Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0894 ATGAATAGAGGAATGGATTCAGTGATTGATCCAATGATGAACCATGACGAGCATTTAGATTCTCAGCTATGGCATGCCTGTGCCGGTGGGCTGATTCAATTGCCTGCCATTAACTCAAAGGTAGTCTACTTCCCCCAGGGCCACGCGGAGCATGCTCAGGGGTATGTCGATTTCGGGAATGCTCGAATTCCTTCACTCATTCCTTGCAGGGTATCTGGCATAAGACATATGGCAGATCCTGAAACTGATGAGGTTTTTGCTAAGATAAAGTTGACTCCAACGAGGAACAATGAATTCAGTTTGGATAATGATGATAAGCTTCTAGGCCACAATGAAATTAGGAGTCAGGAGAAACCTACCTCCTTTGCTAAGACATTGACACAATCTGATGCGAACAATGGTGGAGGATTCTCCGTGCCTCGTTATTGCGCTGAGACCATCTTTCCTCGGTTGGACTACTCGGTAGAGCCTCCTGTTCAGACCATTCTTGCCAAGGATGTTCATGGTGAGATTTGGAAGTTTAGGCATATATATAGAGGAACTCCACGTCGGCATCTTTTGACGACTGGGTGGAGTAATTTCGTGAATCAGAAGAAACTTGTAGCTGGGGACTCAATTATTTTCTTGAGGGCAGAAAATGGAGATCTTTGTATTGGTGTTAGACGAGCCAAGAGGGGAATTGGTCGTGGAGTTGATTACTCACCTAGCTGGAACTCAACTAATTCAGGCACTCCACCTGTGGGGTTTTCTGATTTTATGAGGGAGAATGAAGGTAGATTGGTGGGAAGAGACTCAAATGGGAATCTGAGTGGGAGACTGAAGGTAGAATCCGTTATTGAAGCTGCAATGCTTGCTGCTAGTGGCAAGCCCTTCGAGGTTGTGTACTACCCATGTGCTGGTGCTCCAGAGTTTGTTGTTAAGGCCTCTTGTTTAAGATCTGCAATGCAAATTCACTGGTATTCTGCTATGAGATTCAAGATGGCTTTTGAAACCGAGGATGCGTCTCGGATAAGCTGGTTTATGGGAACTATATCAGCTATCCAGGTAGCTGATCCTATGCGGTGGCCTGATTCTCCATGGCGAATGCTGCAGGTGACATGGGATGAGCCGGAGTTACTGCGAAATGTGCAGAGTGTCAACCCATGGTTGGTTGAAGTGGTAGTAAATATGCCAGCTATCAATGTCTCCCCCTTCTCGCCACCAAGAAAGAAGCCACGTCTTCCAATTCCAGCAGAAACTTCTGTATTTGATCACCTTCCAATGCCATCGTTTTCCACCAATATCGTTGATACAACCAACCCCTTACTAAGTATTACAGCTAACAAAATTCCTGCAGGCATACAGGGAGCCAGGCATACTCAATTTGGACTCTCTTCACCCAACCTCCAAATCAGCAAACTGCTTCCGAGACAATTTTCCCCTGGTTTTAAGCACCTTGATGACGCCACTCTTCTTCCTGGCATCCGAGGCGATGATATTTTTGGAGACATGAAAAACCCTGATAATTGTTCTGACTGGCTAACAATGGGAAATCATATCCAAAGCTCAAAAGAAAGCTCGAAGGAAAGCTCGAAAGAAAGCAAAGAAACAAAACCAACTCATATCATATTGTTTGGCCAACTCATTTTTCCTAACCAACAGACTTCTAACAGCTGCTCAGGAGATACGACGAATGCATCAGATGCAAATCAAGAGAAAGCATCAAATCTTTCTGACGGTTCTGGTTTGTCATCACAACAAAATGGTTCACTGGAGAATTCATCAGAGGGAGGATCTACCTCGTACAACGGTCAGGACAAAACTGGTCTTGGCTTGGACACCGGTCATTGCAAAGTGTTTACAGAGTTGGAGAATGTTGGTCGTACTCTTGATCTATCGGCCCTCAGGTCGTACGAAGAATTGTATAGAAAATTGGGCAATATGCTTAGTTTAAGAAGCTCAGAGATGCTGAACTCTGTTCTTTATCAGGATGCTCTTGGCTCTACAAAGCATGTTGGAGAAGAGCCTTTCAGCGAGTTTCTGAAGAAAGCGCGAAAACTAACCATACTCACAGATTCTCGAAGTAGGGACAACATTAGACTACATTAG 2088 44.68 