Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g0857 | ATGGCGGCTTCAGCTCCGGCACCGGCGACGGCCGCTTCAGTTCAAACGGCGGCGATTCCTCCTTCGACGGGCTCTGTGGCCACTGGAGGCGGGTTTTTGAGTTCGTCATTGTATGTAGGCGATCTGGACCAGAGCGTGAACGAGGGACAGCTTTTGGAACTGTTCGGCCAAGTGGCTCAGGTTGTTTCCATTAGGGTTTGCAGGGATCAGACACGTAGGCAATCGCTTGGATATGCTTATGTTAATTTTAGCAACCATCAGGATGCTGTCAATGCCATGGAACATTTGAATTTCACCCCTGTTAATGGGAAGCCTATCAGGATTATGATCTCTAATCGAGATCCTAGCATTCGAAAGAGTGGTTATGGGAATGTTTTTATCAAAAATCTAGATACATCAATTGACAACAAGGCATTACATGATACATTTGCTACTTTTGGTACTGTCCTTTCTTGTAAAGTTGCGGTTGATAGCAATGGTCAATCAAAAGGTTATGGATTTGTGCAATTTGAAAGTGAGGAGTCGGCCGAAAGTTCCATATTAAGGTTGAATGGCATGCTGCTCAATGATAAGCAAGTTTATGTTGGACATTTCATTCGTCACCAAGAAAGGATTCGAGCAAATGGATCGCAGTTTACTAATGTTTATGTGAAAAACTTACCAGAAACTACCACTGATGATGACCTAAAAAATCTTTTTGCCGCACATGGTACCATTACCAGTGCTATTGTCATGACAGATTCAAATGGGAAGTCCAAATGTTTTGGTTTTGTGAACTTTCAGAACACAGAATCTGCTGCTGCTGCAGTTGAAAAGTTGAACGGTACTGTCTTGGGTGATGACAAGATTTTGTACGTAGGCAGGGCTCAAAGGAAAGCAGAAAGGGAGGCCGAGTTGAAAGCAAAATTTGAACAGGAAAGAAAGAGTAGATTTGAAAAATTACAAGGTGCTAATTTGTACATAAAAAATCTTGATGATCATATTGATGATGAGAAGCTTAAAGAGTTATTCTCTGAGTATGGAACAATCACATCATGCAAGGTCATGCTTGACCAACATGGACTGAGCAAGGGGTCTGGTTTTGTTGCCTTTTCTTCGCCAGATGAAGCAACCAGAGCTTTAAATGAAATGAATGGAAAGATGAAAGGAAGAAAGCCTTTGTATGTGGCTGTTGCCCAGCGCAAAGAAGAAAGAAAAGCTCGGCTGCAGGCGCAATTTGCTCAAATTCGAGCAACAGGTGGAATATCGTCTTTGCCTTCGGGAATGGCAGGATTTCATCCCGGGCCACCTCGAGTTTCACCTCAACAGGTCTATTTTGGTCAAGGAAACCCTGGGCTAGTGCCTCCACAACCTACTGGATATGGCTTCCAGCCTCAACTCATGAGCGGGATGCGACCTAGTATGGGCCCGAACTTCCTCATGCCTTACCAGTTTCAAAGGCAAGGACAGGCCGGGCCACGCTCAGGGATTAGGCGAGGTGGAAATTCACAATCTGTACAGCAGCAGTTATTGATTCGTGGCTCCGGACAAGGCTTTAGATACATCAACAATGCACGAAATGGATTAGAGCCGCCCGTCTTGCCCCAAGGTCTTGTTGGTCCAATGATGCCTCTAGCTTTTGATAGTTCTGGAATGTCTAGCTCCCCTATTGACATCCAACGATCAAGGGCCGTGCCTACTTCAACGCTCGCATCTGCATTAGCTTCTGCTACACTGGAAAACCAGCGTGTGATGCTGGGCGAGCAGTTGTATCCACTCGTGGAACGTCTTGAGCCAGGTCATGCAGCTAAGGTTACCGGAATGTTGCTGGAGATGGATCAACCAGAGGTGCTTCATCTCATCGAGTCACCTGATGACTTGAAGAGTAAAGTGGCTGAGGCAATGGAAGTCCTCCGCAAAGCTTCGTCGGAACCCGAGCTTTCTGATCAGCTTGGTGCATTGGCCCTGACCAAATGA | 1956 | 45.96 | MAASAPAPATAASVQTAAIPPSTGSVATGGGFLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSNHQDAVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGYGNVFIKNLDTSIDNKALHDTFATFGTVLSCKVAVDSNGQSKGYGFVQFESEESAESSILRLNGMLLNDKQVYVGHFIRHQERIRANGSQFTNVYVKNLPETTTDDDLKNLFAAHGTITSAIVMTDSNGKSKCFGFVNFQNTESAAAAVEKLNGTVLGDDKILYVGRAQRKAEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATRALNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRATGGISSLPSGMAGFHPGPPRVSPQQVYFGQGNPGLVPPQPTGYGFQPQLMSGMRPSMGPNFLMPYQFQRQGQAGPRSGIRRGGNSQSVQQQLLIRGSGQGFRYINNARNGLEPPVLPQGLVGPMMPLAFDSSGMSSSPIDIQRSRAVPTSTLASALASATLENQRVMLGEQLYPLVERLEPGHAAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLRKASSEPELSDQLGALALTK | 651 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 20441841 | 20444908 | + | CcPI632755_08g008570.1 | Cco08g0857 | 185331 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g0857 | 651 | SUPERFAMILY | PABC (PABP) domain | 563 | 638 | IPR036053 | GO:0003723(InterPro) | |
Cco08g0857 | 651 | SMART | poly_2 | 571 | 634 | IPR002004 | GO:0003723(InterPro) | |
Cco08g0857 | 651 | FunFam | Polyadenylate-binding protein | 118 | 204 | - | - | |
Cco08g0857 | 651 | SUPERFAMILY | RNA-binding domain, RBD | 212 | 397 | IPR035979 | GO:0003676(InterPro) | |
Cco08g0857 | 651 | Gene3D | - | 555 | 636 | - | - | |
Cco08g0857 | 651 | SMART | rrm1_1 | 318 | 390 | IPR000504 | GO:0003723(InterPro) | |
Cco08g0857 | 651 | SMART | rrm1_1 | 36 | 109 | IPR000504 | GO:0003723(InterPro) | |
Cco08g0857 | 651 | SMART | rrm1_1 | 214 | 287 | IPR000504 | GO:0003723(InterPro) | |
Cco08g0857 | 651 | SMART | rrm1_1 | 124 | 196 | IPR000504 | GO:0003723(InterPro) | |
