Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0759 ATGAAGGTAGGCATGGGACGTCCAATAGATAACCTTGTTCTACTCATGATGTTGTTGTTTTCAGCGGCGGCGTCACCGGACTGTGACCAACGACGGTGTGGGAACTTGGAAATTCCATTTCCATTCGGAACGAGAAAAGGGTGTTATCTGAGTGAGAATTTCTTGATCACCTGCAACAAAACTCATAATCCTCCAAGAGCATTTATAGGGGATGGCAACGTTATTGTAACCAATATATCAATCAACGACAGCGAGCTCCGCATCTTGGGTTTGGTAGCCAAAGATTGCTACACACGAAATGGTTCCGAGACTGACAGTCATAACGAGGTCACACTGAATACGCCTTTATTCACCATTTCCAACACCAAGAACAAGTTCGTTGCCATTGGCTGCGATACTCAAGCTTTTATTTCTGGGAAAATCGAGGGGGATGCCTACAAAGGTGGTTGCATGGCGTTGTGCGGAAACAGTAATAAAACTCTAACAGATGGGCACTGCGCTGGGAATGGGTGCTGTGAGTTGGAGATTCCCAAAGGCCTAAAATATTTGGAGATCGTGGTCAGAAGCTTCCACCAGCACACTGAGGTATTCGACTTCAATCCATGTGGGTATGCTTTTGTGATCCAACAAAACAACTTCACTTTCTCCTCCAAATATATTCACACGTTTACACATGTAAGAGTTCCCCTGATGCTTGATTGGGGCATCCCAAACGGTACTTGCTCAAAATCAAATAAAAAAACCAACTGCAATAATATATGTGGACCAAATACCCAAAAGATTAACTACCTCAATGATGGATCTCAATATCGGTGCAAATGTTTGGATGGTTTCACGGGGAATCCATATCTCTCTGAAGGTTGTCAAGATGTAAATGAATGCAATGATACAAGGTTGAATGATTGTGAACACAAACAGATGTGTGTTAACACACAAGGAAATTTTACCTGCTCTTGTCCTAAGAACTATAAAGGAGATGGAAGAAACAAGGGAAAAGGATGCATTCCAACCTATAAGGCCTTCGATCAATACATCATCGGATGTACTGTAGGGTTAACACTTTTAGTAATCGGGTGCACATTGTTATGCTTGGGTTACGCAAAGTGGAAGGCCATCCACCAAAAGAAATATTTTTTCAAGAAAAATGGAGGTTTGGTGCTTGAACAACATCTTTCTGAGTGGGAATCACCGGTGGAGATGTTCAGGATTTTCACCCATGAAGAGTTGAAGAAGGCTACAAACAAGTTCCATGATAGCGCAGTGGTCGGAAAAGGTGGCTTTGGCACCGTTTACAAAGGCGTCTTAGATGATGGCTTGATAATTGCAATCAAGAAATCGAAATTAGTAGACCAATCCCAAACGGACCAATTCATTAATGAAGTCATTGTTATGTCTCAAATCAACCATCGCAACGTGGTCAAGCTGCTGGGGTGCTGTTTGGAGACAAAAGTTCCTTTGTTGGTCTACGAGTTTGTAACCAATGGCACTCTCTTTGAACACATCCACAACAAAACAAACCATGCTCCTCTTTCCTGGGAAACTCGATTGAAGATAGCTTCAGAAATTGCTAGCGTCCTTGCATATTTGCATTCTTCCACTTCTACTCCCATCATCCACAGAGATATCAAGTCTTCTAATGTACTTTTAGACCATGATTACACAGCAAAGCTGTCTGATTTTGGAGCTTCAAAACTGGTACCGTTGGATCATACTCAGCTTTCCACGATGGTGCAAGGGACTCTTGGATATTTGGACCCTGAGTACTTGTTGACAAGTGAGTTGACGGAGAAAAGTGACGTGTACAGCTTCGGAATTTTGCTTTTTGAGCTTATAACGGGAAAGAAGGCGGTGCGTTTTGATGTCCCAGAAGAAGAAAGAACTCTAGCCAAGATAGTTCTGTGTGCAATGAATGAAGATCGTTTGGAAGAAATTGTTGAGGAGGGATTGGCAACAGAAGCAAATATTGAGGAGATACAAGAGGTGGCAAAGCTAGCAAAAGAGTGTGTAAGAGTTAAAGGGGAGGAGCGCCCCACCATGAAGGAGGTGGCTATAAAGTTGGAGGAGCTGCGAATGTTACATGCTTGA 2085 42.78 MKVGMGRPIDNLVLLMMLLFSAAASPDCDQRRCGNLEIPFPFGTRKGCYLSENFLITCNKTHNPPRAFIGDGNVIVTNISINDSELRILGLVAKDCYTRNGSETDSHNEVTLNTPLFTISNTKNKFVAIGCDTQAFISGKIEGDAYKGGCMALCGNSNKTLTDGHCAGNGCCELEIPKGLKYLEIVVRSFHQHTEVFDFNPCGYAFVIQQNNFTFSSKYIHTFTHVRVPLMLDWGIPNGTCSKSNKKTNCNNICGPNTQKINYLNDGSQYRCKCLDGFTGNPYLSEGCQDVNECNDTRLNDCEHKQMCVNTQGNFTCSCPKNYKGDGRNKGKGCIPTYKAFDQYIIGCTVGLTLLVIGCTLLCLGYAKWKAIHQKKYFFKKNGGLVLEQHLSEWESPVEMFRIFTHEELKKATNKFHDSAVVGKGGFGTVYKGVLDDGLIIAIKKSKLVDQSQTDQFINEVIVMSQINHRNVVKLLGCCLETKVPLLVYEFVTNGTLFEHIHNKTNHAPLSWETRLKIASEIASVLAYLHSSTSTPIIHRDIKSSNVLLDHDYTAKLSDFGASKLVPLDHTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGILLFELITGKKAVRFDVPEEERTLAKIVLCAMNEDRLEEIVEEGLATEANIEEIQEVAKLAKECVRVKGEERPTMKEVAIKLEELRMLHA 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19398422 19401275 + CcPI632755_08g007590.1 Cco08g0759 185233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0759 694 Gene3D Transferase(Phosphotransferase) domain 1 492 693 - -
