Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0756 ATGGCGGCGACAGCGGCGGTAGCTTCTCAAGCCTTACCCGGGTGCGATGAATGGTGTGGTGACGTGCAAATTCCATATCCATTCGGGACGAGGGAAGGGTGTTATCTGAATGAAACATTCTTCATTGAGTGTAACACAACTCATTACGATTCTCCAAAGGCATTTCTAACGGGCGGCAACGTTAATGTTACAAATATATCAATCTCGGGGGAGCTTCAAATCTTGAACTTAATGGCCCAAGATTGCTACCCGCCAAAAATTGGTGCTGATGTTTTTTCCTCTATCTTTCTCCATATACCTGGGTACACTATTTCCAGTACTAAAAACAAGTTCATTGCTATCGGCTGCGATACTCTCGGTTTTATTTCCGGCCAAAGCAAAGAAGACCAGTCCTTCACAACTGCATGTGTGGCATTGTGTGATGACATTAGCTCGGTTAAAGATGGGGCATGCTCTGGCAATGGGTGTTGTCAGTTGGAGATTCCCAGTGGCCTTAATTATTTGGAAATTCAGGTTAGCAGCTTAAGCAATCACACTAATGTGTCGAGTTTCAATCCTTGTGGAGTTACTGTGGGGTTCGCAGTTTTAGTAATTGGGAGTACATGGTTATACTTGGGTTACAAAAAGTGGAAGTTCATTAAACTGAAGAAGTTTTTTCAGAACAATGGCGGTTTAATGCTTCAACAACATCTTTCTCAATGGCAGTCATCCACTGACATGGTTAGAATTTTCACCCAAGAGGAGCTGGACAAGGCTACAAACAAGTACGACGAAACTGCAGTGGTCGGAAAAGGTGGTTACGGTACTGTTTACAAAGGAGTCTTAGATGATGGTTCGGTAGTTGCAATTAAGAAATCAAAATTGGTAGACCAATCTCAAACATCTCAATTCATTAATGAAGTCATGGTTCTGTCCCAAATCAACCACCGTAACGTGGTCAAGCTCTTAGGATGTTGTTTGGAGACACAAGTTCCATTGTTGGTGTACGAGTTCATCACCAATGACACACTTTACGACCACGTCCATGGAAAAGCCAACCAAGATTCTCTTCCATTGGAAGCTCGTTTGAGAATAGCTTCCGGAACTGCAGGGGTTATTTCATATCTTCATTCTTCAGCTTCCACTCCAATTATCCACAGAGATATCAAGACAACCAACATACTTTTAGACCATAATTATACTGCAAAGGTCTCTGATTTTGGTGCTTCCAAGTTGGTTTCCATAGATCAATCTCAGTTATCCACGATGGTGCAAGGAACTCTTGGATATTTAGACCCTGAATACTTGTTAACCAGCGAGTTGACAGAGAAGAGCCATGTGTACAGCTTTGGAATAGTGCTTCTAGAGCTTATAACAGGGAAGAAGGCAGTGAGTTTCGAGGGGCCAGAAGCGGAGAGGAACCTAGCCATGTATGTCCTATGTGCAATGAAGGAAGATCGTGTGGTAGAAGTTGTGGAAAAGGGAATGGCGACGGAAGCCAACATTGGGCAGATAAAAGAAGCGGCAAAGTTGGCAACAAAGTGTTTGAGAATAAGGGGGGAGGAACGGCCTAGCATGAAGGAGGTGGCCATGGAGTTGGAGGGGCTGAGAGTGTTGATTCAGGCTAATGAGAAATTGGAGAGCACAGGAGAGGCGATGGTGGGTTATTTGGTGCAATCCGATGGAGGTTCAGAATCAACATCCAACCAGTTTACTACGAGTGGGAGCACAAATGTTGTGGATGATAGTATGAAGGTCGAGATTTTGCCACTCATACATCATGGAAGATAA 1770 43.84 MAATAAVASQALPGCDEWCGDVQIPYPFGTREGCYLNETFFIECNTTHYDSPKAFLTGGNVNVTNISISGELQILNLMAQDCYPPKIGADVFSSIFLHIPGYTISSTKNKFIAIGCDTLGFISGQSKEDQSFTTACVALCDDISSVKDGACSGNGCCQLEIPSGLNYLEIQVSSLSNHTNVSSFNPCGVTVGFAVLVIGSTWLYLGYKKWKFIKLKKFFQNNGGLMLQQHLSQWQSSTDMVRIFTQEELDKATNKYDETAVVGKGGYGTVYKGVLDDGSVVAIKKSKLVDQSQTSQFINEVMVLSQINHRNVVKLLGCCLETQVPLLVYEFITNDTLYDHVHGKANQDSLPLEARLRIASGTAGVISYLHSSASTPIIHRDIKTTNILLDHNYTAKVSDFGASKLVSIDQSQLSTMVQGTLGYLDPEYLLTSELTEKSHVYSFGIVLLELITGKKAVSFEGPEAERNLAMYVLCAMKEDRVVEVVEKGMATEANIGQIKEAAKLATKCLRIRGEERPSMKEVAMELEGLRVLIQANEKLESTGEAMVGYLVQSDGGSESTSNQFTTSGSTNVVDDSMKVEILPLIHHGR 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19352990 19356298 + CcPI632755_08g007560.1 Cco08g0756 185230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0756 589 FunFam Wall-associated receptor kinase 2 332 547 - -
Cco08g0756 589 ProSitePatterns Serine/Threonine protein kinases active-site signature. 377 389 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g0756 589 Pfam Protein kinase domain 257 522 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g0756 589 Gene3D Phosphorylase Kinase; domain 1 227 331 - -
Cco08g0756 589 ProSiteProfiles Protein kinase domain profile. 256 533 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g0756 589 Gene3D Transferase(Phosphotransferase) domain 1 332 547 - -
Cco08g0756 589 CDD STKc_IRAK 262 529 - -
Cco08g0756 589 FunFam Wall-associated receptor kinase 2 226 331 - -
Cco08g0756 589 ProSitePatterns Protein kinases ATP-binding region signature. 262 285 IPR017441 GO:0005524(InterPro)
Cco08g0756 589 SMART serkin_6 256 533 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g0756 589 Pfam Wall-associated receptor kinase galacturonan-binding 15 70 IPR025287 GO:0030247(InterPro)
Cco08g0756 589 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 11 542 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Cco08g0756 589 SUPERFAMILY Protein kinase-like (PK-like) 234 527 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0756 Cco-Chr8:19352990 Cco08g0758 Cco-Chr8:19384463 4.70E-203 dispersed
Cco08g0754 Cco-Chr8:19306512 Cco08g0756 Cco-Chr8:19352990 7.00E-206 proximal
Cco08g0756 Cco-Chr8:19352990 Cco08g0757 Cco-Chr8:19364831 2.30E-290 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87020 PF00069 Pkinase 1.40E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0756 - - - 0.0