Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0863 ATGGAAGGGGTAATCCATCAATTTCTTGAACGATGGCTGTTGTACGTTATAGCTATGTGCTTAAGCTTAATAATAGGTAGTTCATTAGTCGCTTCTCTCTCCCCTGATGGAGAAGCGCTTCTCTCTCTCATTGCTGCTACTGGTTCTTCTGTAGCATCATCTTCTTCTGTTCTTGCTTCTTGGAATCCATCTAGCCAAAACCCTTGTGCTTGGGAAGGAATCACTTGCTCTCCTCAGAACAGAGTCATTTCACTATCTCTCCCTAAAACATTCCTAAACCTCTCGTTTTTGCCTCCTGAGTTGTCTTCTCTATCTTCTCTGCAACTTCTTAATCTATCATCCACCAATGTATCTGGTTCAATCCCTCCTTCTTTTGGCCTACTCACCCATCTTCGCTTGTTGGACCTATCTTCCAACAATCTCTATGGCCCTATTCCTCCTCAGCTTGGTTCTCTTTCTTCACTTCAATTCCTTTTCCTTAATTCCAATAGACTGTCTGGTAAGATTCCTCCTCAGCTTTCTAATCTGACTTCTCTGCAAAGTCTTTGCCTCCAAGACAATCAGTTTAACGGCTCCATACCATCGCAGTTTGGTTCTTTGCTGTCCCTCCAAGAGTTTCGAATAGGAGGGAATCCATATCTTTCTGGAGAAATTCCACCACAAATAGGGCTGCTTACTAACCTCACTACATTTGGGGCAGCGGCTACTGCTTTATCTGGGGCTATACCGTCTACATTTGGGAACCTAATCAACCTCCAAACTTTGTCGCTCTATGATACTGAGATGTCGGGTTCAATACCTCCTGAGTTGGGACTTTGTTCCGAGTTAAGGGATTTGTATTTACATATGAACAAGCTCACTGGTAATATTCCTCCTCAGCTGGGTAGGTTGCAGAAGCTAACTAGTTTGTTTCTATGGGGTAATGCTCTATCAGGGGCGATACCATCTGAAATTTCGAATTGTTCGGCTCTTGTTGTTTTTGATGCTTCAGAGAATGATCTTTCTGGGGAAATTCCAAGTGATTTGGGGAAGTTAGTTGTTCTTGAACAGTTTCACATATCTGACAATTCAATCTCGGGCTCGATACCATGGCAGTTGGGCAACTGCACAAGCTTAACTGCCCTTCAGCTTGATAATAATCAATTATCAGGTGTAATTCCATCACAACTTGGCAATTTGAACTCCCTGCAAAGTTTTTTCTTATGGGGCAATTCTGTATCAGGAACTGTACCATCTTCCTTTGGCAACTGCACTGAGTTGTATGCCCTTGATCTTTCAAGAAACAAGCTCACTGGGATTATCCCAGAAGAAATTTTCAGCTTGAAGAAGTTGAGCAAGCTATTGCTCCTTGGAAATTCTTTATCTGGTGGGTTGCCTCAAAGTGTTGCGAATTGTCAATCATTGGTGAGGTTGAGGGTTGGAGAAAACCAGCTTTCAGGCCAGATTCCGAAGGAGGTAGGCCGGTTGCAAAATCTTGTCTTTCTTGACTTGTATATGAATCATTTTTCGGGTCGTCTTCCGCCTGAGATTGCTAATATTACAGTTCTTGAGCTACTTGATGTGCATAATAATTATATAACTGGGGAAATTCCTCCCCAGCTTGGAGAATTGGTGAACTTGGAGCAGCTTGATCTCAGTCGAAACAGCTTCACTGGTGAAATTCCTCAGAGCTTTGGAAATTTCAGTTATTTGAATAAACTTATACTCAATAATAATCTACTGACAGGGTCAATCCCAAAGTCTATTAAGAACCTGGAGAAACTAACTCTACTTGATTTGAGTTGCAACAGTCTTTCTGGCACTATACCACCAGAAATTGGTTACATGAAGAGCTTGTCTATCAGTTTGGACTTGAGCTCAAACAGGATAAGCGGAGAAATTCCCGAGACGATGTCCAGTTTGACACAGTTACAGTCACTTGATCTTTCCAATAACAGGCTTTATGGAAATATTAAAGTGTTGGGTCTCTTGACTAGTCTCACGTCCCTTAATATCTCCTACAACAATTTCTCAGGTCCCATGCCTGTAACACCATTTTTTAGTACTCTATCAGAAGATTCATATTATCAAAACCTGAATCTCTGTGAATCACTTGATGGGTTTACTTGTTCCTCAAAATCAATGCACAGAAATGGCTTGAAGTCTGCAAAAGCTGCTGCTTTTATCTTCATCATTCTTGCTGCAGTTGTCGTCATACTTTTTGCTTTGTGGATGCTAGTTTCACGAAATCGCAAGTACATGGAACAGAAACATTCTGGGACATTGTCCTCTGCATCGGCCACCGAGGATTTCTCTTATCCATGGACCTTCATCCCGTTTCAGAAGCTCAACTTTACCATAGATAACATCTTGGAATCAATGAAAGATGAAAATATAATTGGAAAAGGTTGCTCTGGGGTTGTTTATAAAGCAGATATGCCCAATGGTGAATTAGTTGCCGTGAAGAAACTGTGGAAAACAAAGCAAGATGAAGAAGCAGTCGACTCGTGTGCTGCAGAGATTCAAATTCTCGGGCATATTCGACATCGTAACATTGTGAAACTCATAGGTTATTGTTCCAATAGAAGTGTCAAGATACTTCTCTACAACTACATTTCAAATGGTAATCTGCAACAACTCTTGCAAGGAAACAGAAATCTGGACTGGGAGACAAGGTATAAAATTGCAGTTGGGACGGCTCAGGGATTGGCTTATCTTCATCATGATTGCGTGCCTGCAATTCTTCACAGGGATGTCAAATGCAATAACATACTTCTAGACTCAAAGTTTGAAGCTTATCTAGCAGATTTTGGCCTGGCAAAGTTGATGAACACCCCAAGTTATCACCATGCGATTTCGAGAGTAGCCGGGTCCTACGGTTATATCGCCCCAGAATACGGATATACTATGAACATCACCGAGAAGAGTGATGTCTATAGCTATGGAGTTGTTTTACTAGAGATACTAAGTGGGCGTAGTGCAATCGAGACACAAGTTGGAGATGGCCTTCACATTGTTGAGTGGGTGAAGAAGAAGATGTCAAGTTTTGAACCCGCCATAACAATACTCGATACAAAGCTCCAGGGTTTACCAGATCAGATGGTGCAAGAAATGCTTCAAACACTTGGAATAGCAATGTTTTGTGTGAACTCTTCTCCAGCAGAAAGGCCAACAATGAAGGAAGTGGTAGCATTATTGATGGAGGTGAAGAGTCCTCCAGAAGAATGGGGGAAAACCTCCCAACCTCTAATAAAGCAGTCCTCAAATTTAAGTTCAAATAATACTTTCTTTTCCACAAGAAAATTGGGGTAA 3291 41.57 MEGVIHQFLERWLLYVIAMCLSLIIGSSLVASLSPDGEALLSLIAATGSSVASSSSVLASWNPSSQNPCAWEGITCSPQNRVISLSLPKTFLNLSFLPPELSSLSSLQLLNLSSTNVSGSIPPSFGLLTHLRLLDLSSNNLYGPIPPQLGSLSSLQFLFLNSNRLSGKIPPQLSNLTSLQSLCLQDNQFNGSIPSQFGSLLSLQEFRIGGNPYLSGEIPPQIGLLTNLTTFGAAATALSGAIPSTFGNLINLQTLSLYDTEMSGSIPPELGLCSELRDLYLHMNKLTGNIPPQLGRLQKLTSLFLWGNALSGAIPSEISNCSALVVFDASENDLSGEIPSDLGKLVVLEQFHISDNSISGSIPWQLGNCTSLTALQLDNNQLSGVIPSQLGNLNSLQSFFLWGNSVSGTVPSSFGNCTELYALDLSRNKLTGIIPEEIFSLKKLSKLLLLGNSLSGGLPQSVANCQSLVRLRVGENQLSGQIPKEVGRLQNLVFLDLYMNHFSGRLPPEIANITVLELLDVHNNYITGEIPPQLGELVNLEQLDLSRNSFTGEIPQSFGNFSYLNKLILNNNLLTGSIPKSIKNLEKLTLLDLSCNSLSGTIPPEIGYMKSLSISLDLSSNRISGEIPETMSSLTQLQSLDLSNNRLYGNIKVLGLLTSLTSLNISYNNFSGPMPVTPFFSTLSEDSYYQNLNLCESLDGFTCSSKSMHRNGLKSAKAAAFIFIILAAVVVILFALWMLVSRNRKYMEQKHSGTLSSASATEDFSYPWTFIPFQKLNFTIDNILESMKDENIIGKGCSGVVYKADMPNGELVAVKKLWKTKQDEEAVDSCAAEIQILGHIRHRNIVKLIGYCSNRSVKILLYNYISNGNLQQLLQGNRNLDWETRYKIAVGTAQGLAYLHHDCVPAILHRDVKCNNILLDSKFEAYLADFGLAKLMNTPSYHHAISRVAGSYGYIAPEYGYTMNITEKSDVYSYGVVLLEILSGRSAIETQVGDGLHIVEWVKKKMSSFEPAITILDTKLQGLPDQMVQEMLQTLGIAMFCVNSSPAERPTMKEVVALLMEVKSPPEEWGKTSQPLIKQSSNLSSNNTFFSTRKLG 1096
