Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0776 ATGGGAATTAAGGTAGGTGAGGGAAGAGGCAGTACAGTCGGAAGAGCCGTCGCTGTTGCCGCCGTTATCGGGTTGGTTATAATGTCTCAGTTGGAGAACGTGGAGGCAGCCGTTTACGTTGTCGGCGACTCCGGTGGATGGACTTTTAACGTCCAAGGTTGGCCCAAAGGAAAACGTTTTCGTGCCGGTGATATTCTCAAGTTCAATTACGACTCAACAATTCATAACGTGGTGGTGGTGAACCAAGCTGGGTATACCAACTGCAAAACTCCGGCGGGTGCCAAAGTGTACAAATCCGGCAGCGATCAGATAACATTGCCTAAAGGACAAAGCTATTTCATCTGCAATTTCCCCGGCCACTGTGAGGCCGGCATGAAGATTGCCGAGATTCCACCGCCGTCGTTCCCCGCCGCCACCATCTCAACTGTGCTCCTGCTCCAAGCCTCCAAGGTTCAACTCCTGCAATTCCACGGACGATTCTTCTTTCCTTTTCCCTCTGCCTTTGCTCCCCCTCTTGGGGATGCCGATCAAGAGACCACTCTACGACCGCCTCAACCATCCTCTCCTCCGCCGCCGCTAGTTTCAGAAATTATAATGTCCTCGAGAGATTCTAACGTCCTTTTCAGTGGTGGCGGTATCAGTTTTCTCAATGAAAATCACACTGGAAAGTTCAGCTATGGATATTCTAGTTTCAAGGGCAAAAGGGCTTCGATGGAGGACTTCTATGAAACAAGAATTTCTGAAGTTGATGGTCAGATGGTCGCTTTTTTCGGTGTTTTTGATGGTCATGGAGGTTCCAGAACGGCTGAATACCTTAAGCGCAATCTTTTCAAGAACCTAAGTAGCCATCCAGACTTTATCAAAGACACAAGGACTGCTATTATTGAGGTCTTTAAGCAGACCGATGCCGATTATATCAATGAAGAGAAAGGACAGCAGAAAGATGCTGGGTCAACTGCATCAACTGCTGTATTGTTGGGGGATCGTCTCCTTGTTGCAAATGTTGGGGATTCTAGAGTAGTTGCATCGAGGGCTGGTTCAGCTATTCCCCTCTCTATTGATCACAAACCTGATAGATCAGACGAGCGCGAAAGGATTGAACAAGCTGGAGGGTTCATTCTTTGGGCAGGAACTTGGAGGGTTGGTGGTATTCTAGCAGTTTCGCGTGCCTTTGGAGATAAGCTACTCAAACCATTTGTTGTTGCTGATCCCGAAATTAAGGAAGAAGAACTTGAAGGTGTAGATTTTATTATTATTGCAAGCGATGGACTTTGGAATGTCATCTCAAACGAGGAAGCTGTAGCATTGGTACAACACAACCAAGATGCAGAAATGGCATCAAGAAACCTAATCCAAGAAGCTTATGCTCGAGGGAGTTCTGACAACATTACATGCGTCATTGATGTTCCTGCTCAATCTGTAGATTACTTAATACTTTGCCTTTATGATTATGGCATGCTGATATGTTTTGCTTCAAACTCATGTTGCACATGTCGTTTCAATGGGGTCTCCACGAAAATGGTGAACGATACTGAGTATTACGACATTCTCGGTGTTCGTTCTTCTGCTTCTGAGGAGGAGATTCGTAAGGCCTATTATCTTAAGGCAAAACAAGTCCATCCGGATAAAAATTTGAATGATCCTCAAGCTGCTGAAAGGTTTCAGGCGTTAGGTGAAGCTTATCAAGTGTTGAGTGATGCAGTCCAAAGAGATGCATATGATAGGAATGGGAAACATAGTATTACTAGGGAATCCATGCTTGACCCTACTGCTGTTTTTGCACTTCTATTTGGGAGTGAATTATTTGAGGACTACATTGGACATTTAGCTGTAGCATCAATGGCCTCATCTGAATTAGAAAGCGAAATTGGCAATCCAGAGAGATTACATGATAAGTTGAAGGCAATCCAGAAAGAAAGAGAAGAAAAACTTGCACGTGTACTCGAGGGTTTTCTTAATCAATATGTTCTAGGTGACAAAGACAGATTCTTACGACATGCTGAATCTGAAGCCAAAAGACTTTCTAATGCGGCTTTTGGCGTTAATATATTACACACTATAGGCTACATTTATTCAAGACAAGCAGCACAAGAGCTTGGAAAGAGAGCCATTTATCTTGGTGCTTTTCAGTTGTTACAACTTCAAGATGACATTTGCCGGCAGTTTAAAATGGATGGTAGTGGTCCTGGAAATGATATTGAATCACATATTCAAGCGAATAAAGACACATTCCTCAATTCGTTGTGGAAGCTTAATGTGGTTGACATTGAATTGACACTTATGAATGTGTGCCAGATGGTGCTACGCGATAATACTGTTAGAAAGGAAGAACTAAAAGCTCGTGCCCTGGCTCTGAAGATTCTTGGAAAGATATTCCAGGAGAAGCAGGCACAAAATGGTGGAACGTCAAGAAAGAAAGGTGCTGCTGCAATAGATGACGACGGAACGAGTTCAGAGAGCAGCGATGATGAGGACGATCCCCGAAGGCCGCTATCATATCGAACTCCTTTTCTTACTCAGGCAAGTAGATCAAACTCTTCTCTTTCCACTCAAAAGAGGATCCACTTTATCTCATGTACGTTGAAACTCGCGCGGAAAACTTTGCCCGAATTTTTAATCCAGAAGTCTTCACTTATGAAATTGAAGGCATTTCCAAAAGTAACCAAGCAAGTGTTCAAAACAAATAAGAGGCTTGGCATCTTCATGTCCGTAAGCTACATATTTACACATGAAAAGAAAGGAAAAGCCGACCGAGAGAACGAAGTCCTCATATGTCCAGATTCCCGTTCTTCCGAGCAACATGTACATATACAACCATATCATGATTTTCCGGAGAAGGATGGTGTTCTAGAATAA 2856 43.73 MGIKVGEGRGSTVGRAVAVAAVIGLVIMSQLENVEAAVYVVGDSGGWTFNVQGWPKGKRFRAGDILKFNYDSTIHNVVVVNQAGYTNCKTPAGAKVYKSGSDQITLPKGQSYFICNFPGHCEAGMKIAEIPPPSFPAATISTVLLLQASKVQLLQFHGRFFFPFPSAFAPPLGDADQETTLRPPQPSSPPPPLVSEIIMSSRDSNVLFSGGGISFLNENHTGKFSYGYSSFKGKRASMEDFYETRISEVDGQMVAFFGVFDGHGGSRTAEYLKRNLFKNLSSHPDFIKDTRTAIIEVFKQTDADYINEEKGQQKDAGSTASTAVLLGDRLLVANVGDSRVVASRAGSAIPLSIDHKPDRSDERERIEQAGGFILWAGTWRVGGILAVSRAFGDKLLKPFVVADPEIKEEELEGVDFIIIASDGLWNVISNEEAVALVQHNQDAEMASRNLIQEAYARGSSDNITCVIDVPAQSVDYLILCLYDYGMLICFASNSCCTCRFNGVSTKMVNDTEYYDILGVRSSASEEEIRKAYYLKAKQVHPDKNLNDPQAAERFQALGEAYQVLSDAVQRDAYDRNGKHSITRESMLDPTAVFALLFGSELFEDYIGHLAVASMASSELESEIGNPERLHDKLKAIQKEREEKLARVLEGFLNQYVLGDKDRFLRHAESEAKRLSNAAFGVNILHTIGYIYSRQAAQELGKRAIYLGAFQLLQLQDDICRQFKMDGSGPGNDIESHIQANKDTFLNSLWKLNVVDIELTLMNVCQMVLRDNTVRKEELKARALALKILGKIFQEKQAQNGGTSRKKGAAAIDDDGTSSESSDDEDDPRRPLSYRTPFLTQASRSNSSLSTQKRIHFISCTLKLARKTLPEFLIQKSSLMKLKAFPKVTKQVFKTNKRLGIFMSVSYIFTHEKKGKADRENEVLICPDSRSSEQHVHIQPYHDFPEKDGVLE 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19538892 19555728 - CcPI632755_08g007760.1 Cco08g0776 185250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0776 951 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 433 826 IPR052423 -
Cco08g0776 951 SMART dnaj_3 511 569 IPR001623 -
Cco08g0776 951 SUPERFAMILY Chaperone J-domain 506 607 IPR036869 -
Cco08g0776 951 Pfam X-domain of DnaJ-containing 637 708 IPR026894 -
Cco08g0776 951 Pfam X-domain of DnaJ-containing 709 800 IPR026894 -
