Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0757 ATGAGGCGTCCAATGGAGACGCTTGTGCAACTTACAGCAGTGAAAATAATAGCCATCTTATCAGCGGCTTTTGTCGTCGTAGCGGCCACATCGAACACAACCGTGACATTAGCTTCGAAAGCCTTACCTGGGTGCGACGAATGGTGCGGCGACGTGCAGATTCCATATCCGTTCGGAACGAGGAAAGGGTGTTATCTAAATGAAATGTTCTTCATTGAGTGTAACACAACTCATTACGATTCTCCAAAGGCATTTCTAGGGAGCGGTAACCTTAATGTTACAGATATATCCATCTCGGGGGAGCTCCAAATCATGTACCCCGCGGCCCAAGATTGCCACCCTCCAAATATTGGTCCTGATGTTTTTGCCTCCATCTTTCTCGATGTACCTGCCTACACTATTTCCAGTTCCAAAAACAAGTTCATTGCTATCGGCTGCGATACTATGGCTGGTTTTTCCGGTCGAGACCCAGAAGGGCAAACCTTTAGAACTGCATGTGTGGCGTTGTGTCATGATATTAGTTCTGTTAAAGATGGGGCATGCTCTGGCAATGGGTGCTGTCAGTTGGAGATTCCCAGTGGCCTTAATTATTTGGAGTTTTCGGTCAACAGTTTAGACAATCACATTAATGTGTCGAGTTTCAATCCTTGTGGGTATGCCTTTGTAATTGAACAAAACAACTTCAACTTCTCTTCAAAGTACATCCGCAATTTTCCTGAAAAGAGAATTTCGGGAGTGCTTGATTGGGCCATTAGTAACACAACTTGTGTAACGGCACAGAACAAAACTAATTGTATATGTGGCTCAAATAGCACAAAGGTTGACTTGCTTGATGGTCGATCTCAATATCGTTGCCAGTGCTTGGAAGGCTTTGAGGGGAATCCATATCTCCCCCAAGGTTGTCAAGGAGTTACTGTGGGGTTCACAGTTTTAGTAATTGGGAGTACATGGTTATACTTGGGTTACAGAAAGTGGAAGTTCATTAAACTGAAGGAGAAATTTTTTGAGAACAATGGTGGTTTGATGCTTCAACAGCATCTTTCTCAATGGCAATCATCCACTGACATGGTTAGAATTTTCACTCAAGAGGAGCTGGACAAGGCTACAAACAAGTACAACGAAAGTGCAGTGGTTGGAAAAGGTGGCTACGGTACTGTTTACAAAGGAGTTTTAGACGACGGTTCGGTAGTTGCAATCAAGAAATCAAAATTGGTGGACCAATCCCAAACATCTCAATTCATTAACGAAGTCATTGTTCTGTCCCAAATCAACCACCGTAATGTGGTCAAGCTCTTAGGATGTTGTTTAGAGACAGAAGTTCCATTGTTGGTGTATGAGTTCATCGCCAACGGCACACTTTACGAATATGTCCATGATAAAACCAATGATCGTCATTCCCTTTCATGGGAAGCTCGTTTGAGAATAGCTTCAGAAACTGCAGGGGTGATTGCATATTTGCATTCTTCAGCTTCCACTCCCATTATTCATAGGGATATCAAGACAACCAACATACTTTTAGACCATAATTATACTGCAAAGGTCTCTGATTTTGGTGCTTCCAAGTTGGTTCCCATAGATCAATCTCAGTTATCCACGATGGTGCAAGGAACTCTTGGATATTTAGACCCTGAATACTTGTTAACCAGCGAGTTGACTGAGAAGAGCGATGTGTACAGCTTTGGAATAGTGCTTCTAGAGCTTATAACAGGGAAGAAGGCAGTGAGTTTCGAGGGGCCAGAAGCGGAGAGGAACCTAGCCATGTATGTCCTATGTGCAATGAAGGAAGATCGTGTGGTAGAAGTTGTGGAAAAGGGAATGGCGACGGAAGCCAACATTGGGCAGATAAAAGAAGCGGCAAAGTTGGCAACAAAGTGTTTGAGAATAAGGGGGGAGGAACGGCCTAGCATGAAGGAGGTGGCCATGGAGTTGGAAGGGCTGAGAGTGTTGATTCAGGCTAATGAGAAATTGGAGAGCACAGGAGAGGCGATGGTGGGTTATTTGGTGCAATCCGATGGAGGTTCAGAATCAACATCCAACCAATTTACTGCGAGTGGGAGCACAAATGCTGTGGATGATAGTATGAAGGTTCACATTTTGCCATTGATCCATAATGGAAGATGA 2121 43.94 