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20473261 20476834 - CcPI632755_08g008630.1 Cco08g0863 185337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0863 1096 Gene3D Transferase(Phosphotransferase) domain 1 865 1079 - -
Cco08g0863 1096 Pfam Leucine Rich Repeat 299 321 IPR001611 GO:0005515(InterPro)
Cco08g0863 1096 Pfam Leucine Rich Repeat 154 176 IPR001611 GO:0005515(InterPro)
Cco08g0863 1096 Pfam Leucine Rich Repeat 348 369 IPR001611 GO:0005515(InterPro)
Cco08g0863 1096 Pfam Leucine Rich Repeat 276 297 IPR001611 GO:0005515(InterPro)
Cco08g0863 1096 Pfam Leucine Rich Repeat 659 675 IPR001611 GO:0005515(InterPro)
Cco08g0863 1096 Pfam Leucine Rich Repeat 130 152 IPR001611 GO:0005515(InterPro)
Cco08g0863 1096 Pfam Leucine Rich Repeat 516 537 IPR001611 GO:0005515(InterPro)
Cco08g0863 1096 Pfam Leucine Rich Repeat 371 393 IPR001611 GO:0005515(InterPro)
Cco08g0863 1096 Pfam Leucine Rich Repeat 106 127 IPR001611 GO:0005515(InterPro)
Cco08g0863 1096 Pfam Leucine Rich Repeat 564 585 IPR001611 GO:0005515(InterPro)
Cco08g0863 1096 Pfam Leucine Rich Repeat 491 512 IPR001611 GO:0005515(InterPro)
Cco08g0863 1096 Pfam Leucine Rich Repeat 178 200 IPR001611 GO:0005515(InterPro)
Cco08g0863 1096 Pfam Leucine Rich Repeat 539 561 IPR001611 GO:0005515(InterPro)
Cco08g0863 1096 Gene3D Ribonuclease Inhibitor 387 482 IPR032675 -
Cco08g0863 1096 Gene3D Ribonuclease Inhibitor 579 705 IPR032675 -
Cco08g0863 1096 Gene3D Ribonuclease Inhibitor 483 578 IPR032675 -
Cco08g0863 1096 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 656 1062 IPR050647 -
Cco08g0863 1096 Gene3D Ribonuclease Inhibitor 289 386 IPR032675 -
Cco08g0863 1096 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 443 512 - -
Cco08g0863 1096 ProSiteProfiles Protein kinase domain profile. 787 1077 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g0863 1096 PRINTS Leucine-rich repeat signature 420 433 - -
Cco08g0863 1096 PRINTS Leucine-rich repeat signature 634 647 - -
Cco08g0863 1096 SUPERFAMILY L domain-like 386 698 - -
Cco08g0863 1096 Pfam Leucine rich repeat 588 647 IPR001611 GO:0005515(InterPro)
Cco08g0863 1096 Pfam Leucine rich repeat 395 454 IPR001611 GO:0005515(InterPro)
Cco08g0863 1096 SMART LRR_typ_2 369 393 IPR003591 -
Cco08g0863 1096 SMART LRR_typ_2 417 441 IPR003591 -
