Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0790 ATGAGGGGAGAAAGTGTTTTGGTAGTAGAAATTAGTGGTGTGGTTCCTGTTTCCACCTCTTGGACTGAAGCCCACACCAACAGTGTCAAAGATTGTGCAACCCTACAGCCATTAAGGAGATTTTTGGGGTATTATTCTAAAACCCTTTCTAATCAATTATTGATCTCTCTCCGACTTATGCAAGATCGTCGGGTGATGGGAGTTGCAGTTTTGATCATCGTGATTAATCGGCAACTTCCCTCGTCGGTCGTCGCAGATCTGAGATCCTCCGTCCAGCCCTCTGCGTTTGCGATTCTACTCTCTTGCCGCCGCATTCACCAATTTTGCTGTCGGGATCAGAACTGTCAATTTGAGAACTACAAGCTAAAAATGGTGCTGATTTCGGTTGTTCGGGATTATCTCAACAAAATGTTGCAGGACATCTCCGGCATGAAGGTTCTCATCCTTGATTCTCAGACGGTTAGTGTTGTCAGTGTGGTGTACTCACAGTCGGAGCTTCTTCAAAAAGAAGTCTTTTTGGTTGAATTGGTAGATGCCGTATCGAAGTCTAGGGAATCCATGTATCATCTTAAAGCAGTTTGCTTTCTCAGGCCCACGTCAGAGAATATACAGCTTTTGCGTCGCCAGCTGGCTAATCCTAGATTTGGGGAGTATCACCTTTTTTTCTCCAACATTTTGAAGGAAACTCAGATTCATATACTAGCTGATTCAGACGAGCAGGATGTTGTCCAGCAAGTTTTGGAGTTTTATGGGGATTTCGTGGCCATTGATCCTTATCATTTCACTTTAAATATGCCATCAAACCATATATACATGATCCCAGCAGTTGTTGATCCTCCAAGTTTGCAACATTTCTGTGACCGAGTTGTAGATGGCATTGCAGCACTTTTCTTGGCCTTAAAACAAAGACCTGTTATTAGGTACCAAAGGACATCTGATGTTGCCAAGAGGATAGCACAGGAAACATTGAAACTTATGTATCAGCAAGAAAGTGGTCTGTTTGATTTTCGAAGAATGGAAATTTCCCCTTTGTTACTGGTAATTGATAGGAGGGATGACCCGCTGACTCCCCTGCTGAATCAATGGACTTATCAGGCAATGGTTCATGAATTACTAGGTATTCAAGACAATAAAGTGGACTTGAAAAGCATTGGGAAATCTTCAAAGGATCAACAGGAGGTTGTGCTATCATCAGAGCAAGATTCGTTTTATAAAGCCAACATGTACGAGAATTTTGGAGATATTGGAATGAATATAAAGAAGTTGGTGGACGATTTTCAGCAAATTGCCAAAAGTAACCAGAACATACAGACAATAGAGGACATGGCCAAGTTTGTTGACAATTATCCAGAGTACAGAAAAATGCATGGTAATGTTTCAAAACATGTGACGTTGGTGACAGAGATGAGTAAAATAGTTGAGGAGCGAAAGCTTATGTTAGTTTCACAGACAGAACAGGAATTGGCTTGCAATGGTGGACAAGTGGCTGCTTTTGAGGCTGTAACAAATCTTTTGAACAATGAGAGTATTTCTGATATAGACCGTCTGCGGCTAGTTATGCTGTATGCCTTACGGTATGAGAAGGAGAGTCCTGTCCAACTGATGCAGCTTTTCAACAAATTGGCTTCTCGTTCTGCCAAATATAAAACAGGGCTTGTCCAGTTTCTTTTAAAACAAGCTGGTGTTGATAAGCGAACGGGTGATCTTTATGGAAATCGAGATCTTTTGAATATTGCTCGTAACATGGCTCGTGGATTAAAGGGGGTTGAGAACGTATACACTCAGCACCAACCTCTTGTGGTCCAGACCATGGAAAGTATAATCAAGGGACGATTGAGAGATGTGGACTACCCGTTTGTTGGGAATCACTTTCAGCAAGGAAGGCCACAAGAAGTCATCATTTTCATTGTAGGTGGGACGACATATGAGGAGTCACGTGCTGTAGCTTTACAAAACGCAACTACTTCTGGAATACGTTTTATCCTAGGTGGTTCTGTGGTTCTAAATTCTAGGAGGTTTCTGAAGGACTTGGAAGAAGCTCAGCGGATATCTCGTTCAAGCGTTCAGCAATCAAGTCAATTTTCTGCTCATCATGTTACAACTCTAAATGTCCCATTTGTCACCAAACAAGCCGTCTACATCTCCGAGGTAGCTAAAGACGGCAAACTTCTTCCCGTAACAGCCCATCGGCGCCCTCCGCCTCACCTGTGGGCCCCGGGGGTTGCCTTCAATCAACGGCTGAAATTCTACTGTATTCTTTGCTTTCTCACCGACTCCGTCACTTTAGTCGTTTCAATTTCCTTCTACTTCGTGAACCACGTTTCCAGTTGCCGAAGCAACTTCCGATTTCCTCATCTCTGTTCACCTCCACCTTACCGGCGCCTGATTTTCCCTCCGTCTCCCAAAATATTAATCGGTTTATCACTCGAACTTCCCACGGGAAAATCTCCTCCGCAGTTTTGCTTGATGGGATGGAGGGTGTTCTTCTACACTCTGTTTATTCTCGTCAATATGGTTGAATCCTCCAGTAGATCAGGGAAGATGTGGTTACTGAATTTAAGCAGTGAAGCAGCACCTAACTTCAGCTGGACAATTCTCAGTGCTGGTGTATTCGTCCTTGTTGCAGTTGTTCTTTCCACGTTTCTCATCATCGAACATTTAGCTTCTTATAATCAACCAGAGGAACAAAAGTTTTTGATTGGTCTGATATTGATGGTTCCTGTTTACTCTCTAGAATCGTTCCTGTCATTGTTAAATTCAAATGGTGCATTCAACTGTGAAGTGATACGGGACTGCTATGAGGCATTTGCATTATATTGCTTTGAAAGATACCTTATTGCTTGCTTGGGTGGTGAAAAACGTACGCTTGAATTCATGGAAAGTCAGACTGTTGTTAACTCTAGCACACCTCTTTTGGCGGAAAAATATGCATATGGGGTTGTAGAACATCCTTTCCCCTTAAATTGCTTCATAAGGGATTGGTATCTTGGTTCTGACTTCTATCATGCGGTGAAAATTGGTATTGTTCAATATATGATATTGAAGATGATATGTGCGCTCCTAGCAATGATTCTTGAAAGTTTTGGGGTCTATGGAGAAGGAAAGTTCGAGTGGAGATATGGTTATCCCTATTTGGCGGTTGTACTTAATTTTAGTCAGTCGTGGGCCCTATATTGCCTTCTCCAATTCTATTCTGTCACGAAGGACAAATTGGAATCAATTAAACCATTGGCAAAGTTTCTTGTGGTCAAGTCAATTGTTTTCCTCACTTGGTGGCAAGGTGTTGCCGTTGCCTTTCTTTTCTCAATAGGAGCTTTTAAAGGGTCCTTGGCTCGGGAGCTAAAGACACGCATACAAGATTATCTGATATGTATTGAGATGGGTATTGCAGCCGTTGCACATGTTTACACCTTTCCAGCAGTACCTTACAAACGTGGAGAAAGATGTGTTCGTAACGTTGCGGTGCTGTCTGACTACGCGTCTCTAGGAACGCCACCAGATCCAGAGGAGGTTAGAGACTCTGAACGAACAACTAAAATACGCTTGGGTCGTCAAGATGAGAGAGAGAAGCGTTTGAATTTTCCTCAAAGTGTTCGAGATGTTGTCATTGGAAGCGGGGAAATTATTGTTGATGACATGAAGTATACAGTCACACACGTAGTAGAACCAGTTGAAAGGGGGATTGCAAAACTTAACAAAACGATCCATCGGTTCTCTGAAAACGTTAAACGGCATGAAGAGCAACGGAAGAGTGCCAAGGATGACAGCCATCTGATTCCTTTGAATTCCTGGTCAAAAGAATTTTCTGAAGTCGAAGAAAATCTTACCCAAGGCAGCGTAAGTGACAGTGGAATCTCCAATGGTAAGAGACAACATTTCCAATCAAAAACCACCACTTCTGGAATTAGAATTGGCAGATAA 3921 42.51 MRGESVLVVEISGVVPVSTSWTEAHTNSVKDCATLQPLRRFLGYYSKTLSNQLLISLRLMQDRRVMGVAVLIIVINRQLPSSVVADLRSSVQPSAFAILLSCRRIHQFCCRDQNCQFENYKLKMVLISVVRDYLNKMLQDISGMKVLILDSQTVSVVSVVYSQSELLQKEVFLVELVDAVSKSRESMYHLKAVCFLRPTSENIQLLRRQLANPRFGEYHLFFSNILKETQIHILADSDEQDVVQQVLEFYGDFVAIDPYHFTLNMPSNHIYMIPAVVDPPSLQHFCDRVVDGIAALFLALKQRPVIRYQRTSDVAKRIAQETLKLMYQQESGLFDFRRMEISPLLLVIDRRDDPLTPLLNQWTYQAMVHELLGIQDNKVDLKSIGKSSKDQQEVVLSSEQDSFYKANMYENFGDIGMNIKKLVDDFQQIAKSNQNIQTIEDMAKFVDNYPEYRKMHGNVSKHVTLVTEMSKIVEERKLMLVSQTEQELACNGGQVAAFEAVTNLLNNESISDIDRLRLVMLYALRYEKESPVQLMQLFNKLASRSAKYKTGLVQFLLKQAGVDKRTGDLYGNRDLLNIARNMARGLKGVENVYTQHQPLVVQTMESIIKGRLRDVDYPFVGNHFQQGRPQEVIIFIVGGTTYEESRAVALQNATTSGIRFILGGSVVLNSRRFLKDLEEAQRISRSSVQQSSQFSAHHVTTLNVPFVTKQAVYISEVAKDGKLLPVTAHRRPPPHLWAPGVAFNQRLKFYCILCFLTDSVTLVVSISFYFVNHVSSCRSNFRFPHLCSPPPYRRLIFPPSPKILIGLSLELPTGKSPPQFCLMGWRVFFYTLFILVNMVESSSRSGKMWLLNLSSEAAPNFSWTILSAGVFVLVAVVLSTFLIIEHLASYNQPEEQKFLIGLILMVPVYSLESFLSLLNSNGAFNCEVIRDCYEAFALYCFERYLIACLGGEKRTLEFMESQTVVNSSTPLLAEKYAYGVVEHPFPLNCFIRDWYLGSDFYHAVKIGIVQYMILKMICALLAMILESFGVYGEGKFEWRYGYPYLAVVLNFSQSWALYCLLQFYSVTKDKLESIKPLAKFLVVKSIVFLTWWQGVAVAFLFSIGAFKGSLARELKTRIQDYLICIEMGIAAVAHVYTFPAVPYKRGERCVRNVAVLSDYASLGTPPDPEEVRDSERTTKIRLGRQDEREKRLNFPQSVRDVVIGSGEIIVDDMKYTVTHVVEPVERGIAKLNKTIHRFSENVKRHEEQRKSAKDDSHLIPLNSWSKEFSEVEENLTQGSVSDSGISNGKRQHFQSKTTTSGIRIGR 