Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0802 ATGATGAGATGTATTAGGCAGATGGCAACAAAGGTCATCTCTCTAAAAAGTGCTGATAACTTGGAGATAAATTTGGAAAGGCGTGGGGATGGTTCATTATCTTCTAGCAAGAAGGTTGTGTCTCTTTGGAAGGGTCTATGGCAAATAAAGTTACCTCCTAAAGCATATATGGCGGATGATTATTGGAATCGCCAGCAGCCTCTGCTTCCCTCGCCTGGCATGCTTAAACGACCTCGTACTGATTATGAACTTCCATCGTCTGGATTGCCTACTGGCCATGAGATGCACAATTACTTAGCAAGTGATGATCGTGGTGGTCCTAGGTCTGTAAAAGATACACAAACAATTGGATCAGCATATGATCGTTATCTCCAAAGTGTGCAACTTTCTTCTTTTCCTTCCGGAGAAGTACCTACCCACGGAGAAATGGGCATGGGAAGGCCTGTTGCAAACAGAATGCCAGTTGGGAGTAGAATGCCTGGGCCTTTATTACCTGATCCTATTGTAATGAGTCGTCCTCCTGCAGTTTCTCCTGATCTTGCACCAAATGGTCGAAATATTGAGTATGGTAATCATCTGCCTGTAGATCCGATTAGCAGACCTGGACGTGAAACTGTGCCTCTTCCTCCTGATGCCTCCAACACTTTATATGTTGAAGGACTTCCTCCAGATAGTTCCCGGAGGGAAGTAGCTCATATTTTCCGCCCCTTTGTGGGATATAAAGAATTGAGACTTGTGAGCAAAGAATCTAAACATCGTGGTGGGGACCCCCTAATATTATGTTTTGTGGATTTTGCAAACCCAGCCTGTGCAGCAACTGCCATGAGTGCATTGCAAGGTTATAAAATGGACGAACAAGATCCCGAATCTAATTATTTGCGACTACAATTCTCACGACATCCAGGTCCGAGGTCTGGATCTGGAACTGGTGGCAAAAGGTACTATAGCAGGAATTTGGAGAGTTCCTGTACCCTCCAACACAAAAAATCAGTCTATTCCGCTGGTCATTCCTCGCATACGAATCTGCAATACCTCAGAGGTCGAGAGACTACTGCAAGCAATGCTATTCTATTGAGTTGTTTGTTTTTCTTGGTGATTGCATTAAGATCAAAGATGGATTCTGAATTTTCCATGGGGCCAAGTTCTGAAGCAGAACAAAAAACCCATTTGCTTGGGATTGGAGAAAAAATGGGTTCTTCAACTGCAACTGCAATGCCCTCCTTTGTTATCTCTCTTCTTTCATTGTTGTCTTTGAATCTGCCATCAAAATTTAGTGCAGAATATGTTCATTATCCACCTGTTTCTGAGCCAATAGTTCCCTATTTTCCCTTTGTATACAGACCAATCCCATCCCCATCTGAGAAGCCTTATGAACCACAACCCACATCACCACCACTAAAGCAGTCCCAACCGCCATTATCTCCTTTTGCCCAGCCTCTAGATCCCTATTTTCCTTTTGTATACATACCGATGCCATCCCCATCTCAAAAGCCTTATGAAGATGCATCACCTTCGCCGTCTCCGGTGTTCGCAAGACCTGTACCTTATTATCCTGTCCGATTTCCACCACCTCCCCCTCGACAACACCTCTATCCTCCGAATCCGATTGACCACCTTCAATCACCTTCGCCTTTGCCTCCACCTCTGCCTCTGCCTCCTTACTGA 1665 44.74 MMRCIRQMATKVISLKSADNLEINLERRGDGSLSSSKKVVSLWKGLWQIKLPPKAYMADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAVSPDLAPNGRNIEYGNHLPVDPISRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGTGGKRYYSRNLESSCTLQHKKSVYSAGHSSHTNLQYLRGRETTASNAILLSCLFFLVIALRSKMDSEFSMGPSSEAEQKTHLLGIGEKMGSSTATAMPSFVISLLSLLSLNLPSKFSAEYVHYPPVSEPIVPYFPFVYRPIPSPSEKPYEPQPTSPPLKQSQPPLSPFAQPLDPYFPFVYIPMPSPSQKPYEDASPSPSPVFARPVPYYPVRFPPPPPRQHLYPPNPIDHLQSPSPLPPPLPLPPY 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19879304 19888261 + CcPI632755_08g008020.1 Cco08g0802 185276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0802 554 Gene3D - 210 301 IPR012677 -
Cco08g0802 554 MobiDBLite consensus disorder prediction 453 474 - -
Cco08g0802 554 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 300 IPR000504 GO:0003723(InterPro)
Cco08g0802 554 MobiDBLite consensus disorder prediction 525 554 - -
Cco08g0802 554 Pfam RNA recognition motif 216 284 IPR000504 GO:0003723(InterPro)
Cco08g0802 554 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 76 310 - -
Cco08g0802 554 CDD RRM_AtNSRA_like 211 299 - -
Cco08g0802 554 SUPERFAMILY RNA-binding domain, RBD 189 311 IPR035979 GO:0003676(InterPro)
Cco08g0802 554 SMART rrm1_1 215 291 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0802 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1077 Cco-Chr5:9585544 Cco08g0802 Cco-Chr8:19879304 4.50E-49 dispersed
Cco05g2045 Cco-Chr5:29515498 Cco08g0802 Cco-Chr8:19879304 1.80E-23 dispersed
Cco08g0802 Cco-Chr8:19879304 Cco08g0807 Cco-Chr8:19930976 7.70E-06 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1253 . . . . . . . . Cmo04g02552 Cmo15g00618 . . . . Sed11g1337 . Cpe13g00671 Bhi04g01799 Tan11g1166 Cmetu03g0441 . . . . Cla08g00678 Cam08g1108 Cec08g0694 Cco08g0802 Clacu08g0814 . Cre08g0618 . . Cone17ag0793 Cone20ag0389 . . . Cme03g00377 Blo17g00216 . . Bda13g01524 . Bpe14g00337 . Bma02g00274 . . . . . Car04g02349 Car15g00561 Cpe01g02109 . . . . . . . . . . . . . . . Lsi08g00536 . Chy03g00541 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003751 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 2 3 1 1 1 1 1 2 5 1 46