Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0857 ATGGCGGCTTCAGCTCCGGCACCGGCGACGGCCGCTTCAGTTCAAACGGCGGCGATTCCTCCTTCGACGGGCTCTGTGGCCACTGGAGGCGGGTTTTTGAGTTCGTCATTGTATGTAGGCGATCTGGACCAGAGCGTGAACGAGGGACAGCTTTTGGAACTGTTCGGCCAAGTGGCTCAGGTTGTTTCCATTAGGGTTTGCAGGGATCAGACACGTAGGCAATCGCTTGGATATGCTTATGTTAATTTTAGCAACCATCAGGATGCTGTCAATGCCATGGAACATTTGAATTTCACCCCTGTTAATGGGAAGCCTATCAGGATTATGATCTCTAATCGAGATCCTAGCATTCGAAAGAGTGGTTATGGGAATGTTTTTATCAAAAATCTAGATACATCAATTGACAACAAGGCATTACATGATACATTTGCTACTTTTGGTACTGTCCTTTCTTGTAAAGTTGCGGTTGATAGCAATGGTCAATCAAAAGGTTATGGATTTGTGCAATTTGAAAGTGAGGAGTCGGCCGAAAGTTCCATATTAAGGTTGAATGGCATGCTGCTCAATGATAAGCAAGTTTATGTTGGACATTTCATTCGTCACCAAGAAAGGATTCGAGCAAATGGATCGCAGTTTACTAATGTTTATGTGAAAAACTTACCAGAAACTACCACTGATGATGACCTAAAAAATCTTTTTGCCGCACATGGTACCATTACCAGTGCTATTGTCATGACAGATTCAAATGGGAAGTCCAAATGTTTTGGTTTTGTGAACTTTCAGAACACAGAATCTGCTGCTGCTGCAGTTGAAAAGTTGAACGGTACTGTCTTGGGTGATGACAAGATTTTGTACGTAGGCAGGGCTCAAAGGAAAGCAGAAAGGGAGGCCGAGTTGAAAGCAAAATTTGAACAGGAAAGAAAGAGTAGATTTGAAAAATTACAAGGTGCTAATTTGTACATAAAAAATCTTGATGATCATATTGATGATGAGAAGCTTAAAGAGTTATTCTCTGAGTATGGAACAATCACATCATGCAAGGTCATGCTTGACCAACATGGACTGAGCAAGGGGTCTGGTTTTGTTGCCTTTTCTTCGCCAGATGAAGCAACCAGAGCTTTAAATGAAATGAATGGAAAGATGAAAGGAAGAAAGCCTTTGTATGTGGCTGTTGCCCAGCGCAAAGAAGAAAGAAAAGCTCGGCTGCAGGCGCAATTTGCTCAAATTCGAGCAACAGGTGGAATATCGTCTTTGCCTTCGGGAATGGCAGGATTTCATCCCGGGCCACCTCGAGTTTCACCTCAACAGGTCTATTTTGGTCAAGGAAACCCTGGGCTAGTGCCTCCACAACCTACTGGATATGGCTTCCAGCCTCAACTCATGAGCGGGATGCGACCTAGTATGGGCCCGAACTTCCTCATGCCTTACCAGTTTCAAAGGCAAGGACAGGCCGGGCCACGCTCAGGGATTAGGCGAGGTGGAAATTCACAATCTGTACAGCAGCAGTTATTGATTCGTGGCTCCGGACAAGGCTTTAGATACATCAACAATGCACGAAATGGATTAGAGCCGCCCGTCTTGCCCCAAGGTCTTGTTGGTCCAATGATGCCTCTAGCTTTTGATAGTTCTGGAATGTCTAGCTCCCCTATTGACATCCAACGATCAAGGGCCGTGCCTACTTCAACGCTCGCATCTGCATTAGCTTCTGCTACACTGGAAAACCAGCGTGTGATGCTGGGCGAGCAGTTGTATCCACTCGTGGAACGTCTTGAGCCAGGTCATGCAGCTAAGGTTACCGGAATGTTGCTGGAGATGGATCAACCAGAGGTGCTTCATCTCATCGAGTCACCTGATGACTTGAAGAGTAAAGTGGCTGAGGCAATGGAAGTCCTCCGCAAAGCTTCGTCGGAACCCGAGCTTTCTGATCAGCTTGGTGCATTGGCCCTGACCAAATGA 1956 45.96 MAASAPAPATAASVQTAAIPPSTGSVATGGGFLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSNHQDAVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGYGNVFIKNLDTSIDNKALHDTFATFGTVLSCKVAVDSNGQSKGYGFVQFESEESAESSILRLNGMLLNDKQVYVGHFIRHQERIRANGSQFTNVYVKNLPETTTDDDLKNLFAAHGTITSAIVMTDSNGKSKCFGFVNFQNTESAAAAVEKLNGTVLGDDKILYVGRAQRKAEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATRALNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRATGGISSLPSGMAGFHPGPPRVSPQQVYFGQGNPGLVPPQPTGYGFQPQLMSGMRPSMGPNFLMPYQFQRQGQAGPRSGIRRGGNSQSVQQQLLIRGSGQGFRYINNARNGLEPPVLPQGLVGPMMPLAFDSSGMSSSPIDIQRSRAVPTSTLASALASATLENQRVMLGEQLYPLVERLEPGHAAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLRKASSEPELSDQLGALALTK 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20441841 20444908 + CcPI632755_08g008570.1 Cco08g0857 185331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0857 651 SUPERFAMILY PABC (PABP) domain 563 638 IPR036053 GO:0003723(InterPro)
Cco08g0857 651 SMART poly_2 571 634 IPR002004 GO:0003723(InterPro)
Cco08g0857 651 FunFam Polyadenylate-binding protein 118 204 - -
Cco08g0857 651 SUPERFAMILY RNA-binding domain, RBD 212 397 IPR035979 GO:0003676(InterPro)
Cco08g0857 651 Gene3D - 555 636 - -
Cco08g0857 651 SMART rrm1_1 318 390 IPR000504 GO:0003723(InterPro)
