Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0867 ATGAGGCACAATTCCAAGAATCAACCTCAGCTTTTTTGGCCGAGAGTGGTCTTGCGCAAATGGCTCAATATCAGCGCTAAAGAGTCGGATTATAGTGCCGATACCGAAGATGATGAAGATGTGAACTCTTCCGATTCCGAGTCTGAAGAATGTGGTGTTAGGGGAAGAGAATCACGCTTTAAGGTAGACAACAAAGATGAACCACTGGTTGATGCTTATGATGTGCTGCCGAGGTTGAGAAGAAGAAATTCAGAAACATTTAGGACGCAATATATCAACACAAAAGAACTCAGAATATGTGTTGGGACTTGGAATGTTGGAGGAAAACTACCTCCTGAAGATCTAGATATTGATGGCTGGATAGATACCAACGAGCCGGCTGATATCTATGTCCTTGGTCTCCAGGAGATTGTCCCATTGAATGCTGGAAATATATTTGGTGCTGAAGACAGTCGCCCAGTTGCAAGGTGGGAAGATATTATCCGCGAAACATTGAATAGGGTTAGACCTGCTACAACCAAGATTAAGTGCTTTAGTGATCCACCATCCCCATCAAAGTTTAAGCCATCTGATGACATCCCAGATTTAGAGGAGGAGATTCTGCAGGAAAGTGATAGTGACATTGGTGAGGAAGTGCATCCATGTGATGAAGAATTCTTTGGCAAGGAAAATGTCGATGGACTGGTAGGTGATTCAAATCTAAGCTTGAAGTTCCCAGTTTCAGAACTTTCTGCAAATACCAAATCAGGGATACCTGTAGAACAGGATTTAGTGAGGCAATATTCTTCTCCAAAAAGATTGGATCGGTTAAATTGCTTACGGACTGAAGACAGCGCAGAGAATGACGAGGTTCTCTTGCTACAAAACAGAAGATTAACTAAAATGCTTAGTGGGTCAGAAAGGATTGGTCTGTGTTGGCCTGAGCCTCCACTACACTTACTACCCCACAATGTTTTAGAGAGACCTAACTCATTTAAATCAATAAGATCGTTTAAAACAACCAAGTCCTTTATAGCATTTAATTCTTTCAAGTCAACCATGAATGAAATTCCATCAGGGGTTGCTCTGCTTGGAGAAATTGATCTCGAGTCTCTCCTAAAACGAAAGAGAAGATCCTCATATGTTAGAATAGTAAGTAAACAAATGGTTGGAATTTTCCTCACAATATGGGTTCGTAGGAGTTTGCGAAGGCACATTCAGAATGTAAATGTCTCTACTGTTGGTGTTGGTGTAATGGGCTACATTGGCAACAAGGGATCCATATCTGTCAGCATGTCCATATATCAGACCCTATTTTGCTTTATATGCACTCACCTGACTTCAGGTGAAAAGGAGGGAGATGAACTTAAAAGAAATGCTGACGTGAGTGAAATACATCGAAGAACTCAATTCCATCCACTTAATGGTATTGGGTTTCCAAAAATAATCCACGACCACGAGCGGATAATCTGGTTGGGTGATTTAAATTACCGCATCAATTTGTCTTATGAGAAGACAAGAGAGCTTATCTCGAGAAAAGAGTGGTCCAAATTGGCTGAGAGTGATCAGTTATTGCGGGAGCTTAAGAAGGGTCGTGCATTTGATGGATGGACTGAGGGAAACCTAAGTTTTGCTCCAACCTATAAGTACGAGAACAATTCAGAGAAGTATTACGGCGAAGATCCAAAAGTTGGAAGGCGTACTCCAGCATGGTGTGACCGTATACTTTCATACGGCAAGGGATTGAAATTGTGCAGTTATAGGAGGACTGAAATTAAATTTTCTGATCATAGACCAGTGACAGCCACCTATGTGGCCGAGGTCGAGGTTTTCTGTCCCCGTAAGCTACAGCGAGCTCTAACGTTTACAGATGCAGAGATCGAAAATGAGGAAGTAGCAATGGATGTATACTGA 1893 41.84 