1306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19715236 19733317 + CcPI632755_08g007900.1 Cco08g0790 185264

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0790 1306 FunFam Vacuolar sorting protein 126 251 - -
Cco08g0790 1306 Pfam Sec1 family 145 676 IPR001619 GO:0016192(InterPro)
Cco08g0790 1306 SUPERFAMILY Sec1/munc18-like (SM) proteins 125 679 IPR036045 -
Cco08g0790 1306 Coils Coil 1228 1255 - -
Cco08g0790 1306 Gene3D - 261 678 IPR027482 -
Cco08g0790 1306 FunFam Vacuolar protein sorting-associated protein 45 homolog 476 597 - -
Cco08g0790 1306 MobiDBLite consensus disorder prediction 1275 1306 - -
Cco08g0790 1306 Pfam Organic solute transporter Ostalpha 865 1143 IPR005178 -
Cco08g0790 1306 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 361 474 IPR043127 -
Cco08g0790 1306 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 126 674 IPR001619 GO:0000139(PANTHER)|GO:0006886(PANTHER)|GO:0016192(PANTHER)|GO:0016192(InterPro)
Cco08g0790 1306 SMART Solute_trans_a_2 864 1143 IPR005178 -
Cco08g0790 1306 Gene3D - 117 251 IPR043154 -
Cco08g0790 1306 Gene3D - 476 597 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0790 K12479 - - csv:101203589 1056.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0372 Cco-Chr2:3379346 Cco08g0790 Cco-Chr8:19715236 9.90E-125 dispersed
Cco02g1578 Cco-Chr2:28470053 Cco08g0790 Cco-Chr8:19715236 3.30E-36 dispersed
Cco03g0562 Cco-Chr3:5743691 Cco08g0790 Cco-Chr8:19715236 6.10E-26 dispersed
Cco08g0790 Cco-Chr8:19715236 Cco11g0158 Cco-Chr11:1669307 9.70E-84 dispersed
Cco08g0790 Cco-Chr8:19715236 Cco11g1896 Cco-Chr11:31654145 1.60E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1222 . . . . . . . . Cmo04g02543 Cmo15g00626 . . . . . Cpe06g00929 . Bhi04g01815 Tan11g1185 . . . . . Cla08g00665 Cam08g1096 Cec08g0681 Cco08g0790 Clacu08g0802 . Cre08g0606 . . Cone17ag0797 Cone20ag0396 . . . Cme03g00394 . Blo18g00220 . Bda13g01530 Bpe02g01601 Bpe14g00331 Bma01g00869 . . . . . . Car04g02341 Car15g00570 . . . . . . . . . . . . . . . . Lsi08g00526 . Chy03g00590 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007852 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35