Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0758 ATGAGACGTCCAACCGCCGAGACGCTTGTGGTTCACATAGCCATCTTTTCAGCGGCGGTGGCGGCGACAGTAGCTTCGCAAGCCAAACCCTGGTGTGAAAGTAAGTGTGGGAACTTGGAAATTCCATATCCGTTCGGGATGAAGGAAGGGTGTTATCTCAACATTAATTTCTCCGTCACCTGCAAAACAAATCATTTGGACTCCCCAAAGGCATTTCTAATGAACAGCAACATTGAAGTAACCAATATATCCCTCTATGGCGAGCTCAACATCTTGAACTACGTAGCCCGAGATTGCTACACAAAAGATGGCCTTCCTGACATCAACAACAACAGACCAAGTCTCAGGGTGCCCATGTTCACAATTTCCAATACAAAGAACAAGTTAACCGTCGTCGGCTGCGATACTTACGCTTATATTTACGGTCAACTAGAGGGGGGATCCTACACAAGTGGGTGCATGGCGTTGTGTGGAAACAGTAGTAGAGCTATAAAAGATGGGTCCTGCTCTGGGAGTGGGTGCTGTCAATTGGAGATTCCCAAAGGCCTAAGAAATTTGGAGTTGGAGGTGAGAAGCTTCAAAAATCATACTCAAGTACACAGCTTCAATCCATGTGGGCATGCTTTTGTAGTCCAACAAGACAATTTTACTTTCTCTACTAAATATATTGAAAACTTCACGGAAGACAAAGTTCCGCTAGTGCTTGATTGGGGCATCAAAAAAGGTGCTTGCTTAACAGACCAATGTCCATGTGGACCAAACAGCAAAAGAAATAATAGCAAATCCCTTGATGGATCTGAATATTATTGTGACTGCTTGGATGGTTTTCGTGGAAATCCTTATCTCCCTCAAGGTTGTCAAGATATAAATGAATGCGAAGAGGGGTCCCATGACTGTGTACCCCAAGCTAAGTGTGAAGACAAACCAGGAAACTATATCTGCTCTTGTCCTGAGAAGTATGAAGGAGATGGAAAACTTGGGGGAACAGGTTGCAAACGAAAGTACTCCAACTCCATGTTCATTAAAATTATCATTGGAACTGGTGTGGGGTTTGTAGTTTTACTGATTGGTATCTCATGGTTATACTTGGGTTACAAGAAGTGGAAGTTCATCCAACAAAAAGAAAAGTTTTTCAAGAAAAATGGAGGCTCCATGCTTCAACAACACCTTTCTCAGTGGCAATCACCTACTGATACAGTCAGAATTTTCAGCCAAGAGGAGTTGGAAAAAGCTACAAACAAGTTCAATGAAAGCACAGTGGTAGGAAAAGGTGGCTACGGCACTGTTCACAAAGGAGTCTTAGACGACGGTTCGGTTGTCGCGATTAAGAAGTCACAATTAGTGGACCAATCCCAAACTTCCCAATTCATCAACGAAGTCATTGTTCTATCCCAAGTCAACCACCGTAATGTGGTCAAGCTTTTAGGATGTTGTTTGGAGACACAAGTTCCATTGTTGGTATACGAGTTCATCACCAATGGCACACTCTTTGACCACATCCATGACCGAACAAAGTATTCTAATCATCTTTCCTGGGAAGCTCGCTTGAGAATAGCTTCAGAAACTGCAGGGGTCATTTCATATTTGCATTCTTCAGCTTCTACACCAATTATCCACAGAGATATCAAATCCACTAACATACTTTTAGACCATAATTTCATTGCAAAGGTGTCGGATTTCGGCGCCTCGAAATTGGTTCCAATGGATCAAACTCAATTATCCACAATGGTGCAAGGAACCCTTGGATATTTGGATCCTGAATACTTGTTAACGAGCGAGTTGACGGAGAAGAGCGATGTGTACAGCTTTGGAATAATGCTTCTAGAGCTTATAACTGGGAAAAAAGCAGTGTGTTTTGATGGGCCAGAAGTGGAGAGGAATCTAGCCATGTATGTCCTTCGTGCAATGAAAGAAGATTGTTTAGTAGAAGTTGTAGATAAGGAAATGATGACAGACGAAGGGAAGTTGAACCAAATAAAAGAAGTGGCAAAGATAGCCAAAGAGTGTGTGAGAGTGAAAGGGGAGGAGCGGCCTAGCATGAAAGAGGTGGCTATGGAGTTAGAGGGACTGAGAGTAATGCAGGTTCAACATACATGGGTTAACAACAATTTATCCAACTCAGAAGAGATGATAAGTTTATTGGATGAAACTTCAAACTCCACCCAATTTCTCGTCGGCAGTAGTATCAATGCTATGGACAATAGTATAAAGACTCACATTTTGACAACACATATTCCAAATGCAAGGTGA 2250 42.4 MRRPTAETLVVHIAIFSAAVAATVASQAKPWCESKCGNLEIPYPFGMKEGCYLNINFSVTCKTNHLDSPKAFLMNSNIEVTNISLYGELNILNYVARDCYTKDGLPDINNNRPSLRVPMFTISNTKNKLTVVGCDTYAYIYGQLEGGSYTSGCMALCGNSSRAIKDGSCSGSGCCQLEIPKGLRNLELEVRSFKNHTQVHSFNPCGHAFVVQQDNFTFSTKYIENFTEDKVPLVLDWGIKKGACLTDQCPCGPNSKRNNSKSLDGSEYYCDCLDGFRGNPYLPQGCQDINECEEGSHDCVPQAKCEDKPGNYICSCPEKYEGDGKLGGTGCKRKYSNSMFIKIIIGTGVGFVVLLIGISWLYLGYKKWKFIQQKEKFFKKNGGSMLQQHLSQWQSPTDTVRIFSQEELEKATNKFNESTVVGKGGYGTVHKGVLDDGSVVAIKKSQLVDQSQTSQFINEVIVLSQVNHRNVVKLLGCCLETQVPLLVYEFITNGTLFDHIHDRTKYSNHLSWEARLRIASETAGVISYLHSSASTPIIHRDIKSTNILLDHNFIAKVSDFGASKLVPMDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIMLLELITGKKAVCFDGPEVERNLAMYVLRAMKEDCLVEVVDKEMMTDEGKLNQIKEVAKIAKECVRVKGEERPSMKEVAMELEGLRVMQVQHTWVNNNLSNSEEMISLLDETSNSTQFLVGSSINAMDNSIKTHILTTHIPNAR 