Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0837 ATGCTTCCACACAGAAGGAAACAATGGCCTGCAACGTACTTGATAACTGCTCCCTTCCCCACCTGCTCTAACGTCGGTTTACGATTTAACGTGCCGTTTAGCCAGAAAGGAATTGGTGAAGTCCGGTCTTGGAGAGAGAGAAAGCGCAAAAAGTTGGAGCTCTGCTCTGAGTTCTCTTCCAAGCTAAAGAAAAAACGATGGATTTCGGGTCATTCTTCAAACGCCTTTTTCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCAAGGCGTAGTTTTGAGGTGAGGCTGTCTGGAAATTCCAGGGGTAAATCTCATGGGCCAGTCCATGAGTTTAATGATGAGCCTCTGCTAATTCAGACTAGCCGTTGGGCTAGCCTTCCCCCCGAATTATTATGTGATGTGGTCCGAAGACTGGAGGCGAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACATGTGCAAAGAAATGGTCAAAAGCCCTGAGTTGTCTGGGAAAATTACCTTCCCAATCGCCTTGAAGCAGCCTGGGCCGCGTGATGGCACTATTCAATGCTTTATCAAGAGGAACAAATCCAATTTAACTTATCATCTTTATCTTTGTCTTAGTCCTGCTTTACTTGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAAAGAACCAGGAGAACTACTTCTACAGAGTATGTTATATCATTGGCTGCGGACGATATTTCAAGATCAAGCAACGGTTATATAGGAAAGCTAAGATCAAATTTTCTTGGAACCAAGTTCATTATATATGATACACAGCCTCCTTACAACAGCAACCAAATACCGACCCTCGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTCTCACCTAAGGTCCCAGCTGGAAGCTACAGCATTGCACAAATTGCGTACGAGTTGAATGTATTAGGTACGAGGGGACCCCGGAGAATGAACTGCACCATGTACTCAATCCCCACTTCATCTCTTGAGCCGGGTTGCTCGGTTCCAGGCCAGCCCGAGCTCAATCCTCGCCCCCTCGAAGACTCATTTCGTAGCATCTCATTCTCCAAGTCAATTGATCATTCAACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAATGCTTGTTGACGAAGATGGCGATGTGAAGGATCGACCCTTGATTCTCCGGAACAAGGCACCTAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAATTTTCGTGGGAGGGTGACAGTTGCATCTGTAAAGAACTTTCAGCTGATCGCTGCAACCTCACCTGCTGCAGAAGCCCCCTTAACGTCGCAGCCGCCTCCTCAGCCAGCCCAACCTACCCATTCTGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTCGGTAAGGACATGTTTACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACAAAATTGGCATGTGAATAG 1515 46.86 MLPHRRKQWPATYLITAPFPTCSNVGLRFNVPFSQKGIGEVRSWRERKRKKLELCSEFSSKLKKKRWISGHSSNAFFILRDVRDGFGSLSRRSFEVRLSGNSRGKSHGPVHEFNDEPLLIQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEMVKSPELSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMNCTMYSIPTSSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLVDEDGDVKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEAPLTSQPPPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20209781 20215297 + CcPI632755_08g008370.1 Cco08g0837 185311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0837 504 MobiDBLite consensus disorder prediction 441 460 - -
Cco08g0837 504 Pfam Tub family 186 499 IPR000007 -
Cco08g0837 504 SUPERFAMILY Tubby C-terminal domain-like 174 504 IPR025659 -
Cco08g0837 504 ProSitePatterns Tub family signature 1. 419 432 IPR018066 -
Cco08g0837 504 ProSitePatterns Tub family signature 2. 489 504 IPR018066 -
Cco08g0837 504 PANTHER TUBBY-RELATED 111 503 - -
Cco08g0837 504 Pfam F-box-like 125 168 IPR001810 GO:0005515(InterPro)
Cco08g0837 504 Gene3D Tubby Protein; Chain A 185 498 IPR025659 -
Cco08g0837 504 FunFam Tubby-like F-box protein 182 504 - -
