco10g0081 Cco-Chr10:736292 1.90E-24 dispersed
Cco08g0755 Cco-Chr8:19334531 Cco01g0558 Cco-Chr1:5449038 5.10E-102 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g197 . . . . . Bpe04g00544 . . . . . . . . Sed01g0939 . . Bhi04g01851 Tan11g1219 Cmetu03g0027 . Hepe02g2737 . . Cla08g00640 Cam08g1059 Cec08g0644 Cco08g0755 Clacu08g0766 . Cre08g0572 . . . . . . . Cme03g00462 . . . . . . . . . . . . . . Car15g00590 . . . . . . . . . . . . . . . . Lsi08g00487 . Chy03g00549 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014001 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 24