Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0761 ATGCTCAAAATTTTCACCCAAGAAGAGTTGGAGAAGGCTACAAACAAGTACGATGAAAGCACAGTAGTTGGCAAAGGTGGCTACGGTACCGTTTACAAAGGAGTCTTAGATGACGGTTTGGCAGTTGCAATCAAGAAATCAAAATTAGTGAACCAATCCCAAACTGACCAGTTCATTAACGAAGTCATCGTTTTGTCCCAAATCAACCATCGCAACGTGGTCAAACTCATAGGGTGTTGTTTGGAGACAAAGGTTCCATTGTTGGTGTACGAGTTCGTAACCAACGGCACACTCTTTGAACACATCCACCGCAAAACCAACCATGCTTATCTCCCATGGGAAGCTCGCTTGAAAATAGCTTCGGAAATTGCCAGCGTCCTTTCATATTTGCATTCTTCCGCTTCTACTCTAATTATCCATAGAGATATCAAGTCCAATAATATACTTTTAGACCAAAACTACACAGCAAAAGTCTCTGATTTTGGAACGTCAAAGCTTGTTCCGTTGGATGGAACTCAAATATCCACAATGGTGCAAGGGACAATTGGGTATTTGGATCCGGAATATTTTTTAACGAGTGAGTTGACGGAGAAAAGCGATGTGTATAGCTTTGGAATTGTACTTCTAGAGCTTGTAACGGGGAAGAAGGCAGTGTGTTTTGATGGGCCAGAAGAAGAGAGGAATCTAGCGATGTATGTGCTGTATGCAATGGAAGAAGATCGTGTGGAAGAAGTTGTGGAGAAGGGAATGGCGACAGAAGGAAACTTTGAGCAAATAAAAGAAGTGGCAAAACTGGCAAGAGAGTGTGTGAGAGTAAAAAGGGCGGAGCGGCCAACCATGAAGGAGGTAGCTATGGAGTTGGAGGGACTGAAACAGATGCAGGTTGAAAACTGTTCATGGGATAGAAGCAATTTGTTCGATGGAGCTTTAAACTCAAGCCAACATGTTTCCAATGATACGGACGAGAGCATGAAGGCTGAGGAGTTAACACTAGTCGAGGATGGAAGATGA 1011 43.13 MLKIFTQEELEKATNKYDESTVVGKGGYGTVYKGVLDDGLAVAIKKSKLVNQSQTDQFINEVIVLSQINHRNVVKLIGCCLETKVPLLVYEFVTNGTLFEHIHRKTNHAYLPWEARLKIASEIASVLSYLHSSASTLIIHRDIKSNNILLDQNYTAKVSDFGTSKLVPLDGTQISTMVQGTIGYLDPEYFLTSELTEKSDVYSFGIVLLELVTGKKAVCFDGPEEERNLAMYVLYAMEEDRVEEVVEKGMATEGNFEQIKEVAKLARECVRVKRAERPTMKEVAMELEGLKQMQVENCSWDRSNLFDGALNSSQHVSNDTDESMKAEELTLVEDGR 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19428467 19429477 + CcPI632755_08g007610.1 Cco08g0761 185235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0761 336 SMART serkin_6 17 290 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g0761 336 ProSiteProfiles Protein kinase domain profile. 17 290 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g0761 336 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Cco08g0761 336 CDD STKc_IRAK 23 290 - -
Cco08g0761 336 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g0761 336 PIRSF ILK 4 307 - -
Cco08g0761 336 MobiDBLite consensus disorder prediction 313 336 - -
Cco08g0761 336 Pfam Protein tyrosine and serine/threonine kinase 21 287 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g0761 336 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 2 297 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Cco08g0761 336 SUPERFAMILY Protein kinase-like (PK-like) 3 288 IPR011009 -
Cco08g0761 336 FunFam Wall-associated receptor kinase 2 93 306 - -
Cco08g0761 336 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524(InterPro)
Cco08g0761 336 Gene3D Transferase(Phosphotransferase) domain 1 93 309 - -
Cco08g0761 336 MobiDBLite consensus disorder prediction 320 336 - -
Cco08g0761 336 FunFam Wall-associated receptor kinase 2 1 92 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0761 Cco-Chr8:19428467 Cco11g0893 Cco-Chr11:11755436 1.00E-109 dispersed
Cco08g0759 Cco-Chr8:19398422 Cco08g0761 Cco-Chr8:19428467 5.60E-131 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87024 PF00069 Pkinase 4.10E-50 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0761 - - - 0.0