MNRGMDSVIDPMMNHDEHLDSQLWHACAGGLIQLPAINSKVVYFPQGHAEHAQGYVDFGNARIPSLIPCRVSGIRHMADPETDEVFAKIKLTPTRNNEFSLDNDDKLLGHNEIRSQEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSVEPPVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIIFLRAENGDLCIGVRRAKRGIGRGVDYSPSWNSTNSGTPPVGFSDFMRENEGRLVGRDSNGNLSGRLKVESVIEAAMLAASGKPFEVVYYPCAGAPEFVVKASCLRSAMQIHWYSAMRFKMAFETEDASRISWFMGTISAIQVADPMRWPDSPWRMLQVTWDEPELLRNVQSVNPWLVEVVVNMPAINVSPFSPPRKKPRLPIPAETSVFDHLPMPSFSTNIVDTTNPLLSITANKIPAGIQGARHTQFGLSSPNLQISKLLPRQFSPGFKHLDDATLLPGIRGDDIFGDMKNPDNCSDWLTMGNHIQSSKESSKESSKESKETKPTHIILFGQLIFPNQQTSNSCSGDTTNASDANQEKASNLSDGSGLSSQQNGSLENSSEGGSTSYNGQDKTGLGLDTGHCKVFTELENVGRTLDLSALRSYEELYRKLGNMLSLRSSEMLNSVLYQDALGSTKHVGEEPFSEFLKKARKLTILTDSRSRDNIRLH 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20796660 20799177 - CcPI632755_08g008940.1 Cco08g0894 185368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0894 695 ProSiteProfiles PB1 domain profile. 607 687 IPR053793 -
Cco08g0894 695 MobiDBLite consensus disorder prediction 548 600 - -
Cco08g0894 695 FunFam Auxin response factor 120 224 - -
Cco08g0894 695 CDD B3_DNA 121 222 IPR003340 GO:0003677(InterPro)
Cco08g0894 695 Gene3D - 606 690 - -
Cco08g0894 695 Pfam Auxin response factor 281 364 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cco08g0894 695 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 687 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cco08g0894 695 MobiDBLite consensus disorder prediction 505 530 - -
Cco08g0894 695 Gene3D - 120 224 IPR015300 -
Cco08g0894 695 FunFam Auxin response factor 319 392 - -
Cco08g0894 695 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677(InterPro)
Cco08g0894 695 SMART B3_2 122 224 IPR003340 GO:0003677(InterPro)
Cco08g0894 695 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677(InterPro)
Cco08g0894 695 Gene3D - 320 391 - -
Cco08g0894 695 SUPERFAMILY DNA-binding pseudobarrel domain 110 225 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2271 Cco-Chr2:35254091 Cco08g0894 Cco-Chr8:20796660 5.00E-202 dispersed
Cco07g0865 Cco-Chr7:20059607 Cco08g0894 Cco-Chr8:20796660 2.30E-09 dispersed
Cco08g0894 Cco-Chr8:20796660 Cco08g1241 Cco-Chr8:24197638 4.10E-89 dispersed
Cco04g1106 Cco-Chr4:26496418 Cco08g0894 Cco-Chr8:20796660 2.00E-213 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59768 PF02362 B3 4.10E-20 CL0405 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0894 K14486 - csv:101204568 1188.71