Cco08g0776 951 Pfam Protein phosphatase 2C 226 463 IPR001932 -
Cco08g0776 951 MobiDBLite consensus disorder prediction 173 192 - -
Cco08g0776 951 ProSitePatterns PPM-type phosphatase domain signature. 256 264 IPR000222 GO:0043169(InterPro)
Cco08g0776 951 ProSiteProfiles PPM-type phosphatase domain profile. 225 470 IPR001932 -
Cco08g0776 951 Gene3D - 37 129 IPR008972 -
Cco08g0776 951 CDD DnaJ 512 566 IPR001623 -
Cco08g0776 951 SUPERFAMILY Cupredoxins 37 127 IPR008972 -
Cco08g0776 951 SMART PP2C_4 215 468 IPR001932 -
Cco08g0776 951 Gene3D DnaJ domain 501 591 IPR036869 -
Cco08g0776 951 PRINTS DnaJ domain signature 514 532 IPR001623 -
Cco08g0776 951 PRINTS DnaJ domain signature 532 547 IPR001623 -
Cco08g0776 951 PRINTS DnaJ domain signature 569 588 IPR001623 -
Cco08g0776 951 PRINTS DnaJ domain signature 549 569 IPR001623 -
Cco08g0776 951 CDD PP2Cc 224 467 IPR001932 -
Cco08g0776 951 MobiDBLite consensus disorder prediction 799 836 - -
Cco08g0776 951 Pfam DnaJ domain 512 574 IPR001623 -
Cco08g0776 951 Pfam Plastocyanin-like domain 47 125 IPR003245 GO:0009055(InterPro)
Cco08g0776 951 FunFam basic blue protein-like 37 130 - -
Cco08g0776 951 ProSitePatterns Type-1 copper (blue) proteins signature. 109 125 IPR028871 -
Cco08g0776 951 ProSitePatterns Nt-dnaJ domain signature. 554 573 IPR018253 -
Cco08g0776 951 ProSiteProfiles dnaJ domain profile. 512 577 IPR001623 -
Cco08g0776 951 CDD Plantacyanin 37 131 IPR041844 -
Cco08g0776 951 Gene3D - 216 471 IPR036457 -
Cco08g0776 951 ProSiteProfiles Phytocyanin domain profile. 37 133 IPR003245 GO:0009055(InterPro)
Cco08g0776 951 SUPERFAMILY PP2C-like 222 467 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1146 Cco-Chr5:10511803 Cco08g0776 Cco-Chr8:19538892 2.40E-32 dispersed
Cco05g1148 Cco-Chr5:10531377 Cco08g0776 Cco-Chr8:19538892 1.40E-37 dispersed
Cco05g1832 Cco-Chr5:27225870 Cco08g0776 Cco-Chr8:19538892 1.60E-95 dispersed
Cco08g0776 Cco-Chr8:19538892 Cco11g1979 Cco-Chr11:32232129 1.60E-96 dispersed
Cco08g0776 Cco-Chr8:19538892 Cco07g0249 Cco-Chr7:2544210 5.90E-46 transposed
Cco08g0776 Cco-Chr8:19538892 Cco11g1844 Cco-Chr11:31126697 5.90E-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0776 - - - 0.0