Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0788 ATGGTCTTGATTACTGCTCGTAATTCCAGACTCTTTGCAGTTTCCACTTCACTAATCCTTCCACAAAGTGGCTTCCGATGGTCTTCAATCTCCCCCAGAAATCTTCCCTTCCCATTTGTCGAGCATCTATTTCCTTCTACGTCGAACAATCCCCTATTACTTCATGCCAGAAAGAGAAACTCAGAGTCAGAGCCAGTTCTCAAACGAAACATCGTCGAGGAAGTGTCGGAGGACGAAGAAGATGACGTCCTTCTCGACGAACTTGAAGAAGATGAGATAATGGAAGATGATGACGAAGATTACTTTGAAGAAGAGTATATGGAGGATAATGCTGAAGTCTATGAAGGGGATGGCGGGGAAGGAGGTGGAATTTCCCTCGCTGGGACATGGTGGGATAAAGAAGCACTGGCTATAGCTGAAGAGGTTATTCTTTCATTTCATGGTGACTTGAAGATTTATGCTTTCAAAACAGTCTCTAATTCCACTGTTCGAGTGCGGATTGAAAAGCTTTCTAACAAATCGGGTTCCCCCAGTATGGAAGATATTGAGGCTTTTTCTACAACATATCGAGCACGATTGGATCAGGCAGAGCTTGCTAAATCTGTGCCAGAGAATATATCTTTAGAGGTCTCATCTCCTGGTGTTGAACGGGTTGTTCGGATTCCTGACGAGCTGGATCGGTTCAAAGAGAGGGCAATGTATGTGAAATACACAAACAATGTAGCTACAGCCAGTTCGTCCTCTGAGAGTGACGGCATTTTCAAGCTTGTGTCATTCGACATAGAAGCAAAGTGCTGCACTTGGGGTTTAGCAGACGTGAAGATAAATAGAGAGAAGGCGGGAAAAGGAAGACCTCTTAGCAAAAAGCAAAGAGAGTGGCGTTTAGAGACTCCTTTTGATTCATTACGTTTGGTTAGGCTGTATTCTGATTGCTGA 936 44.02 MVLITARNSRLFAVSTSLILPQSGFRWSSISPRNLPFPFVEHLFPSTSNNPLLLHARKRNSESEPVLKRNIVEEVSEDEEDDVLLDELEEDEIMEDDDEDYFEEEYMEDNAEVYEGDGGEGGGISLAGTWWDKEALAIAEEVILSFHGDLKIYAFKTVSNSTVRVRIEKLSNKSGSPSMEDIEAFSTTYRARLDQAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTNNVATASSSSESDGIFKLVSFDIEAKCCTWGLADVKINREKAGKGRPLSKKQREWRLETPFDSLRLVRLYSDC 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19699478 19702882 - CcPI632755_08g007880.1 Cco08g0788 185262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0788 311 Pfam RimP N-terminal domain 155 216 IPR028989 -
Cco08g0788 311 SUPERFAMILY YhbC-like, N-terminal domain 155 216 IPR035956 -
Cco08g0788 311 PANTHER OSJNBA0006B20.18 PROTEIN 34 311 - -
Cco08g0788 311 Hamap Ribosome maturation factor RimP [rimP]. 133 311 IPR003728 GO:0042274(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0788 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2634 Cco-Chr5:34478876 Cco08g0788 Cco-Chr8:19699478 7.10E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1216 Blo01g01787 . . . . . . Bma01g02573 . Cmo15g00630 . . . . Sed03g0457 . Cpe13g00664 Bhi04g01819 Tan11g1188 Cmetu03g1258 . Hepe02g2768 . Lcy10g1314 Cla08g00663 Cam08g1094 Cec08g0679 Cco08g0788 Clacu08g0799 . Cre08g0602 . . . . . . . Cme03g00397 Blo17g00222 . . . . Bpe14g00329 . Bma02g00281 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00523 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013291 0 1 1 1 1 0 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26