Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0766 ATGGGCGATATTACGACGAAATTCCCAAGAAAACCTACCCATAGCCCAGATCCTATCCCACGAACAGCCACTTCCTATTATAAATCTCCAGAACAGGACTCCACTTCCGAAGATTGCATCATTTTCAGAGGCTGGGACAGTGCTGCTGCCGTCGACGATGACTCTCAATCGGAATCGGGGGTTTGTTCACCCACGCTTTGGGGTTCCAATTCTCGAACCAGCCCCCAATTTCACCGCCCTCGTAATCGCAGCCTCTCCCCAACTTCCCGAACCCAAGCCATAGCCAGAGGCCAACAGGAGCTCATGGAGATGGTCAGGAACATGCCCGAATCATCTTACGAGCTCTCTCTCAAAGATCTCGTTGAACATCACTTGACTAATTCGAAACGTCAACAAGACGGTGACACTGCTTCCCTTTCAAGAGACGATTCCAGCTCTGAAACTTCCTTCCGAAGAGACCGTAGCAAGAACCGGAGTGAAACTAGGGCACTTGTTACCAGAAGTAGAAGCGTCGATAACGGTGGATTTTACCTCAAAATGTTCTTCCCACTGCCTTTCGGCCAGGTTTCGGCTAAAAAGAAGAGTAATCTTAGAACCGATTCGGGGTTGAGTGGTAGTTCGAGAGTGTCGCCGAAGCCACCACCGGTGGACAGAGACTGGTGGAGGAAGAGATCGTCGGTGGCTGGCGGCGAGAACGAGGGTAGTATCTCCGGCGGAAGCATGACGAGTAGCGGCAGTAGTAATAGTACTAGCAGCGAAAGAAGCAATAGCAGGAATTCTGAATCGCAAGGAAGTTGCTGGTTTTGTATTAGCCCAATGAGAAGTAAAGATCGAGAATCCGACCCATCGGCCCACTTTGGCTTTCGAGTTGACGTTGTCAACAAGTTTACTATGCCATTCATGTCGTGGACTCGTAAACAAAGTGGGACCCAATGGCCGGTAGTCTTAGTCCAGCACGAAAACGCGCAAATGGGATTTCATAATGGTTTATGTTATGATTGTCCACTTGAATCATCTGTTGTTTTGCTCACATTCGAGTCCGTGTACCCTCTTCTTCTTTTTTTCCGTTCTTTATTGGGAAATATTAGAAATGGGGTTCTTGGGAATTTTGCAAGGAATTTGTTGGTGATTCTCCTCGTGTTAATCCTAGAGATTCAAGGACAGAAGGGCTTATTTGGGTGCAAAAGAATCAGAGGGATGTCTACCAATGCTGCTGCTTGCGCTGAGAGAGCTACAAATGATGTGCTTATCGCTCCTGATTGGGCGATAAATATTGAGCTCTGTGATATCATTAACATGGATCCTAGGCAAGCGAAGGATGCATTGAAGATACTCAAGAAGCGTCTTGCTAGCAAAAATCCTAAAATACAACTTCTAGCGCTCTATGTAGTAGAGGCTCTAAGCAAAAATTGTGGCGATACTGTTTTTAAGCTGATCGTAGATCGTAATATCCTGCACGAAATGGTTAAAATTGTAAAGAAGAAGCAGCCTGATTCAACTGTACGGGACAAAATATTAGCTTTGGTAGATGCATGGCAAGCAGCATTTGGTGGTGTCCCCAAGGGAAAGTATCCACAGTACTATGCAGCCTACAATGAATTGAAGAATGCTGGATTTCAATTTCCACCTAGAGAAGAGAACGTTGGGCAGTTCTTTAGTCCACCTCAGATACAGCCAGTCACTGAGCACCCTGTTTCAGCCAGTTATGATGATCTTGCTGTTCAGGTTTCTCTCCAGTCTGATTCTTCTGGTTTAAGCTTGCCAGAAGTTCAAAATGCACAGGGACTAGCAGATGTTCTATTGGAAATGTTTGGTGCGCTGGACCCTAAGACTCCCGAGGCTTTGAAGCAAGAAGTGATCGTTGATCTTGTTGATCAATGCCGTTCCTACCACAGCCGTGTCGTGATACTTGTGAATGAGACGACAGATGAGGAACTATTATGTCAAGGATTGGTATTGAATGACAGTCTGCAGCGTGTACTCAGCTACCACGATGACATTGCTAAAGGAACATTTGTGACGGAAGCTACAAGAGCAGAACCTCCCATTCCATCGGTTCCATATATCAACCCTGAGGACGATGAGTCGGAAGATGACTTCACACCGTTATCTCGCAGGCCAACGAGAGATCACGTTTATGAAAGGGACAGGAAACTGGCAAATGGTCAATCATCTCGAGTAAGTCCACTTCCTTCACCCTCAACAAATAAGTCGGCTGGTGCTGAAATGATGGATCATCTTAGCGGCGACATGTACAAACCTGAAGAGTCTCCAAGGATAGTTGAGCCACCATCAACTTCTTCTTCTTCACCTTTCTACACTAGACAGCCTTTGTTCGACGAACCACCTCCAAGAAGCATGCGCACCAATACACTCCCGGCAACACCTCGGGACGCTCAATCTCCAAGTGCCCTCCCTCCCCCACCCTCAAGACATAATCAAAGACAACTATATTTTGAGCAACAAAAAGCTGTTACAGGAGGCACTCAGCCCCATTGGAGCAACGATTATAGTTCTTATGACACCATAGTTGGGAATACCAAGAATCTTTCACTCAGTCCTACCCCAACCAGATCCGCTGAGCATGAAGAGGCCCTTTTCAAAGATCTGGTGGATTTTGCCAAGGCCAAGTCATCTTCATCCTCCAAATCCAACCGACCATTCTGA 2667 46.57 MGDITTKFPRKPTHSPDPIPRTATSYYKSPEQDSTSEDCIIFRGWDSAAAVDDDSQSESGVCSPTLWGSNSRTSPQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDLVEHHLTNSKRQQDGDTASLSRDDSSSETSFRRDRSKNRSETRALVTRSRSVDNGGFYLKMFFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPPPVDRDWWRKRSSVAGGENEGSISGGSMTSSGSSNSTSSERSNSRNSESQGSCWFCISPMRSKDRESDPSAHFGFRVDVVNKFTMPFMSWTRKQSGTQWPVVLVQHENAQMGFHNGLCYDCPLESSVVLLTFESVYPLLLFFRSLLGNIRNGVLGNFARNLLVILLVLILEIQGQKGLFGCKRIRGMSTNAAACAERATNDVLIAPDWAINIELCDIINMDPRQAKDALKILKKRLASKNPKIQLLALYVVEALSKNCGDTVFKLIVDRNILHEMVKIVKKKQPDSTVRDKILALVDAWQAAFGGVPKGKYPQYYAAYNELKNAGFQFPPREENVGQFFSPPQIQPVTEHPVSASYDDLAVQVSLQSDSSGLSLPEVQNAQGLADVLLEMFGALDPKTPEALKQEVIVDLVDQCRSYHSRVVILVNETTDEELLCQGLVLNDSLQRVLSYHDDIAKGTFVTEATRAEPPIPSVPYINPEDDESEDDFTPLSRRPTRDHVYERDRKLANGQSSRVSPLPSPSTNKSAGAEMMDHLSGDMYKPEESPRIVEPPSTSSSSPFYTRQPLFDEPPPRSMRTNTLPATPRDAQSPSALPPPPSRHNQRQLYFEQQKAVTGGTQPHWSNDYSSYDTIVGNTKNLSLSPTPTRSAEHEEALFKDLVDFAKAKSSSSSKSNRPF 