Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0837 ATGCTTCCACACAGAAGGAAACAATGGCCTGCAACGTACTTGATAACTGCTCCCTTCCCCACCTGCTCTAACGTCGGTTTACGATTTAACGTGCCGTTTAGCCAGAAAGGAATTGGTGAAGTCCGGTCTTGGAGAGAGAGAAAGCGCAAAAAGTTGGAGCTCTGCTCTGAGTTCTCTTCCAAGCTAAAGAAAAAACGATGGATTTCGGGTCATTCTTCAAACGCCTTTTTCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCAAGGCGTAGTTTTGAGGTGAGGCTGTCTGGAAATTCCAGGGGTAAATCTCATGGGCCAGTCCATGAGTTTAATGATGAGCCTCTGCTAATTCAGACTAGCCGTTGGGCTAGCCTTCCCCCCGAATTATTATGTGATGTGGTCCGAAGACTGGAGGCGAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACATGTGCAAAGAAATGGTCAAAAGCCCTGAGTTGTCTGGGAAAATTACCTTCCCAATCGCCTTGAAGCAGCCTGGGCCGCGTGATGGCACTATTCAATGCTTTATCAAGAGGAACAAATCCAATTTAACTTATCATCTTTATCTTTGTCTTAGTCCTGCTTTACTTGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAAAGAACCAGGAGAACTACTTCTACAGAGTATGTTATATCATTGGCTGCGGACGATATTTCAAGATCAAGCAACGGTTATATAGGAAAGCTAAGATCAAATTTTCTTGGAACCAAGTTCATTATATATGATACACAGCCTCCTTACAACAGCAACCAAATACCGACCCTCGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTCTCACCTAAGGTCCCAGCTGGAAGCTACAGCATTGCACAAATTGCGTACGAGTTGAATGTATTAGGTACGAGGGGACCCCGGAGAATGAACTGCACCATGTACTCAATCCCCACTTCATCTCTTGAGCCGGGTTGCTCGGTTCCAGGCCAGCCCGAGCTCAATCCTCGCCCCCTCGAAGACTCATTTCGTAGCATCTCATTCTCCAAGTCAATTGATCATTCAACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAATGCTTGTTGACGAAGATGGCGATGTGAAGGATCGACCCTTGATTCTCCGGAACAAGGCACCTAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAATTTTCGTGGGAGGGTGACAGTTGCATCTGTAAAGAACTTTCAGCTGATCGCTGCAACCTCACCTGCTGCAGAAGCCCCCTTAACGTCGCAGCCGCCTCCTCAGCCAGCCCAACCTACCCATTCTGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTCGGTAAGGACATGTTTACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACAAAATTGGCATGTGAATAG 1515 46.86 MLPHRRKQWPATYLITAPFPTCSNVGLRFNVPFSQKGIGEVRSWRERKRKKLELCSEFSSKLKKKRWISGHSSNAFFILRDVRDGFGSLSRRSFEVRLSGNSRGKSHGPVHEFNDEPLLIQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEMVKSPELSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMNCTMYSIPTSSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLVDEDGDVKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEAPLTSQPPPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20209781 20215297 + CcPI632755_08g008370.1 Cco08g0837 185311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0837 504 MobiDBLite consensus disorder prediction 441 460 - -
Cco08g0837 504 Pfam Tub family 186 499 IPR000007 -
Cco08g0837 504 SUPERFAMILY Tubby C-terminal domain-like 174 504 IPR025659 -
Cco08g0837 504 ProSitePatterns Tub family signature 1. 419 432 IPR018066 -
Cco08g0837 504 ProSitePatterns Tub family signature 2. 489 504 IPR018066 -
Cco08g0837 504 PANTHER TUBBY-RELATED 111 503 - -
Cco08g0837 504 Pfam F-box-like 125 168 IPR001810 GO:0005515(InterPro)
Cco08g0837 504 Gene3D Tubby Protein; Chain A 185 498 IPR025659 -
Cco08g0837 504 FunFam Tubby-like F-box protein 182 504 - -
Cco08g0837 504 PRINTS Tubby superfamily signature 401 418 IPR000007 -
Cco08g0837 504 PRINTS Tubby superfamily signature 482 504 IPR000007 -
Cco08g0837 504 PRINTS Tubby superfamily signature 419 435 IPR000007 -
Cco08g0837 504 PRINTS Tubby superfamily signature 241 257 IPR000007 -
Cco08g0837 504 PRINTS Tubby superfamily signature 257 281 IPR000007 -
Cco08g0837 504 PRINTS Tubby superfamily signature 306 333 IPR000007 -
Cco08g0837 504 PRINTS Tubby superfamily signature 461 480 IPR000007 -
Cco08g0837 504 SUPERFAMILY F-box domain 120 168 IPR036047 GO:0005515(InterPro)
Cco08g0837 504 CDD F-box_AtTLP-like 125 169 - -
Cco08g0837 504 Gene3D - 120 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1720 Cco-Chr4:32309656 Cco08g0837 Cco-Chr8:20209781 7.20E-97 dispersed
Cco05g0677 Cco-Chr5:5583842 Cco08g0837 Cco-Chr8:20209781 4.30E-120 dispersed
Cco07g1101 Cco-Chr7:24564774 Cco08g0837 Cco-Chr8:20209781 1.20E-98 dispersed
Cco08g0447 Cco-Chr8:10908332 Cco08g0837 Cco-Chr8:20209781 1.80E-196 dispersed
Cco08g0837 Cco-Chr8:20209781 Cco09g0331 Cco-Chr9:2926805 3.60E-10 dispersed
Cco08g0837 Cco-Chr8:20209781 Cco05g2127 Cco-Chr5:30253926 3.60E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59764 PF01167 Tub 1.70E-115 CL0395 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0837 K19600 - csv:101203074 847.425