Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0798 ATGTTGATGAACTCATCTTCTTCTCCGATCATCTTCTTCTTCTTGATTCTCTCCCACTTCCCCCTTCTTTCTCTTTCTTTCTCTCCGAATCAAAACATTACCCTCTCCGGCGATGCCCATCTCAGAAACAACGCCATTTTCCTCACTCAAGAACTCAATTGCCTTCCCTTTTCTTCTAATTCCTCTTCCTCTTCTGGCTTCGGCACCGCCTTCTACATAAACCCTATTCGCTTTCTTGATTCCTCCACCAACTCCACCGCTTCTTTCTCCTCTCGCTTCTCCCTCTCCATCCTCCCCACCCCACTTTGCCCTTTCGCCGACGGAATCGCTTTCTTCATCACCTCCGATTCCAAATCTTTCAGCCGTTCTTATGGCTATATGGGCCTCCCCGACCCCCCTCTTAATTCCCATTACTCGTTCGTCGCTGTCGAATTCGACACCAATTTCGACCCTAATCTCGGTGACATTAACGACAACCATCTCGGCCTCGATGTCAATTCAGCTACCTCTTTGACCTCTGTGGATTTTGGGTCCAGAGGCATTGTTCTCAAAAATGGCAGACAGATTACTGCTTGGATTGAGTACAGAGATGACTCGAAAACGATCCAGGTTTGGGTTGGTTATTCTCAAACAAGGCCTGTAAATCCTCTTCTAGTTGCGCAGATTGACCTTTCTAAGCAATTTAAAGAGTTTATGTATGTGGGATTCTCTGCTTCTAATGGACAGGGCTCTGCTCTTTACATTGTTGATAGATGGAGATTCAGAACTTTTGGGTTGATTCCTTCATTGAGTCCTGTTGATACTATTAATGAAGGAAATTGTTTTATGTGTTCGTCAGAGGATTCGAATTCTAGTAGTAGTCGCTTTGTTGATGCTCGTAAAAGGAGGAAGAAGATTGGAGAGATGAATCTTGGATTGGGAGGTTTGGCTGCATTTGTCTGTTCTATTACTGCACTTTTTGGGTTGGTTAGTTTTGTTTTGATAAAGAAGTTGAGAGGAAGAATGTGTAGAGGCAGAGCAATCCACAGAACTTGTCAAGTTGAGATGAACAGAGTTCCAACAAGATTGTCTCTTGGGGAGATAAAGTTAGCTACAATGGGTTTTAATCAAAATAGAGTTGTTGGGGAAGGTGGTTCTGCAACTGTTTACAAAGGGTCTCTTGCATCAGGTGGAGAAGTGGCTGTTAAACGTTTCGAGCGAGGCACGGCGAACAACCGTCTATGCAATCCTTTCACGACAGAGTTTGCAACGATGGTAGGATGCTTACGACACAAGAATTTGGTTCAGCTGCATGGATGGTGTTGTGAAGCAAATGAATTGGTGCTTGTTTATGAGTATTTAGCCAATGGAAGCCTTGCCAAACTTCTTCACAACACATCCCCCAATTCACAATTTGTTCTTCCTTGGAAGAAGAGGTTTTCCGTAGTTCTTGGGGTTGCTTCTGCATTGACGTATCTCCATGAAGAGTGTGAAAGCCAAATTATCCATAGAGATGTCAAGACTTGCAACATTATGCTTGATGCAGACTTCAACGCGAAACTCGGGGATTTCGGTCTAGCAGAAGTGTATGAACACAGTTCGATCACAAGGGAAGCAACCATACCGGCTGGAACAATGGGCTATCTTGCACCTGAATACGTCTATTCCGGTGTTCCCACTGTGAAAACTGATGTTTACAGCTTCGGTGTGGTGATGCTCGAAGTTGCGTCAGGAAGGAGGCCTGTAAATGAAGACGGGACAGTGCTTGTCGATTGGATTTGGGATTTATGGGAAGTGGGGAAACTGATTGAAGCATCTGATTCAAGGTTGATGGGAAACTACAATATAGTAGAAATGGAGAGAATGCTAATGGTAGGACTTTTTTGTGTACATCCAAATCATGAAAAGAGACCAACTGTGAAAGAAGCTGCAAGAATTCTTAAAGGGGAAGCACCACTCCCAGTACTGCCATCAAGGAAACCAAGGGTCAACATTAGGCCTGTTTTTCCTGATGATTCTGAAGACATAGAGAATCCTTGTGCCGATTATCTCGCCTTCGACGAATCGGCATGGATGACCCCCAAGAGTCAGTTTAGTTAG 2079 44.25 