Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0800 ATGGAAACCAGGCTCTCCGCCGCTCTCGGCCTTCCCTCGACGGATGCCGTTTGTTATCCTTCTCTTTTTGAATTCCCCACTCTTTTCTCCAACTTCGATTCACTTCTCGCCGGAAATAGAGCCCCCAAAGATCGGAATCACTTCCAATACTCTCCTCTTCCGTTTTCTTCATTATCCTTATCCACGGAGGAGCAAGTTTTCACCCCCAAATCCCCCAACTGGGTCAAACCCGTCTCGAAAAGCACCCCCAAAATCCAATCCCTTATGAAGAATTTGTCCGTCCTCGAACGGGCAGTCGTCGGCGCCGCTGGCGGCGCCATGGCCGGCGCCTTCACTTACGTATGTCTTCTTCCACTTGACACCATTAAAACCAGGCTTCAGGCAAAAGGGGCTTCGCAGATTTACAAGAACACATTCGACGCTGTCGTCAAGACCTTTCAATCCAGAGGGATTCTCGGGTTTTACAGCGGCGTTTCGGCAGTAATCGTCGGCTCGGCGGCTTCTTCGGCCGTTTATTTTGGAACCTGTGAATTTGGGAAGTCGATTTTGTCGAAATTTGATTACCCTTCTCTGCTTATACCTCCAACTGCTGGGGCTATGGGAAATATCATCTCTTCGGCTGTAATGGTGCCGAAGGAGTTAATTACTCAGAGAATGCAGGTTGGGGCTAAAGGGAGGTCTTGGGAGGTTTTGATTCAGATTTTGGAGAAAGACGGTATAATGGGTCTTTATGCTGGATATTTTGCTACATTGCTTCGGAATTTACCAGCTGGGGTTTTGAGTTACTCTTCGTTTGAGTATTTGAAAGCTGCTGTTCTAAGCAAGACGAAGAGTAACAAACTAGAACCGCTTCAGAGTGTTTGTTGTGGAGCACTGGCAGGTGCTATATCAGCTACTCTTACAACACCTCTTGATGTAGTGAAGACACGGTTGATGACTCAAGTTCATGGGGAGGCTGCAAACAAAGTTTCAGCTGCAATGTACAGTGGAGTGTCAGCTACAATTAGGCAAATAATGCAGGAAGAGGGGTGGATTGGATTAACCCGTGGGATGGGTCCTAGAGTTCTTCACAGTGCCTGCTTTGCAGCGATTGGCTACTTCGCTTTCGAGACTGCGAAACTTGCCATTTTGGATCATTATCTTAGACAGAAGGAGGCTACGGAATTGGCTTCTGCTTCAACTTGA 1185 47.93 METRLSAALGLPSTDAVCYPSLFEFPTLFSNFDSLLAGNRAPKDRNHFQYSPLPFSSLSLSTEEQVFTPKSPNWVKPVSKSTPKIQSLMKNLSVLERAVVGAAGGAMAGAFTYVCLLPLDTIKTRLQAKGASQIYKNTFDAVVKTFQSRGILGFYSGVSAVIVGSAASSAVYFGTCEFGKSILSKFDYPSLLIPPTAGAMGNIISSAVMVPKELITQRMQVGAKGRSWEVLIQILEKDGIMGLYAGYFATLLRNLPAGVLSYSSFEYLKAAVLSKTKSNKLEPLQSVCCGALAGAISATLTTPLDVVKTRLMTQVHGEAANKVSAAMYSGVSATIRQIMQEEGWIGLTRGMGPRVLHSACFAAIGYFAFETAKLAILDHYLRQKEATELASAST 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19839261 19840445 - CcPI632755_08g008000.1 Cco08g0800 185274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0800 394 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 84 386 - GO:0000095(PANTHER)|GO:0005743(PANTHER)|GO:0009941(PANTHER)
Cco08g0800 394 ProSiteProfiles Solute carrier (Solcar) repeat profile. 281 375 IPR018108 -
Cco08g0800 394 FunFam protein MITOFERRINLIKE 1, chloroplastic 227 394 - -
Cco08g0800 394 SUPERFAMILY Mitochondrial carrier 99 370 IPR023395 -
Cco08g0800 394 Gene3D Mitochondrial carrier domain 53 224 IPR023395 -
Cco08g0800 394 Pfam Mitochondrial carrier protein 280 378 IPR018108 -
Cco08g0800 394 Pfam Mitochondrial carrier protein 102 185 IPR018108 -
Cco08g0800 394 Pfam Mitochondrial carrier protein 196 273 IPR018108 -
Cco08g0800 394 ProSiteProfiles Solute carrier (Solcar) repeat profile. 189 271 IPR018108 -
Cco08g0800 394 Gene3D Mitochondrial carrier domain 225 394 IPR023395 -
Cco08g0800 394 FunFam Protein MITOFERRINLIKE 1, chloroplastic 69 226 - -
Cco08g0800 394 ProSiteProfiles Solute carrier (Solcar) repeat profile. 96 182 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0800 K15111 - - csv:116404632 701.049
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0274 Cco-Chr1:2613560 Cco08g0800 Cco-Chr8:19839261 3.00E-34 dispersed
Cco04g0860 Cco-Chr4:24188982 Cco08g0800 Cco-Chr8:19839261 2.80E-29 dispersed
Cco06g1763 Cco-Chr6:28104688 Cco08g0800 Cco-Chr8:19839261 2.00E-34 dispersed
Cco08g0800 Cco-Chr8:19839261 Cco09g0618 Cco-Chr9:5445028 9.60E-11 dispersed
Cco08g0800 Cco-Chr8:19839261 Cco08g0871 Cco-Chr8:20555207 1.50E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1243 . . . . . . . . Cmo04g02550 . . . . . Sed11g1334 . . Bhi04g01803 Tan11g1171 Cmetu03g1357 . Hepe02g2779 . Lcy10g1329 Cla08g00676 Cam08g1106 Cec08g0691 Cco08g0800 Clacu08g0812 . Cre08g0616 . . Cone17ag0795 Cone20ag0392 . . . Cme03g01094 Blo17g00218 Blo18g00217 . Bda13g01526 Bpe02g01604 Bpe14g00335 Bma01g00866 Bma02g00276 . . . . . Car04g02347 . Cpe01g02106 . . . . . . . . . . . . . . . Lsi08g00608 . Chy03g00543 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006009 3 1 2 2 2 1 1 1 1 2 1 1 0 1 1 1 1 2 1 1 2 1 1 1 1 1 1 2 2 1 39