Cco08g0857 | 651 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 559 | 636 | IPR002004 | GO:0003723(InterPro) | |
Cco08g0857 | 651 | FunFam | Polyadenylate-binding protein | 555 | 637 | - | - | |
Cco08g0857 | 651 | FunFam | Polyadenylate-binding protein | 300 | 405 | - | - | |
Cco08g0857 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 213 | 291 | IPR000504 | GO:0003723(InterPro) | |
Cco08g0857 | 651 | CDD | RRM3_I_PABPs | 212 | 292 | - | - | |
Cco08g0857 | 651 | Pfam | RNA recognition motif | 215 | 283 | IPR000504 | GO:0003723(InterPro) | |
Cco08g0857 | 651 | Pfam | RNA recognition motif | 125 | 193 | IPR000504 | GO:0003723(InterPro) | |
Cco08g0857 | 651 | Pfam | RNA recognition motif | 319 | 387 | IPR000504 | GO:0003723(InterPro) | |
Cco08g0857 | 651 | Pfam | RNA recognition motif | 37 | 107 | IPR000504 | GO:0003723(InterPro) | |
Cco08g0857 | 651 | Coils | Coil | 392 | 412 | - | - | |
Cco08g0857 | 651 | Gene3D | - | 31 | 123 | IPR012677 | - | |
Cco08g0857 | 651 | FunFam | Polyadenylate-binding protein | 205 | 299 | - | - | |
Cco08g0857 | 651 | Gene3D | - | 299 | 403 | IPR012677 | - | |
Cco08g0857 | 651 | Gene3D | - | 124 | 197 | IPR012677 | - | |
Cco08g0857 | 651 | Coils | Coil | 286 | 306 | - | - | |
Cco08g0857 | 651 | FunFam | Polyadenylate-binding protein | 12 | 117 | - | - | |
Cco08g0857 | 651 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 304 | 321 | IPR002343 | GO:0003723(InterPro)|GO:1990904(InterPro) | |
Cco08g0857 | 651 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 213 | 228 | IPR002343 | GO:0003723(InterPro)|GO:1990904(InterPro) | |
Cco08g0857 | 651 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 322 | 337 | IPR002343 | GO:0003723(InterPro)|GO:1990904(InterPro) | |
Cco08g0857 | 651 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 337 | 349 | IPR002343 | GO:0003723(InterPro)|GO:1990904(InterPro) | |
Cco08g0857 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 317 | 394 | IPR000504 | GO:0003723(InterPro) | |
Cco08g0857 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 123 | 195 | IPR000504 | GO:0003723(InterPro) | |
Cco08g0857 | 651 | SMART | rrm2_1 | 36 | 109 | IPR003954 | GO:0003676(InterPro) | |
Cco08g0857 | 651 | SMART | rrm2_1 | 318 | 389 | IPR003954 | GO:0003676(InterPro) | |
Cco08g0857 | 651 | SMART | rrm2_1 | 214 | 286 | IPR003954 | GO:0003676(InterPro) | |
Cco08g0857 | 651 | SMART | rrm2_1 | 124 | 196 | IPR003954 | GO:0003676(InterPro) | |
Cco08g0857 | 651 | PANTHER | RNA BINDING PROTEIN | 213 | 466 | - | GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER) | |
Cco08g0857 | 651 | Pfam | Poly-adenylate binding protein, unique domain | 566 | 631 | IPR002004 | GO:0003723(InterPro) | |
Cco08g0857 | 651 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 35 | 632 | IPR006515 | GO:0003723(InterPro) | |
Cco08g0857 | 651 | CDD | RRM2_I_PABPs | 121 | 197 | IPR045305 | - | |
Cco08g0857 | 651 | CDD | RRM4_I_PABPs | 316 | 394 | - | - | |
Cco08g0857 | 651 | SUPERFAMILY | RNA-binding domain, RBD | 35 | 200 | IPR035979 | GO:0003676(InterPro) | |
Cco08g0857 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 35 | 113 | IPR000504 | GO:0003723(InterPro) | |
Cco08g0857 | 651 | Gene3D | - | 199 | 298 | IPR012677 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0662 | Cco-Chr2:6645631 | Cco08g0857 | Cco-Chr8:20441841 | 9.80E-186 | dispersed | |
Cco05g1180 | Cco-Chr5:10936911 | Cco08g0857 | Cco-Chr8:20441841 | 1.60E-189 | dispersed | |
Cco08g0857 | Cco-Chr8:20441841 | Cco10g1947 | Cco-Chr10:33026718 | 1.00E-121 | dispersed | |
Cco08g0857 | Cco-Chr8:20441841 | Cco08g0860 | Cco-Chr8:20460481 | 6.70E-09 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g0857 | K13126 | - | csv:101219081 | 1165.6 |