Cco08g0837 504 PRINTS Tubby superfamily signature 401 418 IPR000007 -
Cco08g0837 504 PRINTS Tubby superfamily signature 482 504 IPR000007 -
Cco08g0837 504 PRINTS Tubby superfamily signature 419 435 IPR000007 -
Cco08g0837 504 PRINTS Tubby superfamily signature 241 257 IPR000007 -
Cco08g0837 504 PRINTS Tubby superfamily signature 257 281 IPR000007 -
Cco08g0837 504 PRINTS Tubby superfamily signature 306 333 IPR000007 -
Cco08g0837 504 PRINTS Tubby superfamily signature 461 480 IPR000007 -
Cco08g0837 504 SUPERFAMILY F-box domain 120 168 IPR036047 GO:0005515(InterPro)
Cco08g0837 504 CDD F-box_AtTLP-like 125 169 - -
Cco08g0837 504 Gene3D - 120 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0837 K19600 - - csv:101203074 847.425
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1720 Cco-Chr4:32309656 Cco08g0837 Cco-Chr8:20209781 7.20E-97 dispersed
Cco05g0677 Cco-Chr5:5583842 Cco08g0837 Cco-Chr8:20209781 4.30E-120 dispersed
Cco07g1101 Cco-Chr7:24564774 Cco08g0837 Cco-Chr8:20209781 1.20E-98 dispersed
Cco08g0447 Cco-Chr8:10908332 Cco08g0837 Cco-Chr8:20209781 1.80E-196 dispersed
Cco08g0837 Cco-Chr8:20209781 Cco09g0331 Cco-Chr9:2926805 3.60E-10 dispersed
Cco08g0837 Cco-Chr8:20209781 Cco05g2127 Cco-Chr5:30253926 3.60E-119 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g0447 . 1 430 TUB Transcription Factor Family AT1G76900 72.5 2.2e-176 615.5
Cco05g1156 . 1 428 TUB Transcription Factor Family AT1G76900 69.7 2.2e-168 589.0
Cco08g0837 . 78 504 TUB Transcription Factor Family AT1G76900 69.0 7.9e-166 580.5
Cco05g0677 . 13 387 TUB Transcription Factor Family AT1G76900 51.2 8.6e-112 401.0
Cco05g1156 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 1.8e-101 365.9
Cco08g0447 . 173 430 TUB Transcription Factor Family AT1G25280 67.3 1.4e-93 339.7
Cco08g0837 . 247 504 TUB Transcription Factor Family AT1G25280 70.4 2.4e-93 339.0
Cco05g0677 . 154 387 TUB Transcription Factor Family AT1G25280 53.6 1.1e-69 260.4
Cco05g2127 . 186 413 TUB Transcription Factor Family AT1G25280 53.8 1.9e-66 249.6
Cco06g0552 . 154 362 TUB Transcription Factor Family AT1G25280 50.6 1.1e-53 207.2
Cco05g0677 . 98 387 TUB Transcription Factor Family AT5G18680 62.1 4.3e-96 348.2
Cco06g0552 . 98 362 TUB Transcription Factor Family AT5G18680 61.0 6.2e-87 317.8
Cco08g0837 . 184 504 TUB Transcription Factor Family AT5G18680 51.8 3.8e-84 308.5
Cco08g0447 . 112 430 TUB Transcription Factor Family AT5G18680 53.1 1.1e-83 307.0
Cco05g1156 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 4.2e-83 305.1
Cco05g2127 . 122 413 TUB Transcription Factor Family AT5G18680 51.9 4.5e-77 285.0
Cco07g1101 . 117 385 TUB Transcription Factor Family AT5G18680 50.7 1.7e-68 256.5
Cco05g2127 . 8 413 TUB Transcription Factor Family AT2G18280 59.0 4.5e-125 444.9
Cco04g1720 . 1 378 TUB Transcription Factor Family AT2G18280 58.4 5.5e-123 438.0