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19456410 19464320 - CcPI632755_08g007660.1 Cco08g0766 185240

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0766 888 SUPERFAMILY GAT-like domain 559 670 - -
Cco08g0766 888 Gene3D - 398 559 IPR008942 -
Cco08g0766 888 MobiDBLite consensus disorder prediction 197 263 - -
Cco08g0766 888 MobiDBLite consensus disorder prediction 52 91 - -
Cco08g0766 888 CDD GAT_GGA-like_plant 589 667 - -
Cco08g0766 888 SUPERFAMILY ENTH/VHS domain 407 543 IPR008942 -
Cco08g0766 888 PANTHER TOM1-LIKE PROTEIN 400 885 IPR044836 GO:0035091(InterPro)|GO:0043130(InterPro)|GO:0043328(InterPro)
Cco08g0766 888 ProSiteProfiles VHS domain profile. 411 542 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Cco08g0766 888 MobiDBLite consensus disorder prediction 678 815 - -
Cco08g0766 888 MobiDBLite consensus disorder prediction 722 741 - -
Cco08g0766 888 MobiDBLite consensus disorder prediction 699 721 - -
Cco08g0766 888 CDD VHS 409 536 - -
Cco08g0766 888 MobiDBLite consensus disorder prediction 50 91 - -
Cco08g0766 888 Pfam VHS domain 408 537 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Cco08g0766 888 ProSiteProfiles GAT domain profile. 581 669 IPR004152 GO:0035091(InterPro)|GO:0043130(InterPro)
Cco08g0766 888 Pfam GAT domain 597 670 IPR004152 GO:0035091(InterPro)|GO:0043130(InterPro)
Cco08g0766 888 Gene3D - 578 674 IPR038425 -
Cco08g0766 888 MobiDBLite consensus disorder prediction 127 166 - -
Cco08g0766 888 MobiDBLite consensus disorder prediction 761 775 - -
Cco08g0766 888 MobiDBLite consensus disorder prediction 18 35 - -
Cco08g0766 888 SMART VHS_2 404 538 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Cco08g0766 888 MobiDBLite consensus disorder prediction 145 165 - -
Cco08g0766 888 MobiDBLite consensus disorder prediction 1 35 - -
Cco08g0766 888 MobiDBLite consensus disorder prediction 230 263 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0766 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0425 Cco-Chr8:9953539 Cco08g0766 Cco-Chr8:19456410 2.40E-24 dispersed
Cco08g0766 Cco-Chr8:19456410 Cco11g0825 Cco-Chr11:9735801 6.90E-150 dispersed
Cco08g0766 Cco-Chr8:19456410 Cco08g1390 Cco-Chr8:25803409 1.70E-79 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g185 Blo01g01314 Blo12g01115 Bda01g00684 . Bpe02g00621 Bpe04g00015 Bma04g00022 Bma01g02098 . Cmo15g00650 . . . . . . . Bhi04g01843 Tan11g1214 . . . . . Cla08g00646 Cam08g1070 Cec08g0655 Cco08g0766 Clacu08g0775 . Cre08g0583 Cone4ag1441 . Cone17ag0809 Cone20ag0414 . Csa04g01732 . Cme03g00439 . . . . . . . . . . . . . Car04g02322 Car15g00588 Cpe01g02087 Cpe02g00872 . . . . . . . . . . . . . . Lsi08g00505 . Chy03g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001242 1 5 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 4 4 2 2 2 1 2 2 3 2 5 3 1 76