Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g0837 | ATGCTTCCACACAGAAGGAAACAATGGCCTGCAACGTACTTGATAACTGCTCCCTTCCCCACCTGCTCTAACGTCGGTTTACGATTTAACGTGCCGTTTAGCCAGAAAGGAATTGGTGAAGTCCGGTCTTGGAGAGAGAGAAAGCGCAAAAAGTTGGAGCTCTGCTCTGAGTTCTCTTCCAAGCTAAAGAAAAAACGATGGATTTCGGGTCATTCTTCAAACGCCTTTTTCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCAAGGCGTAGTTTTGAGGTGAGGCTGTCTGGAAATTCCAGGGGTAAATCTCATGGGCCAGTCCATGAGTTTAATGATGAGCCTCTGCTAATTCAGACTAGCCGTTGGGCTAGCCTTCCCCCCGAATTATTATGTGATGTGGTCCGAAGACTGGAGGCGAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACATGTGCAAAGAAATGGTCAAAAGCCCTGAGTTGTCTGGGAAAATTACCTTCCCAATCGCCTTGAAGCAGCCTGGGCCGCGTGATGGCACTATTCAATGCTTTATCAAGAGGAACAAATCCAATTTAACTTATCATCTTTATCTTTGTCTTAGTCCTGCTTTACTTGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAAAGAACCAGGAGAACTACTTCTACAGAGTATGTTATATCATTGGCTGCGGACGATATTTCAAGATCAAGCAACGGTTATATAGGAAAGCTAAGATCAAATTTTCTTGGAACCAAGTTCATTATATATGATACACAGCCTCCTTACAACAGCAACCAAATACCGACCCTCGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTCTCACCTAAGGTCCCAGCTGGAAGCTACAGCATTGCACAAATTGCGTACGAGTTGAATGTATTAGGTACGAGGGGACCCCGGAGAATGAACTGCACCATGTACTCAATCCCCACTTCATCTCTTGAGCCGGGTTGCTCGGTTCCAGGCCAGCCCGAGCTCAATCCTCGCCCCCTCGAAGACTCATTTCGTAGCATCTCATTCTCCAAGTCAATTGATCATTCAACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAATGCTTGTTGACGAAGATGGCGATGTGAAGGATCGACCCTTGATTCTCCGGAACAAGGCACCTAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAATTTTCGTGGGAGGGTGACAGTTGCATCTGTAAAGAACTTTCAGCTGATCGCTGCAACCTCACCTGCTGCAGAAGCCCCCTTAACGTCGCAGCCGCCTCCTCAGCCAGCCCAACCTACCCATTCTGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTCGGTAAGGACATGTTTACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACAAAATTGGCATGTGAATAG | 1515 | 46.86 | MLPHRRKQWPATYLITAPFPTCSNVGLRFNVPFSQKGIGEVRSWRERKRKKLELCSEFSSKLKKKRWISGHSSNAFFILRDVRDGFGSLSRRSFEVRLSGNSRGKSHGPVHEFNDEPLLIQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEMVKSPELSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMNCTMYSIPTSSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLVDEDGDVKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEAPLTSQPPPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE | 504 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 20209781 | 20215297 | + | CcPI632755_08g008370.1 | Cco08g0837 | 185311 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g0837 | 504 | MobiDBLite | consensus disorder prediction | 441 | 460 | - | - | |
Cco08g0837 | 504 | Pfam | Tub family | 186 | 499 | IPR000007 | - | |
Cco08g0837 | 504 | SUPERFAMILY | Tubby C-terminal domain-like | 174 | 504 | IPR025659 | - | |
Cco08g0837 | 504 | ProSitePatterns | Tub family signature 1. | 419 | 432 | IPR018066 | - | |
Cco08g0837 | 504 | ProSitePatterns | Tub family signature 2. | 489 | 504 | IPR018066 | - | |
Cco08g0837 | 504 | PANTHER | TUBBY-RELATED | 111 | 503 | - | - | |
Cco08g0837 | 504 | Pfam | F-box-like | 125 | 168 | IPR001810 | GO:0005515(InterPro) | |
Cco08g0837 | 504 | Gene3D | Tubby Protein; Chain A | 185 | 498 | IPR025659 | - | |
Cco08g0837 | 504 | FunFam | Tubby-like F-box protein | 182 | 504 | - | - | |
Cco08g0837 | 504 | PRINTS | Tubby superfamily signature | 401 | 418 | IPR000007 | - | |
Cco08g0837 | 504 | PRINTS | Tubby superfamily signature | 482 | 504 | IPR000007 | - | |
Cco08g0837 | 504 | PRINTS | Tubby superfamily signature | 419 | 435 | IPR000007 | - | |
Cco08g0837 | 504 | PRINTS | Tubby superfamily signature | 241 | 257 | IPR000007 | - | |
Cco08g0837 | 504 | PRINTS | Tubby superfamily signature | 257 | 281 | IPR000007 | - | |
Cco08g0837 | 504 | PRINTS | Tubby superfamily signature | 306 | 333 | IPR000007 | - | |
Cco08g0837 | 504 | PRINTS | Tubby superfamily signature | 461 | 480 | IPR000007 | - | |
Cco08g0837 | 504 | SUPERFAMILY | F-box domain | 120 | 168 | IPR036047 | GO:0005515(InterPro) | |
Cco08g0837 | 504 | CDD | F-box_AtTLP-like | 125 | 169 | - | - | |
Cco08g0837 | 504 | Gene3D | - | 120 | 175 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1720 | Cco-Chr4:32309656 | Cco08g0837 | Cco-Chr8:20209781 | 7.20E-97 | dispersed | |
Cco05g0677 | Cco-Chr5:5583842 | Cco08g0837 | Cco-Chr8:20209781 | 4.30E-120 | dispersed | |
Cco07g1101 | Cco-Chr7:24564774 | Cco08g0837 | Cco-Chr8:20209781 | 1.20E-98 | dispersed | |
Cco08g0447 | Cco-Chr8:10908332 | Cco08g0837 | Cco-Chr8:20209781 | 1.80E-196 | dispersed | |
Cco08g0837 | Cco-Chr8:20209781 | Cco09g0331 | Cco-Chr9:2926805 | 3.60E-10 | dispersed | |
Cco08g0837 | Cco-Chr8:20209781 | Cco05g2127 | Cco-Chr5:30253926 | 3.60E-119 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59764 | PF01167 | Tub | 1.70E-115 | CL0395 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g0837 | K19600 | - | csv:101203074 | 847.425 |