Cco05g1156 . 1 428 TUB Transcription Factor Family AT2G18280 52.9 4.8e-119 424.9
Cco08g0447 . 1 430 TUB Transcription Factor Family AT2G18280 51.8 2.5e-115 412.5
Cco05g0677 . 1 387 TUB Transcription Factor Family AT2G18280 53.6 3.2e-115 412.1
Cco08g0837 . 79 504 TUB Transcription Factor Family AT2G18280 50.8 1.3e-111 400.2
Cco06g0552 . 1 362 TUB Transcription Factor Family AT2G18280 51.3 2.9e-100 362.5
Cco05g0677 . 1 387 TUB Transcription Factor Family AT2G47900 68.7 5.8e-160 560.8
Cco06g0552 . 1 362 TUB Transcription Factor Family AT2G47900 67.0 8.1e-146 513.8
Cco08g0447 . 1 430 TUB Transcription Factor Family AT2G47900 55.3 1.1e-131 466.8
Cco05g1156 . 1 428 TUB Transcription Factor Family AT2G47900 56.4 6.2e-130 461.1
Cco08g0837 . 78 504 TUB Transcription Factor Family AT2G47900 56.1 5.8e-128 454.5
Cco05g2127 . 17 413 TUB Transcription Factor Family AT2G47900 55.4 7.9e-117 417.5
Cco07g1101 . 53 385 TUB Transcription Factor Family AT2G47900 52.4 7.2e-102 367.9
Cco07g0911 . 152 285 TUB Transcription Factor Family AT2G47900 57.9 1.2e-43 174.5
Cco09g0331 . 82 297 TUB Transcription Factor Family AT1G16070 61.8 3.0e-73 272.3
Cco05g1156 . 66 428 TUB Transcription Factor Family AT1G43640 67.7 5.5e-146 514.2
Cco08g0447 . 67 430 TUB Transcription Factor Family AT1G43640 69.7 9.5e-146 513.5
Cco08g0837 . 137 504 TUB Transcription Factor Family AT1G43640 66.3 6.3e-142 500.7
Cco05g0677 . 49 387 TUB Transcription Factor Family AT1G43640 53.4 3.6e-105 378.6
Cco05g2127 . 75 413 TUB Transcription Factor Family AT1G43640 50.4 6.0e-100 361.3
Cco06g0552 . 49 362 TUB Transcription Factor Family AT1G43640 50.7 1.9e-93 339.7
Cco05g2127 . 41 413 TUB Transcription Factor Family AT1G47270 64.2 1.0e-134 476.9
Cco05g1156 . 1 428 TUB Transcription Factor Family AT1G47270 52.1 2.1e-114 409.5
Cco08g0837 . 120 504 TUB Transcription Factor Family AT1G47270 55.0 1.5e-112 403.3
Cco08g0447 . 30 430 TUB Transcription Factor Family AT1G47270 51.5 4.3e-112 401.7
Cco05g0677 . 22 387 TUB Transcription Factor Family AT1G47270 52.3 5.6e-104 374.8
Cco04g1720 . 33 377 TUB Transcription Factor Family AT1G47270 51.6 2.9e-100 362.5
Cco07g1101 . 1 385 TUB Transcription Factor Family AT1G53320 71.2 1.6e-156 549.3
Cco05g0677 . 98 387 TUB Transcription Factor Family AT3G06380 63.4 3.8e-97 351.7
Cco05g1156 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 2.0e-82 302.8
Cco06g0552 . 98 362 TUB Transcription Factor Family AT3G06380 60.2 2.6e-82 302.4
Cco08g0837 . 188 504 TUB Transcription Factor Family AT3G06380 53.0 1.0e-81 300.4
Cco08g0447 . 116 430 TUB Transcription Factor Family AT3G06380 50.2 9.4e-80 293.9
Cco05g2127 . 126 413 TUB Transcription Factor Family AT3G06380 52.6 1.4e-78 290.0
Cco07g0911 . 152 285 TUB Transcription Factor Family AT3G06380 53.5 8.0e-39 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59764 PF01167 Tub 1.70E-115 CL0395 Cco TF