Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0830 ATGATGGATTTGAACTTTACCTCCCGGAAGCCACCGCAGACGGCGCCGAGGATGGACATCGAACAGATGCCGGAGGCTCCACACCGTGGGTATCACCACCGCCGTTCCCACTCCGATACCTCCTTCCGCTTCGCTAATTTTGACGATCTTCTCCTCTTCGACCCTCCCGACATCGATTTATCATCTGCTCTTCCTTCTCCCTCGCCGTCACCGTCTCCGTCGCCGTCAGGGGCTCGTATGGCCGTCGATTCCTTCAATTCGAGGTCCCCTGAAGACGTCTCTGCCACAAAACCTAGGGCTGGAAACGGTAACTCCGCTTCCTTCTTCAGTTCTCACTACCGGAGCTTGTCGATGGATTCCGACTTCTTTGAGGGATTGGGGATGGCCGGAGATGGGAGTGACGGTGAAGTACGTGGCGGGAGAGTGACGGCGGGGGAGAAGAAGATGAGTCGTCATAGGCATAGCAATTCCATGGATGGGTCTTTGACCTCCTCGTTTGAAGCTGATTCCACCAAGAAAGCCATGGCACCTGATAAACTCGCTGAGCTTGCTTTGATGGACCCTAAAAGAGCTAAGAGGATTCTTGCAAATAGACAATCAGCTGCACGATCCAAGGAGAGGAAAATACGTTACACTAATGAACTAGAGAAGAAGGTGCAGATGCTTCAGTCAGAAGCCACTTCCCTTTCTGCTCAGGTCACAGTGTTACAGAGAGATACCACTGGATTGACTACTGAGAACAGGGAACTCAAGCTAAGGTTGCAAGCCATGGAGCAGCAAGCCCATCTGAGGGATGCTTTGAATGAGACACTGAAGGAGGAAGTGCAGCGGCTTAAGATAGTTGCGGCCCAACTGCCTGTTGCAAATGGCAACTCATTCAACATTGGAGGAGGGCTACCTCCTCAATTCCCTCCTCTCCAAACATCATCATTGCTTCAATTTGGCAACTCCCAGAATCATCATCAACAGCCACAACTGCTTCACATGTCTCAGCCTGATGCTCGAGGAGGGTCTCCCCCGTCCCAGCCTCCCGGAGTTTAA 1041 52.26 MMDLNFTSRKPPQTAPRMDIEQMPEAPHRGYHHRRSHSDTSFRFANFDDLLLFDPPDIDLSSALPSPSPSPSPSPSGARMAVDSFNSRSPEDVSATKPRAGNGNSASFFSSHYRSLSMDSDFFEGLGMAGDGSDGEVRGGRVTAGEKKMSRHRHSNSMDGSLTSSFEADSTKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEKKVQMLQSEATSLSAQVTVLQRDTTGLTTENRELKLRLQAMEQQAHLRDALNETLKEEVQRLKIVAAQLPVANGNSFNIGGGLPPQFPPLQTSSLLQFGNSQNHHQQPQLLHMSQPDARGGSPPSQPPGV 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20133291 20134939 - CcPI632755_08g008300.1 Cco08g0830 185304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0830 346 MobiDBLite consensus disorder prediction 156 170 - -
Cco08g0830 346 MobiDBLite consensus disorder prediction 296 346 - -
Cco08g0830 346 CDD bZIP_plant_RF2 190 239 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0830 346 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 187 250 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0830 346 MobiDBLite consensus disorder prediction 1 37 - -
Cco08g0830 346 SMART brlzneu 185 249 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0830 346 Gene3D - 188 241 - -
Cco08g0830 346 SUPERFAMILY Leucine zipper domain 189 241 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0830 346 MobiDBLite consensus disorder prediction 303 329 - -
Cco08g0830 346 MobiDBLite consensus disorder prediction 75 105 - -
Cco08g0830 346 FunFam Transcription factor VIP1 188 241 - -
Cco08g0830 346 Coils Coil 212 232 - -
Cco08g0830 346 Coils Coil 240 260 - -
Cco08g0830 346 MobiDBLite consensus disorder prediction 145 170 - -
Cco08g0830 346 MobiDBLite consensus disorder prediction 61 105 - -
Cco08g0830 346 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 19 330 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco08g0830 346 Pfam bZIP transcription factor 189 245 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0487 Cco-Chr2:4492821 Cco08g0830 Cco-Chr8:20133291 1.20E-41 dispersed
Cco02g0489 Cco-Chr2:4504526 Cco08g0830 Cco-Chr8:20133291 6.80E-42 dispersed
Cco06g1226 Cco-Chr6:22124807 Cco08g0830 Cco-Chr8:20133291 1.00E-16 dispersed
Cco07g0536 Cco-Chr7:6877146 Cco08g0830 Cco-Chr8:20133291 1.10E-50 dispersed
Cco08g0830 Cco-Chr8:20133291 Cco09g0965 Cco-Chr9:9108695 2.50E-87 dispersed
Cco08g0830 Cco-Chr8:20133291 Cco02g0997 Cco-Chr2:12467048 1.10E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59762 PF00170 bZIP_1 2.50E-07 CL0018 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0830 K20557 - csv:101215277 491.886