Cco08g0759 694 SMART serkin_6 416 692 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g0759 694 ProSitePatterns Protein kinases ATP-binding region signature. 422 445 IPR017441 GO:0005524(InterPro)
Cco08g0759 694 FunFam Wall-associated receptor kinase 2 386 491 - -
Cco08g0759 694 FunFam Fibrillin 2 285 330 - -
Cco08g0759 694 SMART egfca_6 290 335 IPR001881 GO:0005509(InterPro)
Cco08g0759 694 Pfam Wall-associated receptor kinase galacturonan-binding 28 88 IPR025287 GO:0030247(InterPro)
Cco08g0759 694 Pfam Calcium-binding EGF domain 290 327 IPR049883 -
Cco08g0759 694 CDD STKc_IRAK 422 689 - -
Cco08g0759 694 Pfam Protein tyrosine and serine/threonine kinase 420 685 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g0759 694 SUPERFAMILY Protein kinase-like (PK-like) 392 688 IPR011009 -
Cco08g0759 694 SMART egf_5 240 289 IPR000742 -
Cco08g0759 694 SMART egf_5 293 335 IPR000742 -
Cco08g0759 694 ProSiteProfiles Protein kinase domain profile. 416 694 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g0759 694 ProSitePatterns Calcium-binding EGF-like domain signature. 290 317 IPR018097 GO:0005509(InterPro)
Cco08g0759 694 SUPERFAMILY EGF/Laminin 289 329 - -
Cco08g0759 694 Gene3D Phosphorylase Kinase; domain 1 388 491 - -
Cco08g0759 694 FunFam Wall-associated receptor kinase 2 492 694 - -
Cco08g0759 694 ProSiteProfiles EGF-like domain profile. 290 329 IPR000742 -
Cco08g0759 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g0759 694 CDD EGF_CA 290 326 - -
Cco08g0759 694 Gene3D Plasmodium vivax P25 domain 207 343 - -
Cco08g0759 694 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 24 690 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Cco08g0759 694 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 308 319 IPR000152 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0757 Cco-Chr8:19364831 Cco08g0759 Cco-Chr8:19398422 1.90E-227 dispersed
Cco08g0759 Cco-Chr8:19398422 Cco11g1970 Cco-Chr11:32175938 4.40E-176 dispersed
Cco11g0894 Cco-Chr11:11784501 Cco08g0759 Cco-Chr8:19398422 2.50E-55 dispersed
Cco08g0759 Cco-Chr8:19398422 Cco08g0761 Cco-Chr8:19428467 5.60E-131 proximal
Cco08g0758 Cco-Chr8:19384463 Cco08g0759 Cco-Chr8:19398422 1.10E-249 tandem
Cco08g0759 Cco-Chr8:19398422 Cco08g0760 Cco-Chr8:19412329 5.50E-110 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87023 PF00069 Pkinase 2.10E-50 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0759 - - - 0.0