Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0801 ATGGAGTTTCTAGGACTTTGGCTTCGAAGGAGTGACAGATCTACACGGCTTTTGGGGAAGGACGAGGGGAAGGGAGCTGCGAAATTTTATCCTTTTAGCTATGCAAATGCCGACCGTGATATCGAGCAGGCATTAATTGCATTGAAGAAGGGTGCTCAACTACTAAAATATGGTCGTAAAGGAAAGCCGAAGTTCTGTCCATTTAGGCTTTCTAGTGATGAATCTTCCTTGATCTGGATTTCAAGTAAGGGTGAAAGAAGTTTGAAGTTAGCATCAATCTCACAAATAATACCTGGACAAAGAACTGCTGTCTTCGAGCGGTATCTTCGTCCTGAAAAAGATTACTTATCATTCTCTCTTATATACAACAACGGGAAGCGATCCCTTGATCTGATTTGTAAGGATAAAGTTGAGGCAGAGGCTTGGATTTCAGGCCTGAAAGCTTTAATAGCATCTGGTCAAGGAGGGCGTTCCAAAATTGATGGCTGGAGTGATGGAGGCCTCTATCTTGATGAAAGTTGTGAATTGACTTCAAATAGCCCAAGTGACAGTTCGCACAGCGTGAATAGAGATAATAGCTCTCCAGAAGTTTTTGTTAGTTTCAACGCAAATATATCTTTGAAGACTTCTCAACCTGAAAATTACATTGCAAAGTCTGAAAGAGCTCATGTATCATTGAACCAAACAAATATGCAAGTAAAGGGGTCTAGTTCTGATGTTATGCGAGTTAGTGTTTCAAGTGCTCCCAGCACCTCTAGTCATGGGTCCGCCCCCGATGATTGTGATGCTCTAGGTGATGTATACATATGGGGCGAGATTGTTGGTGACAATATAGTGAAGATTGGGGCTGAAAAAAATAGTAGTTACGTGACCCTGAGGACGGATGTGCTTCTGCCAAGACCTTTGGAGTCTAACATTGTTCTAGACATACATCATATAGCCTGTGGGGTTAGGCATGCTGCCCTAGTGACAAGGCAAGGGGAAGTTTTTACATGGGGTGAGGAATCTGGAGGCCGCCTTGGCCATGGTGTGGTGAAAGATGTAACTCAGCCTCGTATGGTTGAATCCTTGGCAGCTAGTAGTATTGATTTTGTTGCTTGTGGAGAGTTCCATACATGTGCTGTTACAATAACCGGGGAACTTTATACATGGGGTGATGGTACCCACAACGCAGGACTTCTTGGTCATGGCAGTGATGTCAGCCACTGGATACCAAAGAGAGTTTCTGGTCCGCTTGAAGGACTTCAAGTTACTTCAGTGACATGTGGTCCATGGCATACAGCTCTGGTAATGTCAACAGGTCAGCTTTTTACATTTGGTGATGGAACATTTGGTGCACTGGGCCATGGAGACAGAGAAAATATTTCATATCCAAAAGAAGTGGAATCTTTATCGGGCCTGAGGACAATTGCTGTTGCATGTGGGGTGTGGCATACTGCTGCTGTAGTTGAAGTTATTGTGACACAATCTAGTTCGAGCCTTTCATCAGGTAAACTTTTTACATGGGGTGATGGAGATAAAAATCGTCTGGGGCATGGAGATAAGGAACCCAGGCTTAAACCCACATGTGTGCCAGCACTAATTGATTATGATTTCCACAAAGTTGCTTGTGGTCACAGCATTACTGTTGGTTTGACCACTTCAGGGCAAGTTTTCTCTATGGGAAGTACTGTTTATGGACAACTTGGGAATCCCAGTGCAGATGGAAAGATACCTTGCTTGGTAGAGGATAAGCTTTTTGGGGAATCTGTTGAAGAAGTTTCATGTGGTGCATATCATGTGGTGGTATTAACGTCCAAAAATGAAGTTTATACGTGGGGAAAGGGTGCAAATGGGAGATTGGGCCATGGTGATGTTGAAGATCGTAAGACACCAACTTTGGTAGAAGCTTTGAAGGACAGACATGTGAAATATATAGCATGTGGTTCAAATTACACAGCTGCCATTTGTCTTCACAAATGGGTTTCTAGTGCTGAGCAGTCACAGTGCTCTGCTTGCAGGCAGGCATTTGGGTTTACACGGAAGAGACACAACTGTTATAATTGTGGACTTGTGCACTGCCACTCTTGCAGTTCAAGAAAAGCATTAAGGGCAGCACTTGCTCCGAATCCCGGCAAACTATATCGTGTATGTGATTCATGTTATGCAAAATTGATTAAGGCAGCAGATGCTATTAATAATAATAGGAAAAATGCTATGCCTCGCCTCTCAGGTGAGAACAAGGATAGGATTGATAAGACTGATCTGAAAATATCGAAGTCAGTTCCTTCCAACATGGATTTGATAAAGCAATTAGACAACAAAGCAGCTAAACAAGGAAAGAAGGCTGATACCTTCTCCCTTGTCCGATCCTCTCAAGCACCTTCACTATTGCAGCTCAGAGATGTTGTATTATCAACTGCTGTTGATCTGCGACGGACAGCTCCCAAACCAGTCCTCACAGCTTCCGGAGTAAGTTCTAGATCCGTGTCGCCTTTCTCAAGGAAACCAAGCCCTCCTCGATCGGCCACTCCTGTTCCTACAGCATCTGGACTTTCCTTTTCCAAAAGTATAACTGATAGTTTGAAGAAAACAAACGATCTTTTGAATCACGAAGTGCTTAAATTGCGTTCACAGGTTGAGAGCCTGAGGCAGAAATGTGAACTCCAGGAACTGGAGCTTCAGAAATCTTTGAAGAAAACACGAGAAGCTATGGCCTTGGCTGCCGAGGAATCTGGTAAATCTAAAGCAGCCAAAGAAGTCATCAAGTTACTAACTGCTCAGCTTAAAGATATGGCTGAAAGGTTACCACCTGGAGTATATGACGTTGAGAAAATGAGATCAGTTCATCTTTCAAATGGTTTGGAGTCAAATGGCGGCTACCATTTGGGTATGAATGGAGAGCGTCATTCACGATCTGATTCAGTTAGTAGCTACTCCTGTGCATCTCCAACGGCATCTGAAGCTGCTGCTTGGCAAGGAAGCTATTGCACAACTCATTCATATAGGGAGCTTTCTGGAACGAATGAAAGCACTTTGCAACAAGATAGAATTGACAATCGAGATTCTAGACTTCTAAATAGCGGAGGGGCTCAGCCAGTTAGCAGTAGTGCATCGGTGGCAGCTGTTGGTAAGGAGTCTGAGTCCTTACAAGATGGTGATAATAATTCTCAAGCCAAAACTTCTCTAATGGTTAATGCTACTCAAGTTGAGGCTGAATGGATTGAACAATATGAGCCTGGTGTATATATTACTCTTGTGGCTCTGCGGGATGGTACTCGGGATCTAAAACGTGTGCGCTTCAGCCGGAGAAGATTTGGAGAGCATCAAGCAGAAAATTGGTGGTCAGAGAACCGTGAGAAGGTATACGAGAGATATAATGTTCGCAGCTCGGACAAGTCTTCAGTTTCGGGACTGACGTCACAGAGAGCGGACGATGGAGTTTCAATAGCTTCCCAACAACTATAG 3447 43.78 MEFLGLWLRRSDRSTRLLGKDEGKGAAKFYPFSYANADRDIEQALIALKKGAQLLKYGRKGKPKFCPFRLSSDESSLIWISSKGERSLKLASISQIIPGQRTAVFERYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEAWISGLKALIASGQGGRSKIDGWSDGGLYLDESCELTSNSPSDSSHSVNRDNSSPEVFVSFNANISLKTSQPENYIAKSERAHVSLNQTNMQVKGSSSDVMRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEIVGDNIVKIGAEKNSSYVTLRTDVLLPRPLESNIVLDIHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVVKDVTQPRMVESLAASSIDFVACGEFHTCAVTITGELYTWGDGTHNAGLLGHGSDVSHWIPKRVSGPLEGLQVTSVTCGPWHTALVMSTGQLFTFGDGTFGALGHGDRENISYPKEVESLSGLRTIAVACGVWHTAAVVEVIVTQSSSSLSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYDFHKVACGHSITVGLTTSGQVFSMGSTVYGQLGNPSADGKIPCLVEDKLFGESVEEVSCGAYHVVVLTSKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYTAAICLHKWVSSAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKLYRVCDSCYAKLIKAADAINNNRKNAMPRLSGENKDRIDKTDLKISKSVPSNMDLIKQLDNKAAKQGKKADTFSLVRSSQAPSLLQLRDVVLSTAVDLRRTAPKPVLTASGVSSRSVSPFSRKPSPPRSATPVPTASGLSFSKSITDSLKKTNDLLNHEVLKLRSQVESLRQKCELQELELQKSLKKTREAMALAAEESGKSKAAKEVIKLLTAQLKDMAERLPPGVYDVEKMRSVHLSNGLESNGGYHLGMNGERHSRSDSVSSYSCASPTASEAAAWQGSYCTTHSYRELSGTNESTLQQDRIDNRDSRLLNSGGAQPVSSSASVAAVGKESESLQDGDNNSQAKTSLMVNATQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAENWWSENREKVYERYNVRSSDKSSVSGLTSQRADDGVSIASQQL 1148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19866657 19874879 + CcPI632755_08g008010.1 Cco08g0801 185275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0801 1148 MobiDBLite consensus disorder prediction 1018 1050 - -
Cco08g0801 1148 SUPERFAMILY PH domain-like 40 150 - -
Cco08g0801 1148 MobiDBLite consensus disorder prediction 952 973 - -
Cco08g0801 1148 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 184 1094 IPR051210 -
Cco08g0801 1148 Pfam Transcription factor regulating root and shoot growth via Pin3 1064 1119 IPR013591 -
Cco08g0801 1148 Gene3D - 198 489 IPR009091 -
Cco08g0801 1148 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 601 652 IPR000408 -
Cco08g0801 1148 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 327 378 IPR000408 -
Cco08g0801 1148 Coils Coil 859 893 - -
Cco08g0801 1148 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 313 323 IPR000408 -
Cco08g0801 1148 Gene3D - 490 663 IPR009091 -
Cco08g0801 1148 MobiDBLite consensus disorder prediction 1016 1050 - -
Cco08g0801 1148 Pfam FYVE zinc finger 653 718 IPR000306 GO:0046872(InterPro)
Cco08g0801 1148 Pfam Transcription factor BRX N-terminal domain 903 938 IPR027988 -
Cco08g0801 1148 FunFam PH, RCC1 and FYVE domains-containing protein 1 236 486 - -