Cco08g0863 1096 SMART LRR_typ_2 489 512 IPR003591 -
Cco08g0863 1096 SMART LRR_typ_2 176 200 IPR003591 -
Cco08g0863 1096 SMART LRR_typ_2 537 560 IPR003591 -
Cco08g0863 1096 SMART LRR_typ_2 585 609 IPR003591 -
Cco08g0863 1096 SMART LRR_typ_2 152 175 IPR003591 -
Cco08g0863 1096 SMART LRR_typ_2 297 321 IPR003591 -
Cco08g0863 1096 SMART LRR_typ_2 634 659 IPR003591 -
Cco08g0863 1096 SMART LRR_typ_2 128 151 IPR003591 -
Cco08g0863 1096 Pfam Protein kinase domain 789 1056 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g0863 1096 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 513 707 - -
Cco08g0863 1096 Gene3D Phosphorylase Kinase; domain 1 750 864 - -
Cco08g0863 1096 Pfam Leucine rich repeat N-terminal domain 34 77 IPR013210 -
Cco08g0863 1096 FunFam Putative LRR receptor-like serine/threonine-protein kinase 772 864 - -
Cco08g0863 1096 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 865 1077 - -
Cco08g0863 1096 SMART serkin_6 787 1063 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g0863 1096 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 212 435 - -
Cco08g0863 1096 ProSitePatterns Protein kinases ATP-binding region signature. 793 816 IPR017441 GO:0005524(InterPro)
Cco08g0863 1096 Gene3D Ribonuclease Inhibitor 36 193 IPR032675 -
Cco08g0863 1096 Gene3D Ribonuclease Inhibitor 194 288 IPR032675 -
Cco08g0863 1096 SUPERFAMILY Protein kinase-like (PK-like) 770 1060 IPR011009 -
Cco08g0863 1096 SUPERFAMILY L domain-like 61 407 - -
Cco08g0863 1096 ProSitePatterns Serine/Threonine protein kinases active-site signature. 907 919 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g0863 1096 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 33 196 - -
Cco08g0863 1096 ProSiteProfiles Leucine-rich repeat profile. 636 658 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0792 Cco-Chr6:9186963 Cco08g0863 Cco-Chr8:20473261 2.70E-79 dispersed
Cco07g1757 Cco-Chr7:31718764 Cco08g0863 Cco-Chr8:20473261 5.70E-87 dispersed
Cco08g0863 Cco-Chr8:20473261 Cco09g0985 Cco-Chr9:9315606 1.20E-103 dispersed
Cco08g0863 Cco-Chr8:20473261 Cco06g0823 Cco-Chr6:9893654 7.90E-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87028 PF00069 Pkinase 1.60E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0863 - - - 0.0