MRHNSKNQPQLFWPRVVLRKWLNISAKESDYSADTEDDEDVNSSDSESEECGVRGRESRFKVDNKDEPLVDAYDVLPRLRRRNSETFRTQYINTKELRICVGTWNVGGKLPPEDLDIDGWIDTNEPADIYVLGLQEIVPLNAGNIFGAEDSRPVARWEDIIRETLNRVRPATTKIKCFSDPPSPSKFKPSDDIPDLEEEILQESDSDIGEEVHPCDEEFFGKENVDGLVGDSNLSLKFPVSELSANTKSGIPVEQDLVRQYSSPKRLDRLNCLRTEDSAENDEVLLLQNRRLTKMLSGSERIGLCWPEPPLHLLPHNVLERPNSFKSIRSFKTTKSFIAFNSFKSTMNEIPSGVALLGEIDLESLLKRKRRSSYVRIVSKQMVGIFLTIWVRRSLRRHIQNVNVSTVGVGVMGYIGNKGSISVSMSIYQTLFCFICTHLTSGEKEGDELKRNADVSEIHRRTQFHPLNGIGFPKIIHDHERIIWLGDLNYRINLSYEKTRELISRKEWSKLAESDQLLRELKKGRAFDGWTEGNLSFAPTYKYENNSEKYYGEDPKVGRRTPAWCDRILSYGKGLKLCSYRRTEIKFSDHRPVTATYVAEVEVFCPRKLQRALTFTDAEIENEEVAMDVY 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20528643 20535232 + CcPI632755_08g008670.1 Cco08g0867 185341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0867 630 Gene3D Endonuclease/exonuclease/phosphatase 332 629 IPR036691 -
Cco08g0867 630 SUPERFAMILY DNase I-like 76 615 IPR036691 -
Cco08g0867 630 Pfam Endonuclease/Exonuclease/phosphatase family 2 102 167 IPR000300 GO:0016791(InterPro)|GO:0046856(InterPro)
Cco08g0867 630 Pfam Endonuclease/Exonuclease/phosphatase family 2 361 595 IPR000300 GO:0016791(InterPro)|GO:0046856(InterPro)
Cco08g0867 630 FunFam Type I inositol polyphosphate 5-phosphatase 1 78 181 - -
Cco08g0867 630 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 16 624 IPR045849 GO:0004439(PANTHER)|GO:0004445(InterPro)|GO:0034485(PANTHER)|GO:0046856(PANTHER)
Cco08g0867 630 Gene3D Endonuclease/exonuclease/phosphatase 75 180 IPR036691 -
Cco08g0867 630 MobiDBLite consensus disorder prediction 29 58 - -
Cco08g0867 630 SMART i5p_5 307 605 IPR000300 GO:0016791(InterPro)|GO:0046856(InterPro)
Cco08g0867 630 MobiDBLite consensus disorder prediction 32 46 - -
Cco08g0867 630 FunFam type IV inositol polyphosphate 5-phosphatase 3 326 628 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0867 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0867 Cco-Chr8:20528643 Cco10g0196 Cco-Chr10:1958225 3.20E-133 dispersed
Cco08g0867 Cco-Chr8:20528643 Cco09g0695 Cco-Chr9:6208675 1.10E-106 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1334 . . . . . . . . Cmo04g02580 Cmo15g00580 . . . . . . Cpe13g00701 Bhi04g01737 . . . . . . Cla08g00742 Cam08g1169 Cec08g0759 Cco08g0867 Clacu08g0876 . Cre08g0677 . . Cone17ag0768 Cone20ag0358 . . . . . . . Bda13g01416 . . Bma01g01429 . . . . . . Car04g02373 Car15g00534 Cpe01g02134 . . . . . . . . . . . . . . . Lsi08g00578 . Chy03g00484 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003115 1 10 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 52