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19384463 19387638 + CcPI632755_08g007580.1 Cco08g0758 185232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0758 749 SUPERFAMILY EGF/Laminin 287 323 - -
Cco08g0758 749 FunFam Wall-associated receptor kinase 2 491 711 - -
Cco08g0758 749 SMART egfca_6 288 332 IPR001881 GO:0005509(InterPro)
Cco08g0758 749 ProSiteProfiles Protein kinase domain profile. 415 700 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g0758 749 SMART serkin_6 415 690 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g0758 749 Pfam Protein kinase domain 416 683 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g0758 749 FunFam Fibrillin 2 283 327 - -
Cco08g0758 749 ProSitePatterns Calcium-binding EGF-like domain signature. 288 314 IPR018097 GO:0005509(InterPro)
Cco08g0758 749 SMART egf_5 291 332 IPR000742 -
Cco08g0758 749 SMART egf_5 243 287 IPR000742 -
Cco08g0758 749 Gene3D Transferase(Phosphotransferase) domain 1 491 711 - -
Cco08g0758 749 ProSitePatterns Protein kinases ATP-binding region signature. 421 444 IPR017441 GO:0005524(InterPro)
Cco08g0758 749 FunFam Wall-associated receptor kinase 2 385 490 - -
Cco08g0758 749 Gene3D Phosphorylase Kinase; domain 1 387 490 - -
Cco08g0758 749 CDD EGF_CA 288 323 - -
Cco08g0758 749 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g0758 749 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 28 702 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Cco08g0758 749 Gene3D Laminin 242 327 - -
Cco08g0758 749 Pfam Wall-associated receptor kinase galacturonan-binding 32 85 IPR025287 GO:0030247(InterPro)
Cco08g0758 749 Pfam EGF domain 292 325 IPR024731 -
Cco08g0758 749 ProSiteProfiles EGF-like domain profile. 288 323 IPR000742 -
Cco08g0758 749 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 305 316 IPR000152 -
Cco08g0758 749 CDD STKc_IRAK 421 690 - -
Cco08g0758 749 SUPERFAMILY Protein kinase-like (PK-like) 393 688 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0754 Cco-Chr8:19306512 Cco08g0758 Cco-Chr8:19384463 4.50E-245 dispersed
Cco08g0756 Cco-Chr8:19352990 Cco08g0758 Cco-Chr8:19384463 4.70E-203 dispersed
Cco08g0758 Cco-Chr8:19384463 Cco11g1970 Cco-Chr11:32175938 5.40E-188 dispersed
Cco08g0757 Cco-Chr8:19364831 Cco08g0758 Cco-Chr8:19384463 8.60E-244 tandem
Cco08g0758 Cco-Chr8:19384463 Cco08g0759 Cco-Chr8:19398422 1.10E-249 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87022 PF00069 Pkinase 3.50E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0758 - - - 0.0