MRRPMETLVQLTAVKIIAILSAAFVVVAATSNTTVTLASKALPGCDEWCGDVQIPYPFGTRKGCYLNEMFFIECNTTHYDSPKAFLGSGNLNVTDISISGELQIMYPAAQDCHPPNIGPDVFASIFLDVPAYTISSSKNKFIAIGCDTMAGFSGRDPEGQTFRTACVALCHDISSVKDGACSGNGCCQLEIPSGLNYLEFSVNSLDNHINVSSFNPCGYAFVIEQNNFNFSSKYIRNFPEKRISGVLDWAISNTTCVTAQNKTNCICGSNSTKVDLLDGRSQYRCQCLEGFEGNPYLPQGCQGVTVGFTVLVIGSTWLYLGYRKWKFIKLKEKFFENNGGLMLQQHLSQWQSSTDMVRIFTQEELDKATNKYNESAVVGKGGYGTVYKGVLDDGSVVAIKKSKLVDQSQTSQFINEVIVLSQINHRNVVKLLGCCLETEVPLLVYEFIANGTLYEYVHDKTNDRHSLSWEARLRIASETAGVIAYLHSSASTPIIHRDIKTTNILLDHNYTAKVSDFGASKLVPIDQSQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFEGPEAERNLAMYVLCAMKEDRVVEVVEKGMATEANIGQIKEAAKLATKCLRIRGEERPSMKEVAMELEGLRVLIQANEKLESTGEAMVGYLVQSDGGSESTSNQFTASGSTNAVDDSMKVHILPLIHNGR 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19364831 19368451 + CcPI632755_08g007570.1 Cco08g0757 185231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0757 706 FunFam Wall-associated receptor kinase 2 342 447 - -
Cco08g0757 706 Pfam Wall-associated receptor kinase galacturonan-binding 45 100 IPR025287 GO:0030247(InterPro)
Cco08g0757 706 Pfam Protein tyrosine and serine/threonine kinase 376 643 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g0757 706 CDD STKc_IRAK 378 646 - -
Cco08g0757 706 SMART serkin_6 372 650 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g0757 706 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 41 659 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Cco08g0757 706 ProSitePatterns Serine/Threonine protein kinases active-site signature. 494 506 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g0757 706 Gene3D Phosphorylase Kinase; domain 1 343 447 - -
Cco08g0757 706 Gene3D Transferase(Phosphotransferase) domain 1 448 664 - -
Cco08g0757 706 SUPERFAMILY Protein kinase-like (PK-like) 350 644 IPR011009 -
Cco08g0757 706 ProSitePatterns Protein kinases ATP-binding region signature. 378 401 IPR017441 GO:0005524(InterPro)
Cco08g0757 706 ProSiteProfiles Protein kinase domain profile. 372 650 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g0757 706 FunFam Wall-associated receptor kinase 2 448 664 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1119 Cco-Chr3:20944468 Cco08g0757 Cco-Chr8:19364831 5.20E-99 dispersed
Cco06g0232 Cco-Chr6:2458378 Cco08g0757 Cco-Chr8:19364831 9.50E-37 dispersed
Cco08g0757 Cco-Chr8:19364831 Cco08g0759 Cco-Chr8:19398422 1.90E-227 dispersed
Cco08g0756 Cco-Chr8:19352990 Cco08g0757 Cco-Chr8:19364831 2.30E-290 tandem
Cco08g0757 Cco-Chr8:19364831 Cco08g0758 Cco-Chr8:19384463 8.60E-244 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87021 PF07714 PK_Tyr_Ser-Thr 1.40E-48 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0757 - - - 0.0