Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0888 ATGGCGAATAATGCGGCGGAGCGCGGGTCGTTCTCGGGGAAGGACTACCACGATCCGCCACCGGTGCCGCTCATCGACGGCGAGGAGATAAGGAAGTGGTCGTTCTACAGAGCTTTGATTGCGGAGTTCATAGCGACTTCGCTTTTTCTGTATGTGACTGTGTTGACGGTGATCGGGTACAAATCGGAAACGGATGGAATCGGGAAGAAGAATGTGGATTCTTGTGGAGGAGTTGGGATTCTGGGAATTGCTTGGGCATTTGGAGGAATGATCTTCGTTCTTGTTTACTGTACTGCTGGAATTTCAGGGGGCCACATAAACCCAGCGGTGACATTTGGGCTGCTGTTGGGCCGAAAGGTGTCACTTGTGCGGGCCGTGATGTACATGGTGGCCCAATGTTTGGGGGCCATCAGCGGAGTTGGGCTTGTTAAGGCCTTCCAGAAGGCCCACTTCCAGAAGTACGGCGGCGGAGCGAATGGGCTTGCCAATGACTATACCATCGGCGTCGGACTGGCCGCCGAGATCGTCGGCACTTTCGTGTTGGTGTATACCGTCTTCTCCGCCACCGATCCTAAACGAAATGCCAGAGATTCCCATGTTCCGGTTTTGGCTCCACTTCCAATTGGGTTTGCAGTTTTCATGGTTCATTTGGCTACCATTCCAATCACTGGCACTGGAATCAACCCAGCAAGAAGCTTGGGATCTGCTGTTATCTTCAATGAACAAAAGGCTTGGAATAACCATTGGATATTTTGGGTTGGACCCTTCATAGGAGCAGCCATTGCAGCATTCTACCACCAATTCATCTTGAGAGCAGGTGCTGTTAAAGCTCTTGGTTCATTTAGAAGCAACCCACATGTGTGA 864 51.39 MANNAAERGSFSGKDYHDPPPVPLIDGEEIRKWSFYRALIAEFIATSLFLYVTVLTVIGYKSETDGIGKKNVDSCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLGRKVSLVRAVMYMVAQCLGAISGVGLVKAFQKAHFQKYGGGANGLANDYTIGVGLAAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGSAVIFNEQKAWNNHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPHV 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20756617 20759980 - CcPI632755_08g008880.1 Cco08g0888 185362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0888 287 NCBIfam MIP family channel protein 41 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco08g0888 287 MobiDBLite consensus disorder prediction 1 20 - -
Cco08g0888 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Cco08g0888 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco08g0888 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco08g0888 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco08g0888 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco08g0888 287 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco08g0888 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco08g0888 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 283 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cco08g0888 287 FunFam Probable aquaporin PIP1-2 22 285 - -
Cco08g0888 287 Pfam Major intrinsic protein 29 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco08g0888 287 Gene3D Glycerol uptake facilitator protein. 22 287 IPR023271 -
Cco08g0888 287 CDD MIP 37 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco08g0888 287 SUPERFAMILY Aquaporin-like 29 271 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1243 Cco-Chr2:23664736 Cco08g0888 Cco-Chr8:20756617 1.60E-16 dispersed
Cco07g0414 Cco-Chr7:4543352 Cco08g0888 Cco-Chr8:20756617 7.70E-106 dispersed
Cco08g0888 Cco-Chr8:20756617 Cco10g2174 Cco-Chr10:34890411 4.00E-99 dispersed
Cco10g2017 Cco-Chr10:33662070 Cco08g0888 Cco-Chr8:20756617 5.60E-117 wgd
Cco04g1095 Cco-Chr4:26391714 Cco08g0888 Cco-Chr8:20756617 3.00E-79 wgd
Cco05g2361 Cco-Chr5:32129236 Cco08g0888 Cco-Chr8:20756617 6.80E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0888 K09872 - csv:101205700 517.309