Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g0888 | ATGGCGAATAATGCGGCGGAGCGCGGGTCGTTCTCGGGGAAGGACTACCACGATCCGCCACCGGTGCCGCTCATCGACGGCGAGGAGATAAGGAAGTGGTCGTTCTACAGAGCTTTGATTGCGGAGTTCATAGCGACTTCGCTTTTTCTGTATGTGACTGTGTTGACGGTGATCGGGTACAAATCGGAAACGGATGGAATCGGGAAGAAGAATGTGGATTCTTGTGGAGGAGTTGGGATTCTGGGAATTGCTTGGGCATTTGGAGGAATGATCTTCGTTCTTGTTTACTGTACTGCTGGAATTTCAGGGGGCCACATAAACCCAGCGGTGACATTTGGGCTGCTGTTGGGCCGAAAGGTGTCACTTGTGCGGGCCGTGATGTACATGGTGGCCCAATGTTTGGGGGCCATCAGCGGAGTTGGGCTTGTTAAGGCCTTCCAGAAGGCCCACTTCCAGAAGTACGGCGGCGGAGCGAATGGGCTTGCCAATGACTATACCATCGGCGTCGGACTGGCCGCCGAGATCGTCGGCACTTTCGTGTTGGTGTATACCGTCTTCTCCGCCACCGATCCTAAACGAAATGCCAGAGATTCCCATGTTCCGGTTTTGGCTCCACTTCCAATTGGGTTTGCAGTTTTCATGGTTCATTTGGCTACCATTCCAATCACTGGCACTGGAATCAACCCAGCAAGAAGCTTGGGATCTGCTGTTATCTTCAATGAACAAAAGGCTTGGAATAACCATTGGATATTTTGGGTTGGACCCTTCATAGGAGCAGCCATTGCAGCATTCTACCACCAATTCATCTTGAGAGCAGGTGCTGTTAAAGCTCTTGGTTCATTTAGAAGCAACCCACATGTGTGA | 864 | 51.39 | MANNAAERGSFSGKDYHDPPPVPLIDGEEIRKWSFYRALIAEFIATSLFLYVTVLTVIGYKSETDGIGKKNVDSCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLGRKVSLVRAVMYMVAQCLGAISGVGLVKAFQKAHFQKYGGGANGLANDYTIGVGLAAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGSAVIFNEQKAWNNHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPHV | 287 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 20756617 | 20759980 | - | CcPI632755_08g008880.1 | Cco08g0888 | 185362 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g0888 | 287 | NCBIfam | MIP family channel protein | 41 | 266 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco08g0888 | 287 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cco08g0888 | 287 | ProSitePatterns | MIP family signature. | 105 | 113 | IPR022357 | - | |
Cco08g0888 | 287 | PRINTS | Major intrinsic protein family signature | 87 | 111 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco08g0888 | 287 | PRINTS | Major intrinsic protein family signature | 209 | 231 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco08g0888 | 287 | PRINTS | Major intrinsic protein family signature | 124 | 143 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco08g0888 | 287 | PRINTS | Major intrinsic protein family signature | 173 | 191 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco08g0888 | 287 | PRINTS | Major intrinsic protein family signature | 37 | 56 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco08g0888 | 287 | PRINTS | Major intrinsic protein family signature | 249 | 269 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco08g0888 | 287 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 8 | 283 | IPR034294 | GO:0005886(PANTHER)|GO:0015250(PANTHER) | |
Cco08g0888 | 287 | FunFam | Probable aquaporin PIP1-2 | 22 | 285 | - | - | |
Cco08g0888 | 287 | Pfam | Major intrinsic protein | 29 | 266 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco08g0888 | 287 | Gene3D | Glycerol uptake facilitator protein. | 22 | 287 | IPR023271 | - | |
Cco08g0888 | 287 | CDD | MIP | 37 | 269 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco08g0888 | 287 | SUPERFAMILY | Aquaporin-like | 29 | 271 | IPR023271 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1243 | Cco-Chr2:23664736 | Cco08g0888 | Cco-Chr8:20756617 | 1.60E-16 | dispersed | |
Cco07g0414 | Cco-Chr7:4543352 | Cco08g0888 | Cco-Chr8:20756617 | 7.70E-106 | dispersed | |
Cco08g0888 | Cco-Chr8:20756617 | Cco10g2174 | Cco-Chr10:34890411 | 4.00E-99 | dispersed | |
Cco10g2017 | Cco-Chr10:33662070 | Cco08g0888 | Cco-Chr8:20756617 | 5.60E-117 | wgd | |
Cco04g1095 | Cco-Chr4:26391714 | Cco08g0888 | Cco-Chr8:20756617 | 3.00E-79 | wgd | |
Cco05g2361 | Cco-Chr5:32129236 | Cco08g0888 | Cco-Chr8:20756617 | 6.80E-131 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g0888 | K09872 | - | csv:101205700 | 517.309 |