Cco08g0801 1148 FunFam PH, RCC1 and FYVE domains-containing protein 1 487 658 - -
Cco08g0801 1148 MobiDBLite consensus disorder prediction 1126 1148 - -
Cco08g0801 1148 MobiDBLite consensus disorder prediction 813 843 - -
Cco08g0801 1148 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 472 482 IPR000408 -
Cco08g0801 1148 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 657 719 IPR017455 -
Cco08g0801 1148 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 434 485 IPR000408 -
Cco08g0801 1148 ProSiteProfiles BRX domain profile. 1065 1120 IPR013591 -
Cco08g0801 1148 SUPERFAMILY RCC1/BLIP-II 264 654 IPR009091 -
Cco08g0801 1148 CDD FYVE_like_SF 662 715 - -
Cco08g0801 1148 SMART fyve_4 652 720 IPR000306 GO:0046872(InterPro)
Cco08g0801 1148 Pfam Regulator of chromosome condensation (RCC1) repeat 379 430 IPR000408 -
Cco08g0801 1148 Pfam Regulator of chromosome condensation (RCC1) repeat 548 597 IPR000408 -
Cco08g0801 1148 Pfam Regulator of chromosome condensation (RCC1) repeat 496 544 IPR000408 -
Cco08g0801 1148 Pfam Regulator of chromosome condensation (RCC1) repeat 326 375 IPR000408 -
Cco08g0801 1148 Pfam Regulator of chromosome condensation (RCC1) repeat 602 649 IPR000408 -
Cco08g0801 1148 Pfam Regulator of chromosome condensation (RCC1) repeat 434 482 IPR000408 -
Cco08g0801 1148 Pfam Pleckstrin homology domain 42 150 IPR001849 -
Cco08g0801 1148 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 549 600 IPR000408 -
Cco08g0801 1148 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 420 430 IPR000408 -
Cco08g0801 1148 PRINTS Chromosome condensation regulator RCC1 signature 420 436 IPR000408 -
Cco08g0801 1148 PRINTS Chromosome condensation regulator RCC1 signature 538 556 IPR000408 -
Cco08g0801 1148 PRINTS Chromosome condensation regulator RCC1 signature 329 345 IPR000408 -
Cco08g0801 1148 PRINTS Chromosome condensation regulator RCC1 signature 596 617 IPR000408 -
Cco08g0801 1148 PRINTS Chromosome condensation regulator RCC1 signature 436 450 IPR000408 -
Cco08g0801 1148 PRINTS Chromosome condensation regulator RCC1 signature 379 395 IPR000408 -
Cco08g0801 1148 ProSiteProfiles PH domain profile. 118 151 IPR001849 -
Cco08g0801 1148 SUPERFAMILY FYVE/PHD zinc finger 653 729 IPR011011 -
Cco08g0801 1148 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 664 725 IPR013083 -
Cco08g0801 1148 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 497 548 IPR000408 -
Cco08g0801 1148 Gene3D - 40 156 IPR011993 -
Cco08g0801 1148 CDD PH_PLC_plant-like 39 151 - -
Cco08g0801 1148 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 379 433 IPR000408 -
Cco08g0801 1148 Coils Coil 908 928 - -
Cco08g0801 1148 MobiDBLite consensus disorder prediction 813 830 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0801 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2446 Cco-Chr2:36849903 Cco08g0801 Cco-Chr8:19866657 4.00E-296 dispersed
Cco08g0801 Cco-Chr8:19866657 Cco09g0988 Cco-Chr9:9376439 0.00E+00 dispersed
Cco08g0801 Cco-Chr8:19866657 Cco03g1309 Cco-Chr3:26050196 5.40E-304 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83