Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0870 ATGAAGTTTCTCTTATCGTTCTTACTTCTCTCTGTTACTTCTCCACGTTTTTTCCACATTGCACTGGCTCGAGGTGCCTCCAACCGCTTCATTTCGTCAGTGGATTTCGATAGTCGTGCACATGGCGGTTCTGCTAGAGTTTTACTCGAGGACGATAAATCTCAAGGAAGCATCATGCAAGGTTATATGACCAATAAAGAGCTTGAGGAGGCGATTAAAGCTTTCGGTAAAAAATGTAGTAAAATTTCTAGGATATACAGTATTGGAGACAGCGTGCAAGGGTTTCCACTGTGGGTAATGGAAATCTCTGACAAGCCAGGCCAGGAAGAAGCTGAACCTGCATTTAAGTACATAGGAAATGTACATGGAGATGAACCTGTTGGCAGGGAGCTTCTTTTACAATTTGCTAACTGGATATGTGATAATTACCATAAGGATCCGTTGGCTACATTGATTGTGGAGAATGTTCATCTTCATATACTTCCATCCATGAATCCTGATGGGTTTTCTCTTAAGAGACGCAATAATGCGAACAATGTTGATCTAAACAGAGATTTCCCTGACCAGTTCTTTGTCATCAACGACGATGAATATGCGCGACAACCTGAAACAAAAGCAATAATGAAGTGGATGAGAGATGTACATTTCACTGCCTCTGCCAGTTTGCATGGGGGTGCACTTGTTGCAAATTACCCATGGGATGGCACAGCGGATAAAAGGAAAGATTATTATGCATGTCCAGATGATGAAACATTCCGATTCATGGCTAGTGTCTATAGTCGCTCACATCATAACATGTCTTTTAGCCAAGAATTTCAAGGAGGAATTACAAATGGAGCTCAATGGTACCCCATATATGGTGGCATGCAAGACTGGAACTACATACACGGTGGCTGTTTTGAGTTGACTTTAGAGATTACAGACAACAAATGGCCTCCTGCTAATGAGCTCGCCATCATTTTTGAGTATAACAAGTTGAGCATGCTAAAGCTTGTTGCAAGCCTTGTTCAGACAGGAATACATGGAAGAATTTTTTCATCAGATAGTGGAAGGCCGTTACCTGCAACCATTACACTCAATGGAATAGATTACTCGGTTAAAGCTAGTCAAAAGTTTGCCGACTACCACCGGTTAGCCGCCCCAAGACAAAAGTATGAAGTAACCGCATCGATGCCCGGGTACAAGTCAAAGAATACAAGCATCTGGTTGGAAGAGGGAGCGATGTCTGTGGACTTTGTTCTTGATCCAGACACAACCACCAAAGGAAAACTAATACAAAACTGTGATTGCTACCGTGGCAATAGGCACGACTTTGTGGGCTATATTTGGGAACACTACTTTGAGGCCTATATTTTCTTGGCGATCCAAACCTGGCCGGTCCCGTATTCTACAAGTAACAAGCAAGCAGAAGCACTAGATTTGAATGAATCAATTCCACCTTTAGAATGGAATTATGGCTAA 1461 42.3 MKFLLSFLLLSVTSPRFFHIALARGASNRFISSVDFDSRAHGGSARVLLEDDKSQGSIMQGYMTNKELEEAIKAFGKKCSKISRIYSIGDSVQGFPLWVMEISDKPGQEEAEPAFKYIGNVHGDEPVGRELLLQFANWICDNYHKDPLATLIVENVHLHILPSMNPDGFSLKRRNNANNVDLNRDFPDQFFVINDDEYARQPETKAIMKWMRDVHFTASASLHGGALVANYPWDGTADKRKDYYACPDDETFRFMASVYSRSHHNMSFSQEFQGGITNGAQWYPIYGGMQDWNYIHGGCFELTLEITDNKWPPANELAIIFEYNKLSMLKLVASLVQTGIHGRIFSSDSGRPLPATITLNGIDYSVKASQKFADYHRLAAPRQKYEVTASMPGYKSKNTSIWLEEGAMSVDFVLDPDTTTKGKLIQNCDCYRGNRHDFVGYIWEHYFEAYIFLAIQTWPVPYSTSNKQAEALDLNESIPPLEWNYG 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20545368 20555036 + CcPI632755_08g008700.1 Cco08g0870 185344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0870 486 CDD Peptidase_M14NE-CP-C_like 339 414 - -
Cco08g0870 486 ProSitePatterns Zinc carboxypeptidases, zinc-binding region 2 signature. 223 233 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cco08g0870 486 Pfam Zinc carboxypeptidase 69 321 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cco08g0870 486 SMART zn_carb 62 444 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cco08g0870 486 FunFam Carboxypeptidase D 57 337 - -
Cco08g0870 486 PANTHER PROTEASE M14 CARBOXYPEPTIDASE 53 407 IPR050753 GO:0004181(PANTHER)|GO:0005615(PANTHER)|GO:0006518(PANTHER)|GO:0016485(PANTHER)
Cco08g0870 486 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 179 187 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cco08g0870 486 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 220 233 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cco08g0870 486 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 113 127 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cco08g0870 486 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 88 100 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cco08g0870 486 CDD M14_CP_plant 62 334 - -
Cco08g0870 486 Gene3D - 338 417 - -
Cco08g0870 486 Gene3D Zn peptidases 60 335 - -
Cco08g0870 486 SUPERFAMILY Carboxypeptidase regulatory domain-like 339 425 IPR008969 -
Cco08g0870 486 SUPERFAMILY Zn-dependent exopeptidases 58 333 - -
Cco08g0870 486 ProSitePatterns Zinc carboxypeptidases, zinc-binding region 1 signature. 113 135 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0870 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1320 . . . . . . . . Cmo04g02579 . . . . . Sed11g1378 . . Bhi04g01745 Tan11g1099 . . Hepe02g2814 . Lcy10g1371 Cla08g00746 Cam08g1173 Cec08g0763 Cco08g0870 Clacu08g0879 . Cre08g0681 . . . Cone20ag0364 . . . Cme03g01053 Blo17g00133 . . Bda13g01417 . . . Bma02g00153 . . . . . Car04g02372 . Cpe01g02133 . . . . . . . . . . . . . . . Lsi08g00575 . Chy03g00488 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010573 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 32