Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0900 ATGGAATTCCATCCGGAAAATGGCAACCATGGATCGAGGAAGGAGGCCTCTTTGTGTGGCGACGTGGCAGCGTATTGGAGCGGTGCAGCGAAGGGGCTCGAGCGGAGTCATGTGGAGGAGTTTAAGCGTATGGTCATGGAATTTCGTCGCCCTATTGTGCGACTTGGAGGCGAGAGCCTCACGATAGCGCAAGTTGCGGCTATTGCTACTCGTGCCTTTGATGTTGCAGTGGAGCTCTCTGAGGAGGCTCGCCCTGCTGTGGAGGCGAGTAGTAGGTGGGTTGTTAAAAGTATGACTAATGGAACCGATAGTTATGGTGTTACGACTGGCTTTGGTTCTACGTCGCATCGGAGGACTGACCAAGGAGAAGCCCTTCAAAAAGAGCTCATTAGATTCTTAAACGCTGGAATTTTTGGAAATGATCCAAATTCTTGCCATACATTGACACAACAAGCAACCAGAGCTGCCATGGTGGTGAGAATCAACACACTTTTGCAAGGCTATTCTGGCATTAGGTTTGAAATTTTGGAAGCCATAACCAAATTACTCAACCACAACATAACTCCATGTCTCCCTCTTAGAGGCACCATTACAGCTTCCGGTGACCTGGTTCCTCTCTCATATATTGCTGGGCTTTTGACTGGTAGACCTAATTCTAAGGCCATTGGGCCTAACGGTGACTCTCTTAACCCAATTGAGGCATTTCATCTTGCTGGGATTAGTGGTGGTTTCTTCAACTTGCAGCCTAAAGAAGGTCTTGCTCTTGTCAATGGCACTGCAGTTGGGTCAGGCTTGGCTTCCATGGTTCTATTTGAAGCTAACTTTCTTGCTATCCTTTCTGAGATCTTGTCAGCAATTTTTGCTGAAGTTATGCAAGGAAAACCTGAGTTTACAGATCATTTGACTCATAAGTTAAAACACCATCCTGGGCAGATTGAAGCAGCTGCAATTATGGAGCATATATTAGATGGAAGTTCTTATGTCAAAAGTGCTAAAAAATTGCACGAAACTGACTCGCTTCAAAAGCCTAAACAAGATCGATATGCTCTTAGAACTTCACCTCAGTGGCTCGGTCCTCAAATTGAAGTCATTAGATACTCCACCAAAATGATTGAACGTGAGATTAACTCAGTGAACGATAACCCATTGATTGATGTGTCGAGAAACAAGGCTTTGCATGGAGGAAATTTCCAAGGTACTCCCATTGGTGTGTCCATGGATAATACTCGTTTAGCTATTGCTTCTATTGGTAAACTCATGTTTGCACAATTCTCAGAACTTGTTAATGACTTCTACAATAATGGGTTGCCTTCAAATCTCTCTGCTAGTAGAAATCCAAGTTTGGATTATGGGTTTAAAGGTGCTGAGATTGCAATGGCTTCATATTGCTCTGAGCTTCAATACTTGGCAAATCCAGTAACCAGCCATGTCCAAAGTGCCGAACAACATAACCAAGACGTAAACTCATTGGGGTTGATATCATCGAGAAAGACAACGGAAGCTGTTGAGATTTTAAAGCTTATGTCCACTACTTATTTAGTGGCATTGTGTCAAGCTATTGATTTAAGACACATGGAGGAGATTTTGAAGAAAACAGTAAAGAACACCGTTAGCCAAGTGGCAAAAAAGATTCTGGTGTTGCACTTTAATGGCAATCTCCATCCAATTAGGCATAGTGAAAAGGATTTGCTTCAAGTCGTAGACAGAGAACACATTTTTGCCTATATTGATGATCCTTGCAGTGCTTCATATCCATTGATGCAAAAGCTAAGACAAGTGTTGGTGGATCATGCCCTAAAAAATGGTGAAAAAGAAAACAACCCAAGTGCTTCAATCTTCCAAAAGATCACAGCTTTTGAAGATGAATTAAAAGCACTTTTGCCTAAAGAAGTGGAAAATGCAAGAATGGAAGTGGAAAAAGGGAGCCCTACCATTGAAAACCAAATTAAAGAATGCAGATCTTATCCACTGTACAAGTTCGTTAGAGAAACGTTGGGGACTCGATTGTTGACCGGCGAGAAAGATGTTTCGCCAGGAGAAGAATTCGATAAGGTTTTTTCAGCTATTTCTGATGGAAAATTGATAGATCCAATGCTTGAATGTTTGAAGGATTGGAATGGTATTCCGCTTTCTCTTAGTTAG 2142 42.34 MEFHPENGNHGSRKEASLCGDVAAYWSGAAKGLERSHVEEFKRMVMEFRRPIVRLGGESLTIAQVAAIATRAFDVAVELSEEARPAVEASSRWVVKSMTNGTDSYGVTTGFGSTSHRRTDQGEALQKELIRFLNAGIFGNDPNSCHTLTQQATRAAMVVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGDSLNPIEAFHLAGISGGFFNLQPKEGLALVNGTAVGSGLASMVLFEANFLAILSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKSAKKLHETDSLQKPKQDRYALRTSPQWLGPQIEVIRYSTKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTTEAVEILKLMSTTYLVALCQAIDLRHMEEILKKTVKNTVSQVAKKILVLHFNGNLHPIRHSEKDLLQVVDREHIFAYIDDPCSASYPLMQKLRQVLVDHALKNGEKENNPSASIFQKITAFEDELKALLPKEVENARMEVEKGSPTIENQIKECRSYPLYKFVRETLGTRLLTGEKDVSPGEEFDKVFSAISDGKLIDPMLECLKDWNGIPLSLS 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20905066 20909231 + CcPI632755_08g009000.1 Cco08g0900 185374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0900 713 CDD PAL-HAL 58 523 IPR001106 -
Cco08g0900 713 Gene3D - 526 647 IPR023144 -
Cco08g0900 713 SUPERFAMILY L-aspartase-like 25 711 IPR008948 GO:0003824(InterPro)
Cco08g0900 713 PANTHER HISTIDINE AMMONIA-LYASE 22 711 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cco08g0900 713 FunFam Phenylalanine ammonia-lyase 14 259 - -
Cco08g0900 713 FunFam Phenylalanine ammonia-lyase 526 647 - -
Cco08g0900 713 Gene3D - 16 259 IPR024083 -
Cco08g0900 713 Pfam Aromatic amino acid lyase 60 538 IPR001106 -
Cco08g0900 713 FunFam Phenylalanine ammonia-lyase 260 542 - -
Cco08g0900 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841(InterPro)
Cco08g0900 713 Gene3D Fumarase/aspartase (Central domain) 260 707 - -
Cco08g0900 713 NCBIfam phenylalanine ammonia-lyase 25 703 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1268 Cco-Chr7:26689437 Cco08g0900 Cco-Chr8:20905066 0.00E+00 dispersed
Cco07g1269 Cco-Chr7:26695347 Cco08g0900 Cco-Chr8:20905066 0.00E+00 dispersed
Cco04g1110 Cco-Chr4:26545980 Cco08g0900 Cco-Chr8:20905066 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0900 K10775 - csv:101206890 1297.34