Cco08g0857 651 SMART rrm1_1 36 109 IPR000504 GO:0003723(InterPro)
Cco08g0857 651 SMART rrm1_1 214 287 IPR000504 GO:0003723(InterPro)
Cco08g0857 651 SMART rrm1_1 124 196 IPR000504 GO:0003723(InterPro)
Cco08g0857 651 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 559 636 IPR002004 GO:0003723(InterPro)
Cco08g0857 651 FunFam Polyadenylate-binding protein 555 637 - -
Cco08g0857 651 FunFam Polyadenylate-binding protein 300 405 - -
Cco08g0857 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723(InterPro)
Cco08g0857 651 CDD RRM3_I_PABPs 212 292 - -
Cco08g0857 651 Pfam RNA recognition motif 215 283 IPR000504 GO:0003723(InterPro)
Cco08g0857 651 Pfam RNA recognition motif 125 193 IPR000504 GO:0003723(InterPro)
Cco08g0857 651 Pfam RNA recognition motif 319 387 IPR000504 GO:0003723(InterPro)
Cco08g0857 651 Pfam RNA recognition motif 37 107 IPR000504 GO:0003723(InterPro)
Cco08g0857 651 Coils Coil 392 412 - -
Cco08g0857 651 Gene3D - 31 123 IPR012677 -
Cco08g0857 651 FunFam Polyadenylate-binding protein 205 299 - -
Cco08g0857 651 Gene3D - 299 403 IPR012677 -
Cco08g0857 651 Gene3D - 124 197 IPR012677 -
Cco08g0857 651 Coils Coil 286 306 - -
Cco08g0857 651 FunFam Polyadenylate-binding protein 12 117 - -
Cco08g0857 651 PRINTS Paraneoplastic encephalomyelitis antigen family signature 304 321 IPR002343 GO:0003723(InterPro)|GO:1990904(InterPro)
Cco08g0857 651 PRINTS Paraneoplastic encephalomyelitis antigen family signature 213 228 IPR002343 GO:0003723(InterPro)|GO:1990904(InterPro)
Cco08g0857 651 PRINTS Paraneoplastic encephalomyelitis antigen family signature 322 337 IPR002343 GO:0003723(InterPro)|GO:1990904(InterPro)
Cco08g0857 651 PRINTS Paraneoplastic encephalomyelitis antigen family signature 337 349 IPR002343 GO:0003723(InterPro)|GO:1990904(InterPro)
Cco08g0857 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 394 IPR000504 GO:0003723(InterPro)
Cco08g0857 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 195 IPR000504 GO:0003723(InterPro)
Cco08g0857 651 SMART rrm2_1 36 109 IPR003954 GO:0003676(InterPro)
Cco08g0857 651 SMART rrm2_1 318 389 IPR003954 GO:0003676(InterPro)
Cco08g0857 651 SMART rrm2_1 214 286 IPR003954 GO:0003676(InterPro)
Cco08g0857 651 SMART rrm2_1 124 196 IPR003954 GO:0003676(InterPro)
Cco08g0857 651 PANTHER RNA BINDING PROTEIN 213 466 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Cco08g0857 651 Pfam Poly-adenylate binding protein, unique domain 566 631 IPR002004 GO:0003723(InterPro)
Cco08g0857 651 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 35 632 IPR006515 GO:0003723(InterPro)
Cco08g0857 651 CDD RRM2_I_PABPs 121 197 IPR045305 -
Cco08g0857 651 CDD RRM4_I_PABPs 316 394 - -
Cco08g0857 651 SUPERFAMILY RNA-binding domain, RBD 35 200 IPR035979 GO:0003676(InterPro)
Cco08g0857 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723(InterPro)
Cco08g0857 651 Gene3D - 199 298 IPR012677 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0662 Cco-Chr2:6645631 Cco08g0857 Cco-Chr8:20441841 9.80E-186 dispersed
Cco05g1180 Cco-Chr5:10936911 Cco08g0857 Cco-Chr8:20441841 1.60E-189 dispersed
Cco08g0857 Cco-Chr8:20441841 Cco10g1947 Cco-Chr10:33026718 1.00E-121 dispersed
Cco08g0857 Cco-Chr8:20441841 Cco08g0860 Cco-Chr8:20460481 6.70E-09 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0857 K13126 - csv:101219081 1165.6