Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0875 ATGGTGGGCATCAAAATCTTCCCACGAGCCCTTCATTGCCCAACTGACCTTCTGCCCGCTCTCCATTTCAATTCAATCTCCCTTAACTACCTTCTTCTTTCTGTCACTCTCCTTCTCCTCCTCTTTCTTCATGCTTCCATCCATTATTTGACGTGTATTTCGTTGCTTCTGCTTCAGTCGTATGCAGCCGCGTGGATGTTTAACGTTGTAACTTCTGTTGGAATTATAATCGTGAATAAGGCTCTCATGGCTACCTATGGCTTCAGCTTCGCCACAACTTTAACAGGTTTGCATTTTGCGACAACCACCCTGATGACTGTCATTCTAAGGTGGCTTGGTTATATACAAGCCTCCCATCTCCCTCTACCAGAGCTTCTAAAATTTGTACTATTTGCCAACTTTTCTATTGTTGGAATGAATGTTAGCCTGATGTGGAATTCAGTGGGATTTTATCAGATTGCAAAACTAAGTATGATTCCCGTCTCATGCTTGTTGGAAGTGGTCTTGGACAAGATTCGATACTCCAGAGATACGAAGTTGAGCATTGCAGTTGTTCTCTTGGGTGTTGGAGTATGTACTGTAACTGATGTCAGTGTTAATACCAGAGGCTTTGTCGCTGCCGTTATCGCCGTATGGAGCACTTCTCTGCAGCAATACTATGTGCATTTCCTCCAGCGGAAGTATTCGCTGAGTTCCTTCAACCTGTTAGGACACACAGCTCCAGCGCAGGCCGGCTCTCTTCTACTGGTCGGACCCTTTCTCGACTACTGGTTGACAAGCAAAAGGGTAGACCGATATGACTACAATTTAGCCTCTACCATTTTCATAATTCTCTCTTGCTCCATTGCTGTGGGAACCAATCTTAGCCAATTTATCTGCATAGGCAGATTCACAGCTGTGTCATTTCAAGTTCTTGGCCACATGAAGACAATCCTTGTGTTAATCATGGGATTCTTCTTCTTTGGGAAGGAAGGGCTTAACATGCAGGTAGTTTTGGGAATGATCATAGCTGTCATCGGGATGATATGGTACGGTAATGCCTCATCGAAACCCGGTGGAAAAGAACGTCGGAGCCACACGCTCCCGACAGCTAGACAACAAAAACATGGTGGTTTAACAGATTCTACTGAACATGATGGGAAAGTCTAA 1149 44.65 MVGIKIFPRALHCPTDLLPALHFNSISLNYLLLSVTLLLLLFLHASIHYLTCISLLLLQSYAAAWMFNVVTSVGIIIVNKALMATYGFSFATTLTGLHFATTTLMTVILRWLGYIQASHLPLPELLKFVLFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCLLEVVLDKIRYSRDTKLSIAVVLLGVGVCTVTDVSVNTRGFVAAVIAVWSTSLQQYYVHFLQRKYSLSSFNLLGHTAPAQAGSLLLVGPFLDYWLTSKRVDRYDYNLASTIFIILSCSIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFFFFGKEGLNMQVVLGMIIAVIGMIWYGNASSKPGGKERRSHTLPTARQQKHGGLTDSTEHDGKV 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20611279 20615308 - CcPI632755_08g008750.1 Cco08g0875 185349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0875 382 PANTHER SOLUTE CARRIER FAMILY 35 62 347 IPR050186 GO:0005338(PANTHER)|GO:0005459(PANTHER)|GO:0005794(PANTHER)|GO:0015297(PANTHER)
Cco08g0875 382 MobiDBLite consensus disorder prediction 349 382 - -
Cco08g0875 382 Pfam Triose-phosphate Transporter family 70 344 IPR004853 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0875 K26224 - - csv:101221215 621.313
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1346 Cco-Chr4:28793364 Cco08g0875 Cco-Chr8:20611279 5.00E-140 dispersed
Cco08g0875 Cco-Chr8:20611279 Cco11g1977 Cco-Chr11:32221512 6.40E-76 dispersed
Cco08g0875 Cco-Chr8:20611279 Cco02g1151 Cco-Chr2:19776583 4.30E-80 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1271 Blo01g01757 Blo12g00764 . Bda03g00418 Bpe02g00185 Bpe04g00383 Bma04g00394 Bma01g02540 . . . Cma09g01148 Car01g00839 . . Cpe06g00928 . . . . . . . . Cla08g00750 Cam08g1177 Cec08g0767 Cco08g0875 Clacu08g0883 . Cre08g0685 . . . . . . . . . . . . . . . . Sed07g2813 . Cmo09g01241 . . . . . Cpe02g00923 Bhi09g01580 Tan01g3004 Cmetu01g2180 . . . . Cla09g00971 Cam09g1023 Cec09g1026 Cco09g1037 . . Cre09g0988 . . . Cme01g00726
Vvi18g1339 Blo01g01742 Blo12g00774 . Bda03g00404 Bpe02g00201 Bpe04g00368 Bma04g00384 Bma01g02520 Cmo04g02574 Cmo15g00586 . . . . . . Cpe13g00696 Bhi04g01752 . . . Hepe02g2810 . Lcy10g1367 Cla08g00750 Cam08g1177 Cec08g0767 Cco08g0875 Clacu08g0883 . Cre08g0685 Cone4ag1470 Cone7ag1470 . . . . . Cme03g01049 . . Bda11g00862 Bda01g01473 . . Bma01g00781 . . . . . . Car04g02367 Car15g00539 Cpe01g02129 . . . . . . . . . . . . . . . Lsi08g00571 . Chy03g00491 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001292 1 4 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 8 2 2 76