MLMNSSSSPIIFFFLILSHFPLLSLSFSPNQNITLSGDAHLRNNAIFLTQELNCLPFSSNSSSSSGFGTAFYINPIRFLDSSTNSTASFSSRFSLSILPTPLCPFADGIAFFITSDSKSFSRSYGYMGLPDPPLNSHYSFVAVEFDTNFDPNLGDINDNHLGLDVNSATSLTSVDFGSRGIVLKNGRQITAWIEYRDDSKTIQVWVGYSQTRPVNPLLVAQIDLSKQFKEFMYVGFSASNGQGSALYIVDRWRFRTFGLIPSLSPVDTINEGNCFMCSSEDSNSSSSRFVDARKRRKKIGEMNLGLGGLAAFVCSITALFGLVSFVLIKKLRGRMCRGRAIHRTCQVEMNRVPTRLSLGEIKLATMGFNQNRVVGEGGSATVYKGSLASGGEVAVKRFERGTANNRLCNPFTTEFATMVGCLRHKNLVQLHGWCCEANELVLVYEYLANGSLAKLLHNTSPNSQFVLPWKKRFSVVLGVASALTYLHEECESQIIHRDVKTCNIMLDADFNAKLGDFGLAEVYEHSSITREATIPAGTMGYLAPEYVYSGVPTVKTDVYSFGVVMLEVASGRRPVNEDGTVLVDWIWDLWEVGKLIEASDSRLMGNYNIVEMERMLMVGLFCVHPNHEKRPTVKEAARILKGEAPLPVLPSRKPRVNIRPVFPDDSEDIENPCADYLAFDESAWMTPKSQFS 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19829150 19831228 - CcPI632755_08g007980.1 Cco08g0798 185272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0798 692 FunFam L-type lectin-domain containing receptor kinase S.6 336 446 - -
Cco08g0798 692 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 258 IPR013320 -
Cco08g0798 692 ProSiteProfiles Protein kinase domain profile. 368 649 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g0798 692 Gene3D Transferase(Phosphotransferase) domain 1 447 645 - -
Cco08g0798 692 Pfam Legume lectin domain 26 256 IPR001220 GO:0030246(InterPro)
Cco08g0798 692 Pfam Protein kinase domain 369 636 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g0798 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 494 506 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g0798 692 Gene3D - 22 260 - -
Cco08g0798 692 SUPERFAMILY Protein kinase-like (PK-like) 348 640 IPR011009 -
Cco08g0798 692 CDD lectin_legume_LecRK_Arcelin_ConA 26 258 IPR001220 GO:0030246(InterPro)
Cco08g0798 692 FunFam L-type lectin-domain containing receptor kinase VIII.1 447 658 - -
Cco08g0798 692 Gene3D Phosphorylase Kinase; domain 1 333 446 - -
Cco08g0798 692 PANTHER - 36 650 IPR050528 GO:0002229(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
Cco08g0798 692 ProSitePatterns Legume lectins beta-chain signature. 141 147 IPR019825 -
Cco08g0798 692 CDD STKc_IRAK 374 642 - -
Cco08g0798 692 ProSitePatterns Protein kinases ATP-binding region signature. 374 396 IPR017441 GO:0005524(InterPro)
Cco08g0798 692 SMART serkin_6 368 639 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0798 Cco-Chr8:19829150 Cco10g2027 Cco-Chr10:33702384 3.10E-105 dispersed
Cco08g0798 Cco-Chr8:19829150 Cco10g2120 Cco-Chr10:34452961 3.20E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87026 PF00069 Pkinase 1.30E